--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Framework/Deprecated/Toolbox/MessagingToolbox.cpp	Tue May 28 08:49:49 2019 +0200
@@ -0,0 +1,456 @@
+/**
+ * Stone of Orthanc
+ * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
+ * Department, University Hospital of Liege, Belgium
+ * Copyright (C) 2017-2019 Osimis S.A., Belgium
+ *
+ * This program is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU Affero General Public License
+ * as published by the Free Software Foundation, either version 3 of
+ * the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * Affero General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ **/
+
+
+#include "MessagingToolbox.h"
+
+#include <Core/Images/Image.h>
+#include <Core/Images/ImageProcessing.h>
+#include <Core/Images/JpegReader.h>
+#include <Core/Images/PngReader.h>
+#include <Core/OrthancException.h>
+#include <Core/Toolbox.h>
+#include <Core/Logging.h>
+
+#include <boost/lexical_cast.hpp>
+#include <json/reader.h>
+#include <json/writer.h>
+
+namespace Deprecated
+{
+  namespace MessagingToolbox
+  {
+    static bool ParseVersion(std::string& version,
+                             unsigned int& major,
+                             unsigned int& minor,
+                             unsigned int& patch,
+                             const Json::Value& info)
+    {
+      if (info.type() != Json::objectValue ||
+          !info.isMember("Version") ||
+          info["Version"].type() != Json::stringValue)
+      {
+        return false;
+      }
+
+      version = info["Version"].asString();
+      if (version == "mainline")
+      {
+        // Some arbitrary high values Orthanc versions will never reach ;)
+        major = 999;
+        minor = 999;
+        patch = 999;
+        return true;
+      }
+
+      std::vector<std::string> tokens;
+      Orthanc::Toolbox::TokenizeString(tokens, version, '.');
+      
+      if (tokens.size() != 2 &&
+          tokens.size() != 3)
+      {
+        return false;
+      }
+
+      int a, b, c;
+      try
+      {
+        a = boost::lexical_cast<int>(tokens[0]);
+        b = boost::lexical_cast<int>(tokens[1]);
+
+        if (tokens.size() == 3)
+        {
+          c = boost::lexical_cast<int>(tokens[2]);
+        }
+        else
+        {
+          c = 0;
+        }
+      }
+      catch (boost::bad_lexical_cast&)
+      {
+        return false;
+      }
+
+      if (a < 0 ||
+          b < 0 ||
+          c < 0)
+      {
+        return false;
+      }
+      else
+      {
+        major = static_cast<unsigned int>(a);
+        minor = static_cast<unsigned int>(b);
+        patch = static_cast<unsigned int>(c);
+        return true;
+      }         
+    }
+
+
+    bool ParseJson(Json::Value& target,
+                   const void* content,
+                   size_t size)
+    {
+      Json::Reader reader;
+      return reader.parse(reinterpret_cast<const char*>(content),
+                          reinterpret_cast<const char*>(content) + size,
+                          target);
+    }
+
+    void JsonToString(std::string& target,
+                      const Json::Value& source)
+    {
+      Json::FastWriter writer;
+      target = writer.write(source);
+    }
+
+    static void ParseJsonException(Json::Value& target,
+                                   const std::string& source)
+    {
+      Json::Reader reader;
+      if (!reader.parse(source, target))
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
+      }
+    }
+
+
+    void RestApiGet(Json::Value& target,
+                    OrthancPlugins::IOrthancConnection& orthanc,
+                    const std::string& uri)
+    {
+      std::string tmp;
+      orthanc.RestApiGet(tmp, uri);
+      ParseJsonException(target, tmp);
+    }
+
+
+    void RestApiPost(Json::Value& target,
+                     OrthancPlugins::IOrthancConnection& orthanc,
+                     const std::string& uri,
+                     const std::string& body)
+    {
+      std::string tmp;
+      orthanc.RestApiPost(tmp, uri, body);
+      ParseJsonException(target, tmp);
+    }
+
+
+    bool HasWebViewerInstalled(OrthancPlugins::IOrthancConnection& orthanc)
+    {
+      try
+      {
+        Json::Value json;
+        RestApiGet(json, orthanc, "/plugins/web-viewer");
+        return json.type() == Json::objectValue;
+      }
+      catch (Orthanc::OrthancException&)
+      {
+        return false;
+      }
+    }
+
+
+    bool CheckOrthancVersion(OrthancPlugins::IOrthancConnection& orthanc)
+    {
+      Json::Value json;
+      std::string version;
+      unsigned int major, minor, patch;
+
+      try
+      {
+        RestApiGet(json, orthanc, "/system");
+      }
+      catch (Orthanc::OrthancException&)
+      {
+        LOG(ERROR) << "Cannot connect to your Orthanc server";
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+      }
+        
+      if (!ParseVersion(version, major, minor, patch, json))
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+      }
+
+      LOG(WARNING) << "Version of the Orthanc core (must be above 1.3.1): " << version;
+
+      // Stone is only compatible with Orthanc >= 1.3.1
+      if (major < 1 ||
+          (major == 1 && minor < 3) ||
+          (major == 1 && minor == 3 && patch < 1))
+      {
+        return false;
+      }
+
+      try
+      {
+        RestApiGet(json, orthanc, "/plugins/web-viewer");       
+      }
+      catch (Orthanc::OrthancException&)
+      {
+        // The Web viewer is not installed, this is OK
+        LOG(WARNING) << "The Web viewer plugin is not installed, progressive download is disabled";
+        return true;
+      }
+
+      if (!ParseVersion(version, major, minor, patch, json))
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+      }
+
+      LOG(WARNING) << "Version of the Web viewer plugin (must be above 2.2): " << version;
+
+      return (major >= 3 ||
+              (major == 2 && minor >= 2));
+    }
+
+
+    Orthanc::ImageAccessor* DecodeFrame(OrthancPlugins::IOrthancConnection& orthanc,
+                                        const std::string& instance,
+                                        unsigned int frame,
+                                        Orthanc::PixelFormat targetFormat)
+    {
+      std::string uri = ("instances/" + instance + "/frames/" + 
+                         boost::lexical_cast<std::string>(frame));
+
+      std::string compressed;
+
+      switch (targetFormat)
+      {
+        case Orthanc::PixelFormat_RGB24:
+          orthanc.RestApiGet(compressed, uri + "/preview");
+          break;
+
+        case Orthanc::PixelFormat_Grayscale16:
+          orthanc.RestApiGet(compressed, uri + "/image-uint16");
+          break;
+
+        case Orthanc::PixelFormat_SignedGrayscale16:
+          orthanc.RestApiGet(compressed, uri + "/image-int16");
+          break;
+
+        default:
+          throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
+      }
+      
+      std::auto_ptr<Orthanc::PngReader> result(new Orthanc::PngReader);
+      result->ReadFromMemory(compressed);
+
+      if (targetFormat == Orthanc::PixelFormat_SignedGrayscale16)
+      {
+        if (result->GetFormat() == Orthanc::PixelFormat_Grayscale16)
+        {
+          result->SetFormat(Orthanc::PixelFormat_SignedGrayscale16);
+        }
+        else
+        {
+          throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+        }
+      }
+
+      return result.release();
+    }
+
+
+    Orthanc::ImageAccessor* DecodeJpegFrame(OrthancPlugins::IOrthancConnection& orthanc,
+                                            const std::string& instance,
+                                            unsigned int frame,
+                                            unsigned int quality,
+                                            Orthanc::PixelFormat targetFormat)
+    {
+      if (quality <= 0 || 
+          quality > 100)
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
+      }
+
+      // This requires the official Web viewer plugin to be installed!
+      std::string uri = ("web-viewer/instances/jpeg" + 
+                         boost::lexical_cast<std::string>(quality) + 
+                         "-" + instance + "_" + 
+                         boost::lexical_cast<std::string>(frame));
+
+      Json::Value encoded;
+      RestApiGet(encoded, orthanc, uri);
+
+      if (encoded.type() != Json::objectValue ||
+          !encoded.isMember("Orthanc") ||
+          encoded["Orthanc"].type() != Json::objectValue)
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+      }
+
+      Json::Value& info = encoded["Orthanc"];
+      if (!info.isMember("PixelData") ||
+          !info.isMember("Stretched") ||
+          !info.isMember("Compression") ||
+          info["Compression"].type() != Json::stringValue ||
+          info["PixelData"].type() != Json::stringValue ||
+          info["Stretched"].type() != Json::booleanValue ||
+          info["Compression"].asString() != "Jpeg")
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+      }          
+
+      bool isSigned = false;
+      bool isStretched = info["Stretched"].asBool();
+
+      if (info.isMember("IsSigned"))
+      {
+        if (info["IsSigned"].type() != Json::booleanValue)
+        {
+          throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+        }          
+        else
+        {
+          isSigned = info["IsSigned"].asBool();
+        }
+      }
+
+      std::string jpeg;
+      Orthanc::Toolbox::DecodeBase64(jpeg, info["PixelData"].asString());
+
+      std::auto_ptr<Orthanc::JpegReader> reader(new Orthanc::JpegReader);
+      reader->ReadFromMemory(jpeg);
+
+      if (reader->GetFormat() == Orthanc::PixelFormat_RGB24)  // This is a color image
+      {
+        if (targetFormat != Orthanc::PixelFormat_RGB24)
+        {
+          throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+        }
+
+        if (isSigned || isStretched)
+        {
+          throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
+        }
+        else
+        {
+          return reader.release();
+        }
+      }
+
+      if (reader->GetFormat() != Orthanc::PixelFormat_Grayscale8)
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
+      }
+
+      if (!isStretched)
+      {
+        if (targetFormat != reader->GetFormat())
+        {
+          throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+        }
+
+        return reader.release();
+      }
+
+      int32_t stretchLow = 0;
+      int32_t stretchHigh = 0;
+
+      if (!info.isMember("StretchLow") ||
+          !info.isMember("StretchHigh") ||
+          info["StretchLow"].type() != Json::intValue ||
+          info["StretchHigh"].type() != Json::intValue)
+      {
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
+      }
+
+      stretchLow = info["StretchLow"].asInt();
+      stretchHigh = info["StretchHigh"].asInt();
+
+      if (stretchLow < -32768 ||
+          stretchHigh > 65535 ||
+          (stretchLow < 0 && stretchHigh > 32767))
+      {
+        // This range cannot be represented with a uint16_t or an int16_t
+        throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);          
+      }
+
+      // Decode a grayscale JPEG 8bpp image coming from the Web viewer
+      std::auto_ptr<Orthanc::ImageAccessor> image
+        (new Orthanc::Image(targetFormat, reader->GetWidth(), reader->GetHeight(), false));
+
+      float scaling = static_cast<float>(stretchHigh - stretchLow) / 255.0f;
+      float offset = static_cast<float>(stretchLow) / scaling;
+      
+      Orthanc::ImageProcessing::Convert(*image, *reader);
+      Orthanc::ImageProcessing::ShiftScale(*image, offset, scaling, true);
+
+#if 0
+      /*info.removeMember("PixelData");
+        std::cout << info.toStyledString();*/
+      
+      int64_t a, b;
+      Orthanc::ImageProcessing::GetMinMaxValue(a, b, *image);
+      std::cout << stretchLow << "->" << stretchHigh << " = " << a << "->" << b << std::endl;
+#endif
+
+      return image.release();
+    }
+
+
+    static void AddTag(Orthanc::DicomMap& target,
+                       const OrthancPlugins::IDicomDataset& source,
+                       const Orthanc::DicomTag& tag)
+    {
+      OrthancPlugins::DicomTag key(tag.GetGroup(), tag.GetElement());
+      
+      std::string value;
+      if (source.GetStringValue(value, key))
+      {
+        target.SetValue(tag, value, false);
+      }
+    }
+
+    
+    void ConvertDataset(Orthanc::DicomMap& target,
+                        const OrthancPlugins::IDicomDataset& source)
+    {
+      target.Clear();
+
+      AddTag(target, source, Orthanc::DICOM_TAG_BITS_ALLOCATED);
+      AddTag(target, source, Orthanc::DICOM_TAG_BITS_STORED);
+      AddTag(target, source, Orthanc::DICOM_TAG_COLUMNS);
+      AddTag(target, source, Orthanc::DICOM_TAG_DOSE_GRID_SCALING);
+      AddTag(target, source, Orthanc::DICOM_TAG_FRAME_INCREMENT_POINTER);
+      AddTag(target, source, Orthanc::DICOM_TAG_GRID_FRAME_OFFSET_VECTOR);
+      AddTag(target, source, Orthanc::DICOM_TAG_HIGH_BIT);
+      AddTag(target, source, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT);
+      AddTag(target, source, Orthanc::DICOM_TAG_IMAGE_POSITION_PATIENT);
+      AddTag(target, source, Orthanc::DICOM_TAG_NUMBER_OF_FRAMES);
+      AddTag(target, source, Orthanc::DICOM_TAG_PHOTOMETRIC_INTERPRETATION);
+      AddTag(target, source, Orthanc::DICOM_TAG_PIXEL_REPRESENTATION);
+      AddTag(target, source, Orthanc::DICOM_TAG_PIXEL_SPACING);
+      AddTag(target, source, Orthanc::DICOM_TAG_PLANAR_CONFIGURATION);
+      AddTag(target, source, Orthanc::DICOM_TAG_RESCALE_INTERCEPT);
+      AddTag(target, source, Orthanc::DICOM_TAG_RESCALE_SLOPE);
+      AddTag(target, source, Orthanc::DICOM_TAG_ROWS);
+      AddTag(target, source, Orthanc::DICOM_TAG_SAMPLES_PER_PIXEL);
+      AddTag(target, source, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID);
+      AddTag(target, source, Orthanc::DICOM_TAG_SLICE_THICKNESS);
+      AddTag(target, source, Orthanc::DICOM_TAG_SOP_CLASS_UID);
+      AddTag(target, source, Orthanc::DICOM_TAG_SOP_INSTANCE_UID);
+      AddTag(target, source, Orthanc::DICOM_TAG_WINDOW_CENTER);
+      AddTag(target, source, Orthanc::DICOM_TAG_WINDOW_WIDTH);
+    }
+  }
+}