Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Volumes/VolumeImageGeometry.cpp @ 1979:b31e494e34c5
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 29 Oct 2022 17:10:21 +0200 |
parents | 7053b8a0aaec |
children | 07964689cb0b |
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1 /** |
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2 * Stone of Orthanc |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
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21 **/ |
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22 |
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23 |
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24 #include "VolumeImageGeometry.h" |
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25 |
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26 #include "../Toolbox/GeometryToolbox.h" |
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27 |
1624 | 28 #include <Logging.h> |
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29 #include <OrthancException.h> |
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30 |
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31 |
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32 namespace OrthancStone |
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33 { |
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34 void VolumeImageGeometry::Invalidate() |
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35 { |
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36 Vector p = (axialGeometry_.GetOrigin() + |
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37 static_cast<double>(depth_ - 1) * voxelDimensions_[2] * axialGeometry_.GetNormal()); |
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38 |
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39 coronalGeometry_ = CoordinateSystem3D(p, |
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40 axialGeometry_.GetAxisX(), |
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41 -axialGeometry_.GetNormal()); |
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42 |
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43 sagittalGeometry_ = CoordinateSystem3D(p, |
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44 axialGeometry_.GetAxisY(), |
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45 -axialGeometry_.GetNormal()); |
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46 |
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47 Vector origin = ( |
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48 axialGeometry_.MapSliceToWorldCoordinates(-0.5 * voxelDimensions_[0], |
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49 -0.5 * voxelDimensions_[1]) - |
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50 0.5 * voxelDimensions_[2] * axialGeometry_.GetNormal()); |
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51 |
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52 LOG(TRACE) << "VolumeImageGeometry::Invalidate() origin = " << origin(0) << "," << origin(1) << "," << origin(2) << " | width_ = " << width_ << " | height_ = " << height_ << " | depth_ = " << depth_; |
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53 |
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54 Vector scaling; |
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55 |
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56 if (width_ == 0 || |
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57 height_ == 0 || |
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58 depth_ == 0) |
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59 { |
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60 LinearAlgebra::AssignVector(scaling, 1, 1, 1); |
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61 } |
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62 else |
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63 { |
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64 scaling = ( |
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65 axialGeometry_.GetAxisX() * voxelDimensions_[0] * static_cast<double>(width_) + |
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66 axialGeometry_.GetAxisY() * voxelDimensions_[1] * static_cast<double>(height_) + |
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67 axialGeometry_.GetNormal() * voxelDimensions_[2] * static_cast<double>(depth_)); |
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68 } |
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69 |
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70 transform_ = LinearAlgebra::Product( |
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71 GeometryToolbox::CreateTranslationMatrix(origin[0], origin[1], origin[2]), |
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72 GeometryToolbox::CreateScalingMatrix(scaling[0], scaling[1], scaling[2])); |
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73 |
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74 LinearAlgebra::InvertMatrix(transformInverse_, transform_); |
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75 } |
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76 |
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77 |
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78 VolumeImageGeometry::VolumeImageGeometry() : |
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79 width_(0), |
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80 height_(0), |
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81 depth_(0) |
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82 { |
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83 LinearAlgebra::AssignVector(voxelDimensions_, 1, 1, 1); |
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84 Invalidate(); |
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85 } |
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86 |
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87 |
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88 void VolumeImageGeometry::SetSizeInVoxels(unsigned int width, |
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89 unsigned int height, |
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90 unsigned int depth) |
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91 { |
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92 width_ = width; |
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93 height_ = height; |
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94 depth_ = depth; |
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95 Invalidate(); |
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96 } |
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97 |
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98 |
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99 void VolumeImageGeometry::SetAxialGeometry(const CoordinateSystem3D& geometry) |
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100 { |
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101 axialGeometry_ = geometry; |
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102 Invalidate(); |
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103 } |
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104 |
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105 |
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106 void VolumeImageGeometry::SetVoxelDimensions(double x, |
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107 double y, |
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108 double z) |
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109 { |
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110 if (x <= 0 || |
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111 y <= 0 || |
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112 z <= 0) |
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113 { |
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114 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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115 } |
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116 else |
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117 { |
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118 LinearAlgebra::AssignVector(voxelDimensions_, x, y, z); |
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119 Invalidate(); |
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120 } |
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121 } |
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122 |
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123 |
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124 const CoordinateSystem3D& VolumeImageGeometry::GetProjectionGeometry(VolumeProjection projection) const |
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125 { |
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126 switch (projection) |
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127 { |
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128 case VolumeProjection_Axial: |
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129 return axialGeometry_; |
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130 |
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131 case VolumeProjection_Coronal: |
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132 return coronalGeometry_; |
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133 |
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134 case VolumeProjection_Sagittal: |
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135 return sagittalGeometry_; |
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136 |
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137 default: |
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138 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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139 } |
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140 } |
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141 |
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142 |
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143 Vector VolumeImageGeometry::GetVoxelDimensions(VolumeProjection projection) const |
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144 { |
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145 switch (projection) |
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146 { |
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147 case VolumeProjection_Axial: |
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148 return voxelDimensions_; |
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149 |
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150 case VolumeProjection_Coronal: |
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151 return LinearAlgebra::CreateVector(voxelDimensions_[0], voxelDimensions_[2], voxelDimensions_[1]); |
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152 |
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153 case VolumeProjection_Sagittal: |
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154 return LinearAlgebra::CreateVector(voxelDimensions_[1], voxelDimensions_[2], voxelDimensions_[0]); |
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155 |
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156 default: |
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157 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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158 } |
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159 } |
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160 |
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161 |
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162 unsigned int VolumeImageGeometry::GetProjectionWidth(VolumeProjection projection) const |
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163 { |
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164 switch (projection) |
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165 { |
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166 case VolumeProjection_Axial: |
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167 return width_; |
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168 |
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169 case VolumeProjection_Coronal: |
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170 return width_; |
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171 |
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172 case VolumeProjection_Sagittal: |
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173 return height_; |
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174 |
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175 default: |
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176 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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177 } |
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178 } |
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179 |
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180 |
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181 unsigned int VolumeImageGeometry::GetProjectionHeight(VolumeProjection projection) const |
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182 { |
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183 switch (projection) |
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184 { |
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185 case VolumeProjection_Axial: |
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186 return height_; |
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187 |
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188 case VolumeProjection_Coronal: |
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189 return depth_; |
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190 |
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191 case VolumeProjection_Sagittal: |
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192 return depth_; |
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193 |
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194 default: |
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195 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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196 } |
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197 } |
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198 |
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199 |
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200 unsigned int VolumeImageGeometry::GetProjectionDepth(VolumeProjection projection) const |
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201 { |
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202 switch (projection) |
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203 { |
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204 case VolumeProjection_Axial: |
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205 return depth_; |
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206 |
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207 case VolumeProjection_Coronal: |
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208 return height_; |
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209 |
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210 case VolumeProjection_Sagittal: |
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211 return width_; |
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212 |
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213 default: |
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214 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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215 } |
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216 } |
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217 |
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218 |
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219 Vector VolumeImageGeometry::GetCoordinates(float x, |
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220 float y, |
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221 float z) const |
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222 { |
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223 Vector p = LinearAlgebra::Product(transform_, LinearAlgebra::CreateVector(x, y, z, 1)); |
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224 |
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225 assert(LinearAlgebra::IsNear(p[3], 1)); // Affine transform, no perspective effect |
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226 |
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227 // Back to non-homogeneous coordinates |
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228 return LinearAlgebra::CreateVector(p[0], p[1], p[2]); |
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229 } |
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230 |
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231 |
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232 bool VolumeImageGeometry::DetectProjection(VolumeProjection& projection, |
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233 bool& isOpposite, |
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234 const Vector& planeNormal) const |
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235 { |
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236 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, planeNormal, axialGeometry_.GetNormal())) |
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237 { |
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238 projection = VolumeProjection_Axial; |
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239 return true; |
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240 } |
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241 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, planeNormal, coronalGeometry_.GetNormal())) |
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242 { |
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243 projection = VolumeProjection_Coronal; |
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244 return true; |
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245 } |
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246 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, planeNormal, sagittalGeometry_.GetNormal())) |
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247 { |
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248 projection = VolumeProjection_Sagittal; |
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249 return true; |
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250 } |
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251 else |
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252 { |
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253 return false; |
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254 } |
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255 } |
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256 |
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257 |
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258 bool VolumeImageGeometry::DetectSlice(VolumeProjection& projection, |
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259 unsigned int& slice, |
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260 const CoordinateSystem3D& plane) const |
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261 { |
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262 bool isOpposite; |
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263 if (!DetectProjection(projection, isOpposite, plane.GetNormal())) |
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264 { |
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265 return false; |
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266 } |
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267 |
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268 // Transforms the coordinates of the origin of the plane, into the |
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269 // coordinates of the axial geometry |
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270 const Vector& origin = plane.GetOrigin(); |
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271 Vector p = LinearAlgebra::Product( |
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272 transformInverse_, |
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273 LinearAlgebra::CreateVector(origin[0], origin[1], origin[2], 1)); |
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274 |
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275 assert(LinearAlgebra::IsNear(p[3], 1)); |
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276 |
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277 double z; |
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278 |
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279 switch (projection) |
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280 { |
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281 case VolumeProjection_Axial: |
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282 z = p[2]; |
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283 break; |
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284 |
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285 case VolumeProjection_Coronal: |
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286 z = p[1]; |
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287 break; |
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288 |
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289 case VolumeProjection_Sagittal: |
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290 z = p[0]; |
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291 break; |
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292 |
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293 default: |
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294 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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295 } |
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296 |
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297 const unsigned int projectionDepth = GetProjectionDepth(projection); |
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298 |
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299 z *= static_cast<double>(projectionDepth); |
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300 if (z < 0) |
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301 { |
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302 return false; |
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303 } |
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304 else |
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305 { |
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306 unsigned int d = static_cast<unsigned int>(std::floor(z)); |
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307 if (d >= projectionDepth) |
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308 { |
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309 return false; |
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310 } |
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311 else |
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312 { |
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313 slice = d; |
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314 return true; |
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315 } |
689
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316 } |
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317 } |
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318 |
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319 |
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320 CoordinateSystem3D VolumeImageGeometry::GetProjectionSlice(VolumeProjection projection, |
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321 unsigned int z) const |
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322 { |
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323 if (z >= GetProjectionDepth(projection)) |
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324 { |
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325 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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326 } |
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327 |
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328 Vector dim = GetVoxelDimensions(projection); |
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329 CoordinateSystem3D plane = GetProjectionGeometry(projection); |
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330 |
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331 Vector normal = plane.GetNormal(); |
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332 if (projection == VolumeProjection_Sagittal) |
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333 { |
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334 /** |
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335 * WARNING: In sagittal geometry, the normal points to REDUCING |
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336 * X-axis in the 3D world. This is necessary to keep the |
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337 * right-hand coordinate system. Hence the negation. |
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338 **/ |
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339 normal = -normal; |
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340 } |
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341 |
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342 plane.SetOrigin(plane.GetOrigin() + static_cast<double>(z) * dim[2] * normal); |
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343 |
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344 return plane; |
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345 } |
949
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OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
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346 |
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347 std::ostream& operator<<(std::ostream& s, const VolumeImageGeometry& v) |
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348 { |
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349 s << "width: " << v.width_ << " height: " << v.height_ |
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350 << " depth: " << v.depth_ |
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351 << " axialGeometry: " << v.axialGeometry_ |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
352 << " coronalGeometry: " << v.coronalGeometry_ |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
353 << " sagittalGeometry: " << v.sagittalGeometry_ |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
354 << " voxelDimensions_: " << v.voxelDimensions_ |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
355 << " height: " << v.height_ |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
356 << " transform: " << v.transform_ |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
357 << " transformInverse: " << v.transformInverse_; |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
358 return s; |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
359 } |
32eaf4929b08
OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents:
811
diff
changeset
|
360 |
684
7719eb852dd5
new class: VolumeImageGeometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
361 } |