Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Loaders/SeriesMetadataLoader.cpp @ 1553:bf02a90ca9ca
not diagnostic text
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 17 Aug 2020 13:25:54 +0200 |
parents | 244ad1e4e76a |
children | 85e117739eca |
rev | line source |
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1 /** |
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2 * Stone of Orthanc |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU Affero General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
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11 * |
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12 * This program is distributed in the hope that it will be useful, but |
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * Affero General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU Affero General Public License |
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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19 **/ |
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20 |
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21 |
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22 #include "SeriesMetadataLoader.h" |
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23 |
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24 #include <DicomFormat/DicomInstanceHasher.h> |
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25 |
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26 namespace OrthancStone |
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27 { |
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28 SeriesMetadataLoader::SeriesMetadataLoader(boost::shared_ptr<DicomResourcesLoader>& loader) : |
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29 loader_(loader), |
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30 state_(State_Setup) |
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31 { |
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32 } |
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33 |
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34 |
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35 bool SeriesMetadataLoader::IsScheduledWithHigherPriority(const std::string& seriesInstanceUid, |
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36 int priority) const |
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37 { |
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38 if (series_.find(seriesInstanceUid) != series_.end()) |
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39 { |
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40 // This series is readily available |
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41 return true; |
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42 } |
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43 else |
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44 { |
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45 std::map<std::string, int>::const_iterator found = scheduled_.find(seriesInstanceUid); |
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46 |
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47 return (found != scheduled_.end() && |
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48 found->second < priority); |
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49 } |
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50 } |
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51 |
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52 |
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53 void SeriesMetadataLoader::Handle(const DicomResourcesLoader::SuccessMessage& message) |
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54 { |
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55 assert(message.GetResources()); |
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56 |
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57 switch (state_) |
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58 { |
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59 case State_Setup: |
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60 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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61 |
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62 case State_Default: |
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63 { |
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64 std::string studyInstanceUid; |
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65 std::string seriesInstanceUid; |
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66 |
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67 if (message.GetResources()->LookupTagValueConsensus(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID) && |
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68 message.GetResources()->LookupTagValueConsensus(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID)) |
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69 { |
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70 series_[seriesInstanceUid] = message.GetResources(); |
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71 |
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72 SuccessMessage loadedMessage(*this, message.GetDicomSource(), studyInstanceUid, |
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73 seriesInstanceUid, *message.GetResources()); |
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74 BroadcastMessage(loadedMessage); |
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75 } |
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76 |
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77 break; |
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78 } |
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79 |
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80 case State_DicomDir: |
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81 { |
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82 assert(!dicomDir_); |
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83 assert(seriesSize_.empty()); |
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84 |
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85 dicomDir_ = message.GetResources(); |
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86 |
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87 for (size_t i = 0; i < message.GetResources()->GetSize(); i++) |
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88 { |
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89 std::string seriesInstanceUid; |
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90 if (message.GetResources()->GetResource(i).LookupStringValue |
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91 (seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false)) |
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92 { |
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93 boost::shared_ptr<OrthancStone::LoadedDicomResources> target |
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94 (new OrthancStone::LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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95 |
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96 if (loader_->ScheduleLoadDicomFile(target, message.GetPriority(), message.GetDicomSource(), dicomDirPath_, |
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97 message.GetResources()->GetResource(i), false /* no need for pixel data */, |
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98 NULL /* TODO PAYLOAD */)) |
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99 { |
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100 std::map<std::string, unsigned int>::iterator found = seriesSize_.find(seriesInstanceUid); |
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101 if (found == seriesSize_.end()) |
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102 { |
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103 series_[seriesInstanceUid].reset |
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104 (new OrthancStone::LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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105 seriesSize_[seriesInstanceUid] = 1; |
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106 } |
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107 else |
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108 { |
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109 found->second ++; |
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110 } |
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111 } |
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112 } |
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113 } |
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114 |
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115 LOG(INFO) << "Read a DICOMDIR containing " << seriesSize_.size() << " series"; |
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116 |
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117 state_ = State_DicomFile; |
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118 break; |
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119 } |
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120 |
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121 case State_DicomFile: |
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122 { |
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123 assert(dicomDir_); |
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124 assert(message.GetResources()->GetSize() <= 1); // Could be zero if corrupted DICOM instance |
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125 |
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126 if (message.GetResources()->GetSize() == 1) |
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127 { |
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128 const Orthanc::DicomMap& instance = message.GetResources()->GetResource(0); |
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129 |
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130 std::string studyInstanceUid; |
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131 std::string seriesInstanceUid; |
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132 if (instance.LookupStringValue(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, false) && |
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133 instance.LookupStringValue(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false)) |
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134 { |
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135 Series::const_iterator series = series_.find(seriesInstanceUid); |
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136 std::map<std::string, unsigned int>::const_iterator size = seriesSize_.find(seriesInstanceUid); |
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137 |
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138 if (series == series_.end() || |
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139 size == seriesSize_.end()) |
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140 { |
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141 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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142 } |
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143 else |
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144 { |
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145 series->second->AddResource(instance); |
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146 |
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147 if (series->second->GetSize() > size->second) |
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148 { |
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149 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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150 } |
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151 else if (series->second->GetSize() == size->second) |
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152 { |
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153 // The series is complete |
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154 SuccessMessage loadedMessage( |
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155 *this, message.GetDicomSource(), |
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156 studyInstanceUid, seriesInstanceUid, *series->second); |
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157 loadedMessage.SetDicomDir(dicomDirPath_, dicomDir_); |
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158 BroadcastMessage(loadedMessage); |
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159 } |
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160 } |
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161 } |
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162 } |
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163 |
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164 break; |
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165 } |
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166 |
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167 default: |
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168 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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169 } |
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170 } |
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171 |
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172 |
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173 SeriesMetadataLoader::SuccessMessage::SuccessMessage( |
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174 const SeriesMetadataLoader& loader, |
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175 const DicomSource& source, |
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176 const std::string& studyInstanceUid, |
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177 const std::string& seriesInstanceUid, |
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178 LoadedDicomResources& instances) : |
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179 OriginMessage(loader), |
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180 source_(source), |
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181 studyInstanceUid_(studyInstanceUid), |
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182 seriesInstanceUid_(seriesInstanceUid), |
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183 instances_(instances) |
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184 { |
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185 LOG(INFO) << "Loaded series " << seriesInstanceUid |
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186 << ", number of instances: " << instances_.GetSize(); |
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187 } |
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188 |
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189 |
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190 boost::shared_ptr<SeriesMetadataLoader> SeriesMetadataLoader::Create(ILoadersContext::ILock& context) |
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191 { |
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192 boost::shared_ptr<DicomResourcesLoader> loader(DicomResourcesLoader::Create(context)); |
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193 |
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194 boost::shared_ptr<SeriesMetadataLoader> obj(new SeriesMetadataLoader(loader)); |
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195 obj->Register<DicomResourcesLoader::SuccessMessage>(*loader, &SeriesMetadataLoader::Handle); |
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196 return obj; |
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197 } |
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198 |
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199 |
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200 SeriesMetadataLoader::Accessor::Accessor(SeriesMetadataLoader& that, |
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201 const std::string& seriesInstanceUid) |
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202 { |
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203 Series::const_iterator found = that.series_.find(seriesInstanceUid); |
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204 if (found != that.series_.end()) |
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205 { |
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206 assert(found->second != NULL); |
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207 series_ = found->second; |
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208 } |
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209 } |
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210 |
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211 |
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212 size_t SeriesMetadataLoader::Accessor::GetInstancesCount() const |
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213 { |
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214 if (IsComplete()) |
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215 { |
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216 return series_->GetSize(); |
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217 } |
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218 else |
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219 { |
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220 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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221 } |
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222 } |
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223 |
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224 |
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225 const Orthanc::DicomMap& SeriesMetadataLoader::Accessor::GetInstance(size_t index) const |
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226 { |
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227 if (IsComplete()) |
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228 { |
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229 return series_->GetResource(index); |
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230 } |
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231 else |
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232 { |
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233 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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234 } |
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235 } |
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236 |
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237 |
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238 void SeriesMetadataLoader::ScheduleLoadSeries(int priority, |
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239 const DicomSource& source, |
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240 const std::string& studyInstanceUid, |
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241 const std::string& seriesInstanceUid) |
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242 { |
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243 if (state_ != State_Setup && |
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244 state_ != State_Default) |
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245 { |
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246 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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247 "The loader is working in DICOMDIR state"); |
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248 } |
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249 |
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250 state_ = State_Default; |
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251 |
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252 // Only re-schedule the loading if the previous loading was with lower priority |
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253 if (!IsScheduledWithHigherPriority(seriesInstanceUid, priority)) |
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254 { |
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255 if (source.IsDicomWeb()) |
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256 { |
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257 boost::shared_ptr<LoadedDicomResources> target |
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258 (new LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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259 loader_->ScheduleGetDicomWeb( |
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260 target, priority, source, |
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261 "/studies/" + studyInstanceUid + "/series/" + seriesInstanceUid + "/metadata", |
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262 NULL /* TODO PAYLOAD */); |
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263 |
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264 scheduled_[seriesInstanceUid] = priority; |
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265 } |
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266 else if (source.IsOrthanc()) |
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267 { |
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268 // This flavor of the method is only available with DICOMweb, as |
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269 // Orthanc requires the "PatientID" to be known |
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270 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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271 "The PatientID must be provided on Orthanc sources"); |
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272 } |
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273 else |
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274 { |
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275 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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276 } |
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277 } |
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278 } |
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279 |
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280 |
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281 void SeriesMetadataLoader::ScheduleLoadSeries(int priority, |
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282 const DicomSource& source, |
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283 const std::string& patientId, |
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284 const std::string& studyInstanceUid, |
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285 const std::string& seriesInstanceUid) |
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286 { |
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287 if (state_ != State_Setup && |
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288 state_ != State_Default) |
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289 { |
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290 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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291 "The loader is working in DICOMDIR state"); |
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292 } |
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293 |
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294 state_ = State_Default; |
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295 |
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296 if (source.IsDicomWeb()) |
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297 { |
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298 ScheduleLoadSeries(priority, source, studyInstanceUid, seriesInstanceUid); |
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299 } |
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300 else if (!IsScheduledWithHigherPriority(seriesInstanceUid, priority)) |
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301 { |
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302 if (source.IsOrthanc()) |
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303 { |
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304 // Dummy SOP Instance UID, as we are working at the "series" level |
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305 Orthanc::DicomInstanceHasher hasher(patientId, studyInstanceUid, seriesInstanceUid, "dummy"); |
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306 |
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307 boost::shared_ptr<LoadedDicomResources> target |
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308 (new LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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309 |
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310 loader_->ScheduleLoadOrthancResources(target, priority, source, Orthanc::ResourceType_Series, |
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311 hasher.HashSeries(), Orthanc::ResourceType_Instance, |
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312 NULL /* TODO PAYLOAD */); |
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313 |
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314 scheduled_[seriesInstanceUid] = priority; |
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315 } |
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316 else |
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317 { |
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318 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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319 } |
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320 } |
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321 } |
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322 |
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323 |
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324 void SeriesMetadataLoader::ScheduleLoadDicomDir(int priority, |
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325 const DicomSource& source, |
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326 const std::string& path) |
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327 { |
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328 if (!source.IsDicomDir()) |
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329 { |
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330 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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331 } |
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332 |
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333 if (state_ != State_Setup) |
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334 { |
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335 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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336 "The loader cannot load two different DICOMDIR"); |
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337 } |
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338 |
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339 state_ = State_DicomDir; |
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340 dicomDirPath_ = path; |
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341 boost::shared_ptr<LoadedDicomResources> dicomDir |
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342 (new LoadedDicomResources(Orthanc::DICOM_TAG_REFERENCED_SOP_INSTANCE_UID_IN_FILE)); |
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343 loader_->ScheduleLoadDicomDir(dicomDir, priority, source, path, |
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344 NULL /* TODO PAYLOAD */); |
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345 } |
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346 } |