annotate OrthancStone/Resources/Graveyard/RTStructTentativeReimplementation-BGO/DicomStructureSetSlicer2.cpp @ 2142:ff1aefb43763

sync
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 16 Aug 2024 14:58:47 +0200
parents 16c01cc201e7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
1 /**
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
2 * Stone of Orthanc
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
2124
16c01cc201e7 updated copyright, as Osimis is not active on Orthanc anymore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2114
diff changeset
5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
2114
c23eef785569 update year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2077
diff changeset
6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
7 *
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
9 * modify it under the terms of the GNU Lesser General Public License
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
11 * the License, or (at your option) any later version.
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
12 *
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
16 * Lesser General Public License for more details.
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
17 *
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
18 * You should have received a copy of the GNU Lesser General Public
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
19 * License along with this program. If not, see
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
20 * <http://www.gnu.org/licenses/>.
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
21 **/
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
22
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
23 #ifdef BGO_ENABLE_DICOMSTRUCTURESETLOADER2
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
24
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
25 #include "DicomStructureSetSlicer2.h"
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
26
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
27 #include "../Toolbox/GeometryToolbox.h"
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
28 #include "../Volumes/IVolumeSlicer.h"
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
29 #include "../Scene2D/PolylineSceneLayer.h"
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
30
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
31 namespace OrthancStone
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
32 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
33 DicomStructureSetSlicer2::DicomStructureSetSlicer2(boost::shared_ptr<DicomStructureSet2> structureSet)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
34 : structureSet_(structureSet)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
35 {}
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
36
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
37 IVolumeSlicer::IExtractedSlice* DicomStructureSetSlicer2::ExtractSlice(const CoordinateSystem3D& cuttingPlane)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
38 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
39 // revision is always the same, hence 0
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
40 return new DicomStructureSetSlice2(structureSet_, 0, cuttingPlane);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
41 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
42
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
43 DicomStructureSetSlice2::DicomStructureSetSlice2(
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
44 boost::weak_ptr<DicomStructureSet2> structureSet,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
45 uint64_t revision,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
46 const CoordinateSystem3D& cuttingPlane)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
47 : structureSet_(structureSet.lock())
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
48 , isValid_(false)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
49 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
50 bool opposite = false;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
51
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
52 if (structureSet_->GetStructuresCount() == 0)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
53 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
54 isValid_ = false;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
55 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
56 else
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
57 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
58 // some structures seen in real life have no polygons. We must be
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
59 // careful
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
60 bool found = false;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
61 size_t curStructure = 0;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
62 while (!found && curStructure < structureSet_->GetStructuresCount())
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
63 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
64 if (structureSet_->GetStructure(curStructure).IsValid())
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
65 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
66 found = true;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
67 const Vector normal = structureSet_->GetStructure(0).GetNormal();
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
68 isValid_ = (
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
69 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetNormal()) ||
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
70 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisX()) ||
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
71 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisY()));
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
72 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
73 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
74 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
75 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
76
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
77 ISceneLayer* DicomStructureSetSlice2::CreateSceneLayer(
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
78 const ILayerStyleConfigurator* configurator,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
79 const CoordinateSystem3D& cuttingPlane)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
80 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
81 assert(isValid_);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
82
1298
8a0a62189f46 replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1270
diff changeset
83 std::unique_ptr<PolylineSceneLayer> layer(new PolylineSceneLayer);
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
84 layer->SetThickness(2); // thickness of the on-screen line
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
85
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
86 for (size_t i = 0; i < structureSet_->GetStructuresCount(); i++)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
87 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
88 const DicomStructure2& structure = structureSet_->GetStructure(i);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
89 if (structure.IsValid())
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
90 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
91 const Color& color = structure.GetColor();
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
92
1895
14c8f339d480 removed redundant definitions Point2D, Point3D and Vector3D from DicomStructureSetUtils.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
93 std::vector< std::pair<ScenePoint2D, ScenePoint2D> > segments;
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
94
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
95 if (structure.Project(segments, cuttingPlane))
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
96 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
97 for (size_t j = 0; j < segments.size(); j++)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
98 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
99 PolylineSceneLayer::Chain chain;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
100 chain.resize(2);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
101
1895
14c8f339d480 removed redundant definitions Point2D, Point3D and Vector3D from DicomStructureSetUtils.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
102 chain[0] = ScenePoint2D(segments[j].first.GetX(), segments[j].first.GetY());
14c8f339d480 removed redundant definitions Point2D, Point3D and Vector3D from DicomStructureSetUtils.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
103 chain[1] = ScenePoint2D(segments[j].second.GetX(), segments[j].second.GetY());
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
104
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
105 layer->AddChain(chain, false /* NOT closed */, color);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
106 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
107 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
108 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
109 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
110 return layer.release();
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
111 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
112 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
113
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
114
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
115 #endif
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
116 // BGO_ENABLE_DICOMSTRUCTURESETLOADER2
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
117
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
118