Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Toolbox/DicomInstanceParameters.h @ 1615:f5d4bd7b5593
new class: OsiriXLayerFactory
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 30 Oct 2020 17:26:44 +0100 |
| parents | 8563ea5d8ae4 |
| children | a4418a489e86 |
| rev | line source |
|---|---|
| 746 | 1 /** |
| 2 * Stone of Orthanc | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
|
1270
2d8ab34c8c91
upgrade to year 2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 746 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
|
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
8 * modify it under the terms of the GNU Lesser General Public License |
| 746 | 9 * as published by the Free Software Foundation, either version 3 of |
| 10 * the License, or (at your option) any later version. | |
| 11 * | |
| 12 * This program is distributed in the hope that it will be useful, but | |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
|
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
|
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
15 * Lesser General Public License for more details. |
|
1596
4fb8fdf03314
removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1571
diff
changeset
|
16 * |
|
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
17 * You should have received a copy of the GNU Lesser General Public |
|
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
18 * License along with this program. If not, see |
|
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
19 * <http://www.gnu.org/licenses/>. |
| 746 | 20 **/ |
| 21 | |
| 22 | |
| 23 #pragma once | |
| 24 | |
| 25 #include "../StoneEnumerations.h" | |
|
768
55411e7da2f7
LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
746
diff
changeset
|
26 #include "../Scene2D/LookupTableTextureSceneLayer.h" |
| 746 | 27 #include "../Toolbox/CoordinateSystem3D.h" |
| 28 | |
|
1455
30deba7bc8e2
simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1279
diff
changeset
|
29 #include <IDynamicObject.h> |
|
30deba7bc8e2
simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1279
diff
changeset
|
30 #include <DicomFormat/DicomImageInformation.h> |
| 746 | 31 |
| 32 namespace OrthancStone | |
| 33 { | |
| 34 class DicomInstanceParameters : | |
| 35 public Orthanc::IDynamicObject /* to be used as a payload to SlicesSorter */ | |
| 36 { | |
| 37 // This class supersedes the deprecated "DicomFrameConverter" | |
| 38 | |
| 39 private: | |
| 40 struct Data // Struct to ease the copy constructor | |
| 41 { | |
| 42 std::string orthancInstanceId_; | |
| 43 std::string studyInstanceUid_; | |
| 44 std::string seriesInstanceUid_; | |
| 45 std::string sopInstanceUid_; | |
| 46 Orthanc::DicomImageInformation imageInformation_; | |
| 47 SopClassUid sopClassUid_; | |
| 48 double thickness_; | |
| 49 double pixelSpacingX_; | |
| 50 double pixelSpacingY_; | |
| 51 CoordinateSystem3D geometry_; | |
| 52 Vector frameOffsets_; | |
| 53 bool isColor_; | |
| 54 bool hasRescale_; | |
| 55 double rescaleIntercept_; | |
| 56 double rescaleSlope_; | |
| 57 bool hasDefaultWindowing_; | |
| 58 float defaultWindowingCenter_; | |
| 59 float defaultWindowingWidth_; | |
| 60 Orthanc::PixelFormat expectedPixelFormat_; | |
|
980
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
61 bool hasIndexInSeries_; |
|
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
62 unsigned int indexInSeries_; |
|
1091
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
63 std::string doseUnits_; |
|
1141
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
64 double doseGridScaling_; |
| 746 | 65 |
| 66 void ComputeDoseOffsets(const Orthanc::DicomMap& dicom); | |
| 67 | |
| 1571 | 68 explicit Data(const Orthanc::DicomMap& dicom); |
| 746 | 69 |
| 70 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const; | |
| 71 | |
| 72 bool IsPlaneWithinSlice(unsigned int frame, | |
| 73 const CoordinateSystem3D& plane) const; | |
| 74 | |
|
1159
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
75 void ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image, |
|
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
76 bool useDouble) const; |
|
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
77 |
|
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
78 double ApplyRescale(double value) const; |
|
1161
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
79 |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
80 bool ComputeRegularSpacing(double& target) const; |
| 746 | 81 }; |
| 82 | |
| 83 | |
| 84 Data data_; | |
| 85 | |
| 86 | |
| 87 public: | |
| 1571 | 88 explicit DicomInstanceParameters(const DicomInstanceParameters& other) : |
| 89 data_(other.data_) | |
| 746 | 90 { |
| 91 } | |
| 92 | |
| 1571 | 93 explicit DicomInstanceParameters(const Orthanc::DicomMap& dicom) : |
| 746 | 94 data_(dicom) |
| 95 { | |
| 96 } | |
| 97 | |
|
782
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
98 DicomInstanceParameters* Clone() const |
|
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
99 { |
|
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
100 return new DicomInstanceParameters(*this); |
|
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
101 } |
|
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
102 |
| 746 | 103 void SetOrthancInstanceIdentifier(const std::string& id) |
| 104 { | |
| 105 data_.orthancInstanceId_ = id; | |
| 106 } | |
| 107 | |
| 108 const std::string& GetOrthancInstanceIdentifier() const | |
| 109 { | |
| 110 return data_.orthancInstanceId_; | |
| 111 } | |
| 112 | |
| 113 const Orthanc::DicomImageInformation& GetImageInformation() const | |
| 114 { | |
| 115 return data_.imageInformation_; | |
| 116 } | |
| 117 | |
| 118 const std::string& GetStudyInstanceUid() const | |
| 119 { | |
| 120 return data_.studyInstanceUid_; | |
| 121 } | |
| 122 | |
| 123 const std::string& GetSeriesInstanceUid() const | |
| 124 { | |
| 125 return data_.seriesInstanceUid_; | |
| 126 } | |
| 127 | |
| 128 const std::string& GetSopInstanceUid() const | |
| 129 { | |
| 130 return data_.sopInstanceUid_; | |
| 131 } | |
| 132 | |
| 133 SopClassUid GetSopClassUid() const | |
| 134 { | |
| 135 return data_.sopClassUid_; | |
| 136 } | |
| 137 | |
| 138 double GetThickness() const | |
| 139 { | |
| 140 return data_.thickness_; | |
| 141 } | |
| 142 | |
| 143 double GetPixelSpacingX() const | |
| 144 { | |
| 145 return data_.pixelSpacingX_; | |
| 146 } | |
| 147 | |
| 148 double GetPixelSpacingY() const | |
| 149 { | |
| 150 return data_.pixelSpacingY_; | |
| 151 } | |
| 152 | |
| 153 const CoordinateSystem3D& GetGeometry() const | |
| 154 { | |
| 155 return data_.geometry_; | |
| 156 } | |
| 157 | |
| 158 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const | |
| 159 { | |
| 160 return data_.GetFrameGeometry(frame); | |
| 161 } | |
| 162 | |
| 163 bool IsPlaneWithinSlice(unsigned int frame, | |
| 164 const CoordinateSystem3D& plane) const | |
| 165 { | |
| 166 return data_.IsPlaneWithinSlice(frame, plane); | |
| 167 } | |
| 168 | |
| 169 bool IsColor() const | |
| 170 { | |
| 171 return data_.isColor_; | |
| 172 } | |
| 173 | |
| 174 bool HasRescale() const | |
| 175 { | |
| 176 return data_.hasRescale_; | |
| 177 } | |
| 178 | |
| 179 double GetRescaleIntercept() const; | |
| 180 | |
| 181 double GetRescaleSlope() const; | |
| 182 | |
| 183 bool HasDefaultWindowing() const | |
| 184 { | |
| 185 return data_.hasDefaultWindowing_; | |
| 186 } | |
| 187 | |
| 188 float GetDefaultWindowingCenter() const; | |
| 189 | |
| 190 float GetDefaultWindowingWidth() const; | |
| 191 | |
| 192 Orthanc::PixelFormat GetExpectedPixelFormat() const | |
| 193 { | |
| 194 return data_.expectedPixelFormat_; | |
| 195 } | |
| 196 | |
|
1016
78a516d5ead5
making DicomInstanceParameters::ConvertToFloat() public
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
980
diff
changeset
|
197 Orthanc::ImageAccessor* ConvertToFloat(const Orthanc::ImageAccessor& pixelData) const; |
|
78a516d5ead5
making DicomInstanceParameters::ConvertToFloat() public
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
980
diff
changeset
|
198 |
| 746 | 199 TextureBaseSceneLayer* CreateTexture(const Orthanc::ImageAccessor& pixelData) const; |
|
768
55411e7da2f7
LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
746
diff
changeset
|
200 |
|
55411e7da2f7
LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
746
diff
changeset
|
201 LookupTableTextureSceneLayer* CreateLookupTableTexture(const Orthanc::ImageAccessor& pixelData) const; |
|
980
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
202 |
|
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
203 bool HasIndexInSeries() const |
|
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
204 { |
|
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
205 return data_.hasIndexInSeries_; |
|
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
206 } |
|
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
207 |
|
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
208 unsigned int GetIndexInSeries() const; |
|
1091
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
209 |
|
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
210 const std::string& GetDoseUnits() const |
|
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
211 { |
|
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
212 return data_.doseUnits_; |
|
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
213 } |
|
1141
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
214 |
|
1161
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
215 void SetDoseGridScaling(double value) |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
216 { |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
217 data_.doseGridScaling_ = value; |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
218 } |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
219 |
|
1141
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
220 double GetDoseGridScaling() const |
|
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
221 { |
|
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
222 return data_.doseGridScaling_; |
|
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
223 } |
|
1159
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
224 |
|
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
225 double ApplyRescale(double value) const |
|
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
226 { |
|
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
227 return data_.ApplyRescale(value); |
|
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
228 } |
|
1161
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
229 |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
230 // Required for RT-DOSE |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
231 bool ComputeRegularSpacing(double& target) const |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
232 { |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
233 return data_.ComputeRegularSpacing(target); |
|
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
234 } |
| 746 | 235 }; |
| 236 } |