Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Loaders/SeriesFramesLoader.cpp @ 1729:f62f5ee5a432
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 02 Dec 2020 07:08:29 +0100 |
parents | 0257339b0884 |
children | 9ac2a65d4172 |
rev | line source |
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1 /** |
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2 * Stone of Orthanc |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
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11 * |
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12 * This program is distributed in the hope that it will be useful, but |
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * Lesser General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "SeriesFramesLoader.h" |
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24 |
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25 #include "../Oracle/ParseDicomFromFileCommand.h" |
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26 #include "../Oracle/ParseDicomFromWadoCommand.h" |
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27 |
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28 #if ORTHANC_ENABLE_DCMTK == 1 |
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29 # include <DicomParsing/ParsedDicomFile.h> |
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30 #endif |
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31 |
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32 #include <DicomFormat/DicomInstanceHasher.h> |
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33 #include <Images/Image.h> |
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34 #include <Images/ImageProcessing.h> |
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35 #include <Images/JpegReader.h> |
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36 |
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37 #include <boost/algorithm/string/predicate.hpp> |
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38 |
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39 namespace OrthancStone |
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40 { |
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41 class SeriesFramesLoader::Payload : public Orthanc::IDynamicObject |
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42 { |
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43 private: |
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44 DicomSource source_; |
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45 size_t seriesIndex_; |
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46 std::string sopInstanceUid_; // Only used for debug purpose |
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47 unsigned int quality_; |
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48 bool hasWindowing_; |
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49 float windowingCenter_; |
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50 float windowingWidth_; |
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51 std::unique_ptr<Orthanc::IDynamicObject> userPayload_; |
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52 |
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53 public: |
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54 Payload(const DicomSource& source, |
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55 size_t seriesIndex, |
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56 const std::string& sopInstanceUid, |
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57 unsigned int quality, |
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58 Orthanc::IDynamicObject* userPayload) : |
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59 source_(source), |
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60 seriesIndex_(seriesIndex), |
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61 sopInstanceUid_(sopInstanceUid), |
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62 quality_(quality), |
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63 hasWindowing_(false), |
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65 windowingWidth_(0), | |
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66 userPayload_(userPayload) |
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67 { |
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68 } |
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69 |
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70 size_t GetSeriesIndex() const |
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71 { |
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72 return seriesIndex_; |
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73 } |
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74 |
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75 const std::string& GetSopInstanceUid() const |
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76 { |
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77 return sopInstanceUid_; |
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78 } |
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79 |
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80 unsigned int GetQuality() const |
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81 { |
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82 return quality_; |
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83 } |
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84 |
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85 void SetWindowing(float center, |
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86 float width) |
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87 { |
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88 hasWindowing_ = true; |
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89 windowingCenter_ = center; |
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90 windowingWidth_ = width; |
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91 } |
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92 |
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93 bool HasWindowing() const |
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94 { |
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95 return hasWindowing_; |
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96 } |
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97 |
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98 float GetWindowingCenter() const |
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99 { |
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100 if (hasWindowing_) |
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101 { |
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102 return windowingCenter_; |
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103 } |
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104 else |
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105 { |
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106 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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107 } |
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108 } |
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109 |
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110 float GetWindowingWidth() const |
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111 { |
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112 if (hasWindowing_) |
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113 { |
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114 return windowingWidth_; |
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115 } |
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116 else |
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117 { |
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118 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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119 } |
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120 } |
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121 |
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122 const DicomSource& GetSource() const |
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123 { |
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124 return source_; |
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125 } |
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126 |
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127 Orthanc::IDynamicObject* GetUserPayload() const |
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128 { |
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129 return userPayload_.get(); |
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130 } |
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131 }; |
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132 |
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133 |
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134 SeriesFramesLoader::SeriesFramesLoader(ILoadersContext& context, |
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135 LoadedDicomResources& instances, |
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136 const std::string& dicomDirPath, |
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137 boost::shared_ptr<LoadedDicomResources> dicomDir) : |
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138 context_(context), |
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139 frames_(instances), |
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140 dicomDirPath_(dicomDirPath), |
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141 dicomDir_(dicomDir) |
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142 { |
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143 } |
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144 |
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145 |
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146 void SeriesFramesLoader::EmitMessage(const Payload& payload, |
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147 const Orthanc::ImageAccessor& image) |
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148 { |
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149 const DicomInstanceParameters& parameters = frames_.GetInstanceParameters(payload.GetSeriesIndex()); |
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150 const Orthanc::DicomMap& instance = frames_.GetInstance(payload.GetSeriesIndex()); |
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151 size_t frameIndex = frames_.GetFrameIndex(payload.GetSeriesIndex()); |
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152 |
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153 if (frameIndex >= parameters.GetImageInformation().GetNumberOfFrames() || |
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154 payload.GetSopInstanceUid() != parameters.GetSopInstanceUid()) |
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155 { |
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156 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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157 } |
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158 |
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159 LOG(TRACE) << "Decoded instance " << payload.GetSopInstanceUid() << ", frame " |
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160 << frameIndex << ": " << image.GetWidth() << "x" |
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161 << image.GetHeight() << ", " << Orthanc::EnumerationToString(image.GetFormat()) |
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162 << ", quality " << payload.GetQuality(); |
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163 |
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164 FrameLoadedMessage message(*this, frameIndex, payload.GetQuality(), image, instance, parameters, payload.GetUserPayload()); |
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165 BroadcastMessage(message); |
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166 } |
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167 |
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168 |
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169 #if ORTHANC_ENABLE_DCMTK == 1 |
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170 void SeriesFramesLoader::HandleDicom(const Payload& payload, |
1571 | 171 const Orthanc::ParsedDicomFile& dicom) |
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172 { |
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173 size_t frameIndex = frames_.GetFrameIndex(payload.GetSeriesIndex()); |
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174 |
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175 std::unique_ptr<Orthanc::ImageAccessor> decoded; |
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176 decoded.reset(dicom.DecodeFrame(static_cast<unsigned int>(frameIndex))); |
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177 |
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178 if (decoded.get() == NULL) |
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179 { |
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180 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer); |
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181 } |
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182 |
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183 EmitMessage(payload, *decoded); |
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184 } |
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185 #endif |
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186 |
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187 |
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188 void SeriesFramesLoader::HandleDicomWebRendered(const Payload& payload, |
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189 const std::string& body, |
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190 const std::map<std::string, std::string>& headers) |
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191 { |
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192 assert(payload.GetSource().IsDicomWeb() && |
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193 payload.HasWindowing()); |
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194 |
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195 bool ok = false; |
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196 for (std::map<std::string, std::string>::const_iterator it = headers.begin(); |
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197 it != headers.end(); ++it) |
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198 { |
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199 if (boost::iequals("content-type", it->first) && |
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200 boost::iequals(Orthanc::MIME_JPEG, it->second)) |
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201 { |
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202 ok = true; |
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203 break; |
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204 } |
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205 } |
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206 |
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207 if (!ok) |
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208 { |
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209 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, |
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210 "The WADO-RS server has not generated a JPEG image on /rendered"); |
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211 } |
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212 |
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213 Orthanc::JpegReader reader; |
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214 reader.ReadFromMemory(body); |
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215 |
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216 switch (reader.GetFormat()) |
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217 { |
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218 case Orthanc::PixelFormat_RGB24: |
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219 EmitMessage(payload, reader); |
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220 break; |
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221 |
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222 case Orthanc::PixelFormat_Grayscale8: |
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223 { |
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224 const DicomInstanceParameters& parameters = frames_.GetInstanceParameters(payload.GetSeriesIndex()); |
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225 |
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226 Orthanc::Image scaled(parameters.GetExpectedPixelFormat(), reader.GetWidth(), reader.GetHeight(), false); |
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227 Orthanc::ImageProcessing::Convert(scaled, reader); |
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228 |
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229 float w = payload.GetWindowingWidth(); |
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230 if (w <= 0.01f) |
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231 { |
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232 w = 0.01f; // Prevent division by zero |
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233 } |
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234 |
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235 const float c = payload.GetWindowingCenter(); |
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236 const float scaling = w / 255.0f; |
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237 const float offset = (c - w / 2.0f) / scaling; |
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238 |
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239 Orthanc::ImageProcessing::ShiftScale(scaled, offset, scaling, false /* truncation to speed up */); |
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240 EmitMessage(payload, scaled); |
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241 break; |
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242 } |
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243 |
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244 default: |
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245 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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246 } |
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247 } |
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248 |
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249 |
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250 #if ORTHANC_ENABLE_DCMTK == 1 |
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251 void SeriesFramesLoader::Handle(const ParseDicomSuccessMessage& message) |
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252 { |
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253 assert(message.GetOrigin().HasPayload()); |
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254 |
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255 const Payload& payload = dynamic_cast<const Payload&>(message.GetOrigin().GetPayload()); |
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256 if ((payload.GetSource().IsDicomDir() || |
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257 payload.GetSource().IsDicomWeb()) && |
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258 message.HasPixelData()) |
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259 { |
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260 HandleDicom(dynamic_cast<const Payload&>(message.GetOrigin().GetPayload()), message.GetDicom()); |
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261 } |
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262 else |
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263 { |
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264 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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265 } |
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266 } |
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267 #endif |
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268 |
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269 |
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270 void SeriesFramesLoader::Handle(const GetOrthancImageCommand::SuccessMessage& message) |
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271 { |
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272 assert(message.GetOrigin().HasPayload()); |
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273 |
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274 const Payload& payload = dynamic_cast<const Payload&>(message.GetOrigin().GetPayload()); |
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275 assert(payload.GetSource().IsOrthanc()); |
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276 |
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277 EmitMessage(payload, message.GetImage()); |
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278 } |
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279 |
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280 |
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281 void SeriesFramesLoader::Handle(const GetOrthancWebViewerJpegCommand::SuccessMessage& message) |
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282 { |
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283 assert(message.GetOrigin().HasPayload()); |
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284 |
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285 const Payload& payload = dynamic_cast<const Payload&>(message.GetOrigin().GetPayload()); |
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286 assert(payload.GetSource().IsOrthanc()); |
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287 |
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288 EmitMessage(payload, message.GetImage()); |
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289 } |
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290 |
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291 |
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292 void SeriesFramesLoader::Handle(const OrthancRestApiCommand::SuccessMessage& message) |
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293 { |
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294 // This is to handle "/rendered" in DICOMweb |
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295 assert(message.GetOrigin().HasPayload()); |
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296 HandleDicomWebRendered(dynamic_cast<const Payload&>(message.GetOrigin().GetPayload()), |
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297 message.GetAnswer(), message.GetAnswerHeaders()); |
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298 } |
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299 |
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300 |
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301 void SeriesFramesLoader::Handle(const HttpCommand::SuccessMessage& message) |
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302 { |
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303 // This is to handle "/rendered" in DICOMweb |
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304 assert(message.GetOrigin().HasPayload()); |
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305 HandleDicomWebRendered(dynamic_cast<const Payload&>(message.GetOrigin().GetPayload()), |
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306 message.GetAnswer(), message.GetAnswerHeaders()); |
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307 } |
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308 |
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309 |
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310 Orthanc::IDynamicObject& SeriesFramesLoader::FrameLoadedMessage::GetUserPayload() const |
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311 { |
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312 if (userPayload_) |
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313 { |
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314 return *userPayload_; |
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315 } |
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316 else |
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317 { |
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318 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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319 } |
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320 } |
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321 |
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322 |
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323 void SeriesFramesLoader::Factory::SetDicomDir(const std::string& dicomDirPath, |
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324 boost::shared_ptr<LoadedDicomResources> dicomDir) |
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325 { |
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326 dicomDirPath_ = dicomDirPath; |
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327 dicomDir_ = dicomDir; |
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328 } |
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329 |
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330 |
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331 boost::shared_ptr<IObserver> SeriesFramesLoader::Factory::Create(ILoadersContext::ILock& stone) |
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332 { |
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333 boost::shared_ptr<SeriesFramesLoader> loader( |
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334 new SeriesFramesLoader(stone.GetContext(), instances_, dicomDirPath_, dicomDir_)); |
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335 loader->Register<GetOrthancImageCommand::SuccessMessage>(stone.GetOracleObservable(), &SeriesFramesLoader::Handle); |
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336 loader->Register<GetOrthancWebViewerJpegCommand::SuccessMessage>(stone.GetOracleObservable(), &SeriesFramesLoader::Handle); |
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337 loader->Register<HttpCommand::SuccessMessage>(stone.GetOracleObservable(), &SeriesFramesLoader::Handle); |
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338 loader->Register<OrthancRestApiCommand::SuccessMessage>(stone.GetOracleObservable(), &SeriesFramesLoader::Handle); |
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339 |
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340 #if ORTHANC_ENABLE_DCMTK == 1 |
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341 loader->Register<ParseDicomSuccessMessage>(stone.GetOracleObservable(), &SeriesFramesLoader::Handle); |
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342 #endif |
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343 |
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344 return loader; |
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345 } |
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346 |
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347 |
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348 void SeriesFramesLoader::ScheduleLoadFrame(int priority, |
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349 const DicomSource& source, |
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350 size_t index, |
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351 unsigned int quality, |
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352 Orthanc::IDynamicObject* userPayload) |
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353 { |
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354 std::unique_ptr<Orthanc::IDynamicObject> protection(userPayload); |
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355 |
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356 if (index >= frames_.GetFramesCount() || |
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357 quality >= source.GetQualityCount()) |
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358 { |
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359 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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360 } |
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361 |
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362 const Orthanc::DicomMap& instance = frames_.GetInstance(index); |
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363 |
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364 std::string sopInstanceUid; |
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365 if (!instance.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false)) |
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366 { |
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367 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
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368 "Missing SOPInstanceUID in a DICOM instance"); |
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369 } |
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370 |
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371 if (source.IsDicomDir()) |
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372 { |
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373 if (dicomDir_.get() == NULL) |
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374 { |
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375 // Should have been set in the factory |
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376 throw Orthanc::OrthancException( |
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377 Orthanc::ErrorCode_BadSequenceOfCalls, |
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378 "SeriesFramesLoader::Factory::SetDicomDir() should have been called"); |
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379 } |
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380 |
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381 assert(quality == 0); |
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382 |
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383 std::string file; |
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384 if (dicomDir_->LookupStringValue(file, sopInstanceUid, Orthanc::DICOM_TAG_REFERENCED_FILE_ID)) |
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385 { |
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386 std::unique_ptr<ParseDicomFromFileCommand> command(new ParseDicomFromFileCommand(source, dicomDirPath_, file)); |
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387 command->SetPixelDataIncluded(true); |
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388 command->AcquirePayload(new Payload(source, index, sopInstanceUid, quality, protection.release())); |
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389 |
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390 { |
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391 std::unique_ptr<ILoadersContext::ILock> lock(context_.Lock()); |
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392 lock->Schedule(GetSharedObserver(), priority, command.release()); |
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393 } |
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394 } |
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395 else |
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396 { |
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397 LOG(WARNING) << "Missing tag ReferencedFileID in a DICOMDIR entry"; |
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398 } |
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399 } |
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400 else if (source.IsDicomWeb()) |
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401 { |
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402 std::string studyInstanceUid, seriesInstanceUid; |
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403 if (!instance.LookupStringValue(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, false) || |
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404 !instance.LookupStringValue(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false)) |
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405 { |
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406 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
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407 "Missing StudyInstanceUID or SeriesInstanceUID in a DICOM instance"); |
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408 } |
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409 |
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410 const std::string uri = ("/studies/" + studyInstanceUid + |
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411 "/series/" + seriesInstanceUid + |
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412 "/instances/" + sopInstanceUid); |
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413 |
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414 if (source.HasDicomWebRendered() && |
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415 quality == 0) |
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416 { |
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417 const DicomInstanceParameters& parameters = frames_.GetInstanceParameters(index); |
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418 |
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419 float c, w; |
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420 parameters.GetWindowingPresetsUnion(c, w); |
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421 |
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422 std::map<std::string, std::string> arguments, headers; |
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423 arguments["window"] = (boost::lexical_cast<std::string>(c) + "," + |
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424 boost::lexical_cast<std::string>(w) + ",linear"); |
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425 headers["Accept"] = "image/jpeg"; |
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426 |
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427 std::unique_ptr<Payload> payload(new Payload(source, index, sopInstanceUid, quality, protection.release())); |
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428 payload->SetWindowing(c, w); |
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429 |
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430 { |
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431 std::unique_ptr<ILoadersContext::ILock> lock(context_.Lock()); |
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432 lock->Schedule(GetSharedObserver(), priority, |
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433 source.CreateDicomWebCommand(uri + "/rendered", arguments, headers, payload.release())); |
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434 } |
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435 } |
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436 else |
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437 { |
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438 assert((source.HasDicomWebRendered() && quality == 1) || |
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439 (!source.HasDicomWebRendered() && quality == 0)); |
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440 |
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441 #if ORTHANC_ENABLE_DCMTK == 1 |
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442 std::unique_ptr<Payload> payload(new Payload(source, index, sopInstanceUid, quality, protection.release())); |
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443 |
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444 const std::map<std::string, std::string> empty; |
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445 |
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446 std::unique_ptr<ParseDicomFromWadoCommand> command( |
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447 new ParseDicomFromWadoCommand(source, sopInstanceUid, false /* no server-side transcoding */, |
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448 Orthanc::DicomTransferSyntax_LittleEndianExplicit /* dummy value */, |
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449 source.CreateDicomWebCommand(uri, empty, empty, NULL))); |
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450 command->AcquirePayload(payload.release()); |
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451 |
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452 { |
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453 std::unique_ptr<ILoadersContext::ILock> lock(context_.Lock()); |
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454 lock->Schedule(GetSharedObserver(), priority, command.release()); |
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455 } |
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456 #else |
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457 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, |
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458 "DCMTK is not enabled, cannot parse a DICOM instance"); |
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459 #endif |
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460 } |
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461 } |
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462 else if (source.IsOrthanc()) |
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463 { |
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464 std::string orthancId; |
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465 |
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466 { |
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467 std::string patientId, studyInstanceUid, seriesInstanceUid; |
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468 if (!instance.LookupStringValue(patientId, Orthanc::DICOM_TAG_PATIENT_ID, false) || |
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469 !instance.LookupStringValue(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, false) || |
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470 !instance.LookupStringValue(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false)) |
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471 { |
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472 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
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473 "Missing StudyInstanceUID or SeriesInstanceUID in a DICOM instance"); |
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474 } |
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475 |
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476 Orthanc::DicomInstanceHasher hasher(patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid); |
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477 orthancId = hasher.HashInstance(); |
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478 } |
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479 |
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480 const DicomInstanceParameters& parameters = frames_.GetInstanceParameters(index); |
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481 |
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482 if (quality == 0 && source.HasOrthancWebViewer1()) |
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483 { |
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484 std::unique_ptr<GetOrthancWebViewerJpegCommand> command(new GetOrthancWebViewerJpegCommand); |
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485 command->SetInstance(orthancId); |
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486 command->SetExpectedPixelFormat(parameters.GetExpectedPixelFormat()); |
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487 command->AcquirePayload(new Payload(source, index, sopInstanceUid, quality, protection.release())); |
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488 |
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489 { |
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490 std::unique_ptr<ILoadersContext::ILock> lock(context_.Lock()); |
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491 lock->Schedule(GetSharedObserver(), priority, command.release()); |
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492 } |
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493 } |
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494 else if (quality == 0 && source.HasOrthancAdvancedPreview()) |
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495 { |
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496 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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497 } |
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498 else |
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499 { |
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500 assert(quality <= 1); |
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501 assert(quality == 0 || |
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502 source.HasOrthancWebViewer1() || |
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503 source.HasOrthancAdvancedPreview()); |
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504 |
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505 std::unique_ptr<GetOrthancImageCommand> command(new GetOrthancImageCommand); |
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506 command->SetFrameUri(orthancId, frames_.GetFrameIndex(index), parameters.GetExpectedPixelFormat()); |
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507 command->SetExpectedPixelFormat(parameters.GetExpectedPixelFormat()); |
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508 command->SetHttpHeader("Accept", Orthanc::MIME_PAM); |
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509 command->AcquirePayload(new Payload(source, index, sopInstanceUid, quality, protection.release())); |
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510 |
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511 { |
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512 std::unique_ptr<ILoadersContext::ILock> lock(context_.Lock()); |
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513 lock->Schedule(GetSharedObserver(), priority, command.release()); |
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514 } |
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515 } |
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516 } |
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517 else |
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518 { |
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519 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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520 } |
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521 } |
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522 } |