/**
 * Stone of Orthanc
 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
 * Department, University Hospital of Liege, Belgium
 * Copyright (C) 2017-2019 Osimis S.A., Belgium
 *
 * This program is free software: you can redistribute it and/or
 * modify it under the terms of the GNU Affero General Public License
 * as published by the Free Software Foundation, either version 3 of
 * the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful, but
 * WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 * Affero General Public License for more details.
 * 
 * You should have received a copy of the GNU Affero General Public License
 * along with this program. If not, see <http://www.gnu.org/licenses/>.
 **/


#include "DicomStructureSetLoader.h"

#include "../Scene2D/PolylineSceneLayer.h"
#include "../Toolbox/GeometryToolbox.h"

#if 0
bool logbgo233 = false;
bool logbgo115 = false;
#endif

namespace OrthancStone
{

#if 0
  void DumpDicomMap(std::ostream& o, const Orthanc::DicomMap& dicomMap)
  {
    using namespace std;
    //ios_base::fmtflags state = o.flags();
    //o.flags(ios::right | ios::hex);
    //o << "(" << setfill('0') << setw(4) << tag.GetGroup()
    //  << "," << setw(4) << tag.GetElement() << ")";
    //o.flags(state);
    Json::Value val;
    dicomMap.Serialize(val);
    o << val;
    //return o;
  }
#endif


  class DicomStructureSetLoader::AddReferencedInstance : public LoaderStateMachine::State
  {
  private:
    std::string instanceId_;
      
  public:
    AddReferencedInstance(DicomStructureSetLoader& that,
                          const std::string& instanceId) :
      State(that),
      instanceId_(instanceId)
    {
    }

    virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message)
    {
      Json::Value tags;
      message.ParseJsonBody(tags);
        
      Orthanc::DicomMap dicom;
      dicom.FromDicomAsJson(tags);

      DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();

      loader.content_->AddReferencedSlice(dicom);

      loader.countProcessedInstances_ ++;
      assert(loader.countProcessedInstances_ <= loader.countReferencedInstances_);

      if (loader.countProcessedInstances_ == loader.countReferencedInstances_)
      {
        // All the referenced instances have been loaded, finalize the RT-STRUCT
        loader.content_->CheckReferencedSlices();
        loader.revision_++;
        loader.SetStructuresReady();
      }
    }
  };


  // State that converts a "SOP Instance UID" to an Orthanc identifier
  class DicomStructureSetLoader::LookupInstance : public LoaderStateMachine::State
  {
  private:
    std::string  sopInstanceUid_;
      
  public:
    LookupInstance(DicomStructureSetLoader& that,
                   const std::string& sopInstanceUid) :
      State(that),
      sopInstanceUid_(sopInstanceUid)
    {
    }

    virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message)
    {
#if 0
      LOG(TRACE) << "DicomStructureSetLoader::LookupInstance::Handle() (SUCCESS)";
#endif
      DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();

      Json::Value lookup;
      message.ParseJsonBody(lookup);

      if (lookup.type() != Json::arrayValue ||
          lookup.size() != 1 ||
          !lookup[0].isMember("Type") ||
          !lookup[0].isMember("Path") ||
          lookup[0]["Type"].type() != Json::stringValue ||
          lookup[0]["ID"].type() != Json::stringValue ||
          lookup[0]["Type"].asString() != "Instance")
      {
        std::stringstream msg;
        msg << "Unknown resource! message.GetAnswer() = " << message.GetAnswer() << " message.GetAnswerHeaders() = ";
        for (OrthancRestApiCommand::HttpHeaders::const_iterator it = message.GetAnswerHeaders().begin();
             it != message.GetAnswerHeaders().end(); ++it)
        {
          msg << "\nkey: \"" << it->first << "\" value: \"" << it->second << "\"\n";
        }
        const std::string msgStr = msg.str();
        LOG(ERROR) << msgStr;
        throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);          
      }

      const std::string instanceId = lookup[0]["ID"].asString();

      {
        std::auto_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
        command->SetHttpHeader("Accept-Encoding", "gzip");
        std::string uri = "/instances/" + instanceId + "/tags";
        command->SetUri(uri);
        command->SetPayload(new AddReferencedInstance(loader, instanceId));
        Schedule(command.release());
      }
    }
  };


  class DicomStructureSetLoader::LoadStructure : public LoaderStateMachine::State
  {
  public:
    LoadStructure(DicomStructureSetLoader& that) :
    State(that)
    {
    }


    virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message)
    {
#if 0
      if (logbgo115)
        LOG(TRACE) << "DicomStructureSetLoader::LoadStructure::Handle() (SUCCESS)";
#endif
      DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
        
      {
        OrthancPlugins::FullOrthancDataset dicom(message.GetAnswer());
        loader.content_.reset(new DicomStructureSet(dicom));
      }

      // Some (admittedly invalid) Dicom files have empty values in the 
      // 0008,1155 tag. We try our best to cope with this.
      std::set<std::string> instances;
      std::set<std::string> nonEmptyInstances;
      loader.content_->GetReferencedInstances(instances);
      for (std::set<std::string>::const_iterator
        it = instances.begin(); it != instances.end(); ++it)
      {
        std::string instance = Orthanc::Toolbox::StripSpaces(*it);
        if(instance != "")
          nonEmptyInstances.insert(instance);
      }

      loader.countReferencedInstances_ = 
        static_cast<unsigned int>(nonEmptyInstances.size());

      for (std::set<std::string>::const_iterator
        it = nonEmptyInstances.begin(); it != nonEmptyInstances.end(); ++it)
      {
        std::auto_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
        command->SetUri("/tools/lookup");
        command->SetMethod(Orthanc::HttpMethod_Post);
        command->SetBody(*it);
        command->SetPayload(new LookupInstance(loader, *it));
        Schedule(command.release());
      }
    }
  };
    

  class DicomStructureSetLoader::Slice : public IExtractedSlice
  {
  private:
    const DicomStructureSet&  content_;
    uint64_t                  revision_;
    bool                      isValid_;
      
  public:
    Slice(const DicomStructureSet& content,
          uint64_t revision,
          const CoordinateSystem3D& cuttingPlane) :
      content_(content),
      revision_(revision)
    {
      bool opposite;

      const Vector normal = content.GetNormal();
      isValid_ = (
        GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetNormal()) ||
        GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisX()) ||
        GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisY()));
    }
      
    virtual bool IsValid()
    {
      return isValid_;
    }

    virtual uint64_t GetRevision()
    {
      return revision_;
    }

    virtual ISceneLayer* CreateSceneLayer(const ILayerStyleConfigurator* configurator,
                                          const CoordinateSystem3D& cuttingPlane)
    {
      assert(isValid_);

      std::auto_ptr<PolylineSceneLayer> layer(new PolylineSceneLayer);
      layer->SetThickness(2);

      for (size_t i = 0; i < content_.GetStructuresCount(); i++)
      {
        const Color& color = content_.GetStructureColor(i);

#ifdef USE_BOOST_UNION_FOR_POLYGONS 
        std::vector< std::vector<Point2D> > polygons;
          
        if (content_.ProjectStructure(polygons, i, cuttingPlane))
        {
          for (size_t j = 0; j < polygons.size(); j++)
          {
            PolylineSceneLayer::Chain chain;
            chain.resize(polygons[j].size());
            
            for (size_t k = 0; k < polygons[j].size(); k++)
            {
              chain[k] = ScenePoint2D(polygons[j][k].x, polygons[j][k].y);
            }

            layer->AddChain(chain, true /* closed */, color);
          }
        }
#else
        std::vector< std::pair<Point2D, Point2D> > segments;

        if (content_.ProjectStructure(segments, i, cuttingPlane))
        {
          for (size_t j = 0; j < segments.size(); j++)
          {
            PolylineSceneLayer::Chain chain;
            chain.resize(2);

            chain[0] = ScenePoint2D(segments[j].first.x, segments[j].first.y);
            chain[1] = ScenePoint2D(segments[j].second.x, segments[j].second.y);

            layer->AddChain(chain, false /* NOT closed */, color);
          }
        }
#endif
      }

      return layer.release();
    }
  };
    

  DicomStructureSetLoader::DicomStructureSetLoader(IOracle& oracle,
                                                   IObservable& oracleObservable) :
    LoaderStateMachine(oracle, oracleObservable),
    IObservable(oracleObservable.GetBroker()),
    revision_(0),
    countProcessedInstances_(0),
    countReferencedInstances_(0),
    structuresReady_(false)
  {
  }
    
    
  DicomStructureSetLoader::~DicomStructureSetLoader()
  {
    LOG(TRACE) << "DicomStructureSetLoader::~DicomStructureSetLoader()";
  }

  void DicomStructureSetLoader::LoadInstance(const std::string& instanceId)
  {
    Start();
      
    instanceId_ = instanceId;
      
    {
      std::auto_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
      command->SetHttpHeader("Accept-Encoding", "gzip");

      std::string uri = "/instances/" + instanceId + "/tags?ignore-length=3006-0050";

      command->SetUri(uri);
      command->SetPayload(new LoadStructure(*this));
      Schedule(command.release());
    }
  }


  IVolumeSlicer::IExtractedSlice* DicomStructureSetLoader::ExtractSlice(const CoordinateSystem3D& cuttingPlane)
  {
    if (content_.get() == NULL)
    {
      // Geometry is not available yet
      return new IVolumeSlicer::InvalidSlice;
    }
    else
    {
      return new Slice(*content_, revision_, cuttingPlane);
    }
  }

  void DicomStructureSetLoader::SetStructuresReady()
  {
    ORTHANC_ASSERT(!structuresReady_);
    structuresReady_ = true;
    BroadcastMessage(DicomStructureSetLoader::StructuresReady(*this));
  }

  bool DicomStructureSetLoader::AreStructuresReady() const
  {
    return structuresReady_;
  }

}