Mercurial > hg > orthanc-stone
view Framework/Toolbox/DicomStructureSet.h @ 627:b7fd0471281c am-dev
fix CodeGeneration unit tests
author | Alain Mazy <alain@mazy.be> |
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date | Wed, 08 May 2019 10:51:41 +0200 |
parents | b70e9be013e4 |
children | 5aa728500586 |
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/** * Stone of Orthanc * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2019 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #pragma once #include "CoordinateSystem3D.h" #include "Extent2D.h" #include <Plugins/Samples/Common/FullOrthancDataset.h> #include <list> namespace OrthancStone { class DicomStructureSet : public boost::noncopyable { public: typedef std::pair<double, double> PolygonPoint; private: struct ReferencedSlice { std::string seriesInstanceUid_; CoordinateSystem3D geometry_; double thickness_; ReferencedSlice() { } ReferencedSlice(const std::string& seriesInstanceUid, const CoordinateSystem3D& geometry, double thickness) : seriesInstanceUid_(seriesInstanceUid), geometry_(geometry), thickness_(thickness) { } }; typedef std::map<std::string, ReferencedSlice> ReferencedSlices; typedef std::vector<Vector> Points; class Polygon { private: std::string sopInstanceUid_; bool hasSlice_; CoordinateSystem3D geometry_; double projectionAlongNormal_; double sliceThickness_; // In millimeters Points points_; Extent2D extent_; void CheckPoint(const Vector& v); public: Polygon(const std::string& sopInstanceUid) : sopInstanceUid_(sopInstanceUid), hasSlice_(false) { } void Reserve(size_t n) { points_.reserve(n); } void AddPoint(const Vector& v); bool UpdateReferencedSlice(const ReferencedSlices& slices); bool IsOnSlice(const CoordinateSystem3D& geometry) const; const std::string& GetSopInstanceUid() const { return sopInstanceUid_; } const Points& GetPoints() const { return points_; } double GetSliceThickness() const { return sliceThickness_; } bool Project(double& x1, double& y1, double& x2, double& y2, const CoordinateSystem3D& slice) const; }; typedef std::list<Polygon> Polygons; struct Structure { std::string name_; std::string interpretation_; Polygons polygons_; uint8_t red_; uint8_t green_; uint8_t blue_; }; typedef std::vector<Structure> Structures; Structures structures_; ReferencedSlices referencedSlices_; const Structure& GetStructure(size_t index) const; Structure& GetStructure(size_t index); bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, Structure& structure, const CoordinateSystem3D& slice); public: DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance); size_t GetStructureCount() const { return structures_.size(); } Vector GetStructureCenter(size_t index) const; const std::string& GetStructureName(size_t index) const; const std::string& GetStructureInterpretation(size_t index) const; void GetStructureColor(uint8_t& red, uint8_t& green, uint8_t& blue, size_t index) const; void GetReferencedInstances(std::set<std::string>& instances); void AddReferencedSlice(const std::string& sopInstanceUid, const std::string& seriesInstanceUid, const CoordinateSystem3D& geometry, double thickness); void AddReferencedSlice(const Orthanc::DicomMap& dataset); void CheckReferencedSlices(); Vector GetNormal() const; static DicomStructureSet* SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc, const std::string& instanceId); bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, size_t index, const CoordinateSystem3D& slice) { return ProjectStructure(polygons, GetStructure(index), slice); } }; }