annotate Framework/Toolbox/DicomFrameConverter.h @ 334:c34784e5f299 am-2

compatibility fixes
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 18 Oct 2018 09:02:24 +0200
parents c80b5bddf86b
children b3b3fa0e3689
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
134
4cff7b1ed31d upgrade to year 2018
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
10 * the License, or (at your option) any later version.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
15 * Affero General Public License for more details.
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
16 *
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #pragma once
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
212
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
24 #include <Core/DicomFormat/DicomMap.h>
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
25 #include <Core/Images/ImageAccessor.h>
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
32
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
27 #include <memory>
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 namespace OrthancStone
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 /**
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 * This class is responsible for converting the pixel format of a
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 * DICOM frame coming from Orthanc, into a pixel format that is
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 * suitable for Stone, given the relevant DICOM tags:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 * - Color frames will stay in the RGB24 format.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 * - Grayscale frames will be converted to the Float32 format.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 **/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 class DicomFrameConverter
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 private:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 bool isSigned_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 bool isColor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 bool hasRescale_;
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
44 double rescaleIntercept_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
45 double rescaleSlope_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
46 double defaultWindowCenter_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
47 double defaultWindowWidth_;
328
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
48
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
49 Orthanc::PhotometricInterpretation photometric_;
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
50 Orthanc::PixelFormat expectedPixelFormat_;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 void SetDefaultParameters();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 public:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 DicomFrameConverter()
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 SetDefaultParameters();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
60 Orthanc::PixelFormat GetExpectedPixelFormat() const
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
61 {
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
62 return expectedPixelFormat_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
63 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
328
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
65 Orthanc::PhotometricInterpretation GetPhotometricInterpretation() const
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
66 {
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
67 return photometric_;
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
68 }
c80b5bddf86b support of monochrome1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
69
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
70 void ReadParameters(const Orthanc::DicomMap& dicom);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
72 double GetDefaultWindowCenter() const
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 return defaultWindowCenter_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
77 double GetDefaultWindowWidth() const
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 return defaultWindowWidth_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
148
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
82 double GetRescaleIntercept() const
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
83 {
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
84 return rescaleIntercept_;
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
85 }
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
86
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
87 double GetRescaleSlope() const
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
88 {
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
89 return rescaleSlope_;
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
90 }
c6a464c266dd accessors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
91
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
92 void ConvertFrame(std::auto_ptr<Orthanc::ImageAccessor>& source) const;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
93
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
94 void ApplyRescale(Orthanc::ImageAccessor& image,
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
95 bool useDouble) const;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
96
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
97 double Apply(double x) const;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }