Mercurial > hg > orthanc-stone
view Framework/Radiography/RadiographySceneReader.cpp @ 1283:6489610c8ee1 bugs/2020-02-invisible-slice
2019 to 2020
author | Benjamin Golinvaux <bgo@osimis.io> |
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date | Fri, 07 Feb 2020 13:50:57 +0100 |
parents | 69177b10e2b9 |
children | 7ec8fea061b9 1c7ae79c426d |
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/** * Stone of Orthanc * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2018 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "RadiographySceneReader.h" #include "../Deprecated/Toolbox/DicomFrameConverter.h" #include <Core/Images/FontRegistry.h> #include <Core/Images/PngReader.h> #include <Core/OrthancException.h> #include <Core/Toolbox.h> namespace OrthancStone { void RadiographySceneBuilder::Read(const Json::Value& input, Orthanc::ImageAccessor* dicomImage /* takes ownership */, Deprecated::DicomFrameConverter* dicomFrameConverter /* takes ownership */, RadiographyPhotometricDisplayMode preferredPhotometricDisplayMode ) { dicomImage_.reset(dicomImage); dicomFrameConverter_.reset(dicomFrameConverter); preferredPhotometricDisplayMode_ = preferredPhotometricDisplayMode; Read(input); } RadiographyDicomLayer* RadiographySceneBuilder::LoadDicom(const std::string& instanceId, unsigned int frame, RadiographyLayer::Geometry* geometry) { return dynamic_cast<RadiographyDicomLayer*>(&(scene_.LoadDicomImage(dicomImage_.release(), instanceId, frame, dicomFrameConverter_.release(), preferredPhotometricDisplayMode_, geometry))); } RadiographyDicomLayer* RadiographySceneReader::LoadDicom(const std::string& instanceId, unsigned int frame, RadiographyLayer::Geometry* geometry) { return dynamic_cast<RadiographyDicomLayer*>(&(scene_.LoadDicomFrame(orthancApiClient_, instanceId, frame, false, geometry))); } RadiographyDicomLayer* RadiographySceneGeometryReader::LoadDicom(const std::string& instanceId, unsigned int frame, RadiographyLayer::Geometry* geometry) { std::auto_ptr<RadiographyPlaceholderLayer> layer(new RadiographyPlaceholderLayer(dynamic_cast<IObservable&>(scene_).GetBroker(), scene_)); layer->SetGeometry(*geometry); layer->SetSize(dicomImageWidth_, dicomImageHeight_); scene_.RegisterLayer(layer.get()); return layer.release(); } void RadiographySceneBuilder::Read(const Json::Value& input) { unsigned int version = input["version"].asUInt(); if (version != 1) throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); if (input.isMember("hasWindowing") && input["hasWindowing"].asBool()) { scene_.SetWindowing(input["windowCenter"].asFloat(), input["windowWidth"].asFloat()); } RadiographyDicomLayer* dicomLayer = NULL; for(size_t layerIndex = 0; layerIndex < input["layers"].size(); layerIndex++) { const Json::Value& jsonLayer = input["layers"][(int)layerIndex]; RadiographyLayer::Geometry geometry; if (jsonLayer["type"].asString() == "dicom") { ReadLayerGeometry(geometry, jsonLayer); dicomLayer = LoadDicom(jsonLayer["instanceId"].asString(), jsonLayer["frame"].asUInt(), &geometry); } else if (jsonLayer["type"].asString() == "mask") { if (dicomLayer == NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); // we always assumed the dicom layer was read before the mask } ReadLayerGeometry(geometry, jsonLayer); float foreground = jsonLayer["foreground"].asFloat(); std::vector<Orthanc::ImageProcessing::ImagePoint> corners; for (size_t i = 0; i < jsonLayer["corners"].size(); i++) { Orthanc::ImageProcessing::ImagePoint corner(jsonLayer["corners"][(int)i]["x"].asInt(), jsonLayer["corners"][(int)i]["y"].asInt()); corners.push_back(corner); } scene_.LoadMask(corners, *dicomLayer, foreground, &geometry); } else if (jsonLayer["type"].asString() == "text") { ReadLayerGeometry(geometry, jsonLayer); scene_.LoadText(jsonLayer["text"].asString(), jsonLayer["font"].asString(), jsonLayer["fontSize"].asUInt(), static_cast<uint8_t>(jsonLayer["foreground"].asUInt()), &geometry, false); } else if (jsonLayer["type"].asString() == "alpha") { ReadLayerGeometry(geometry, jsonLayer); const std::string& pngContentBase64 = jsonLayer["content"].asString(); std::string pngContent; std::string mimeType; Orthanc::Toolbox::DecodeDataUriScheme(mimeType, pngContent, pngContentBase64); std::auto_ptr<Orthanc::ImageAccessor> image; if (mimeType == "image/png") { image.reset(new Orthanc::PngReader()); dynamic_cast<Orthanc::PngReader*>(image.get())->ReadFromMemory(pngContent); } else throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); RadiographyAlphaLayer& layer = dynamic_cast<RadiographyAlphaLayer&>(scene_.LoadAlphaBitmap(image.release(), &geometry)); if (!jsonLayer["isUsingWindowing"].asBool()) { layer.SetForegroundValue((float)(jsonLayer["foreground"].asDouble())); } } else throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); } } void RadiographySceneBuilder::ReadDicomLayerGeometry(RadiographyLayer::Geometry& geometry, const Json::Value& input) { for(size_t layerIndex = 0; layerIndex < input["layers"].size(); layerIndex++) { const Json::Value& jsonLayer = input["layers"][(int)layerIndex]; if (jsonLayer["type"].asString() == "dicom") { ReadLayerGeometry(geometry, jsonLayer); return; } } } void RadiographySceneBuilder::ReadLayerGeometry(RadiographyLayer::Geometry& geometry, const Json::Value& jsonLayer) { {// crop unsigned int x, y, width, height; if (jsonLayer["crop"]["hasCrop"].asBool()) { x = jsonLayer["crop"]["x"].asUInt(); y = jsonLayer["crop"]["y"].asUInt(); width = jsonLayer["crop"]["width"].asUInt(); height = jsonLayer["crop"]["height"].asUInt(); geometry.SetCrop(x, y, width, height); } } geometry.SetAngle(jsonLayer["angle"].asDouble()); geometry.SetResizeable(jsonLayer["isResizable"].asBool()); geometry.SetPan(jsonLayer["pan"]["x"].asDouble(), jsonLayer["pan"]["y"].asDouble()); geometry.SetPixelSpacing(jsonLayer["pixelSpacing"]["x"].asDouble(), jsonLayer["pixelSpacing"]["y"].asDouble()); // these fields were introduced later -> they might not exist if (jsonLayer.isMember("flipVertical")) { geometry.SetFlipVertical(jsonLayer["flipVertical"].asBool()); } if (jsonLayer.isMember("flipHorizontal")) { geometry.SetFlipHorizontal(jsonLayer["flipHorizontal"].asBool()); } } }