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annotate OrthancStone/Resources/Graveyard/RTStructTentativeReimplementation-BGO/DicomStructurePolygon2.cpp @ 1908:affde38b84de

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moved tentative bgo reimplementation of rt-struct into graveyard
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 01 Feb 2022 08:38:32 +0100
parents OrthancStone/Sources/Toolbox/DicomStructurePolygon2.cpp@14c8f339d480
children 07964689cb0b
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
1871
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23 #ifdef BGO_ENABLE_DICOMSTRUCTURESETLOADER2
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24
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25 #include "DicomStructurePolygon2.h"
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26
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27 #include "../Toolbox/LinearAlgebra.h"
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28
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29 #include <Logging.h>
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30
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31 namespace OrthancStone
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32 {
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33 void DicomStructurePolygon2::ComputeDependentProperties()
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34 {
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35 ORTHANC_ASSERT(state_ == Building);
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36
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37 for (size_t j = 0; j < points_.size(); ++j)
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38 {
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39 // TODO: move to AddPoint!
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40 const Vector& p = points_[j];
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41 if (p[0] < minX_)
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42 minX_ = p[0];
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43 if (p[0] > maxX_)
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44 maxX_ = p[0];
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45
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46 if (p[1] < minY_)
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47 minY_ = p[1];
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48 if (p[1] > maxY_)
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49 maxY_ = p[1];
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50
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51 if (p[2] < minZ_)
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52 minZ_ = p[2];
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53 if (p[2] > maxZ_)
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54 maxZ_ = p[2];
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55 }
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56
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57 if (LinearAlgebra::IsNear(minX_, maxX_))
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58 {
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59 LinearAlgebra::AssignVector(normal_, 1, 0, 0);
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60 //ORTHANC_ASSERT(!LinearAlgebra::IsNear(minX, maxX));
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61 ORTHANC_ASSERT(!LinearAlgebra::IsNear(minY_, maxY_));
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62 ORTHANC_ASSERT(!LinearAlgebra::IsNear(minZ_, maxZ_));
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63 }
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64 else if (LinearAlgebra::IsNear(minY_, maxY_))
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65 {
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66 LinearAlgebra::AssignVector(normal_, 0, 1, 0);
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67 ORTHANC_ASSERT(!LinearAlgebra::IsNear(minX_, maxX_));
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68 ORTHANC_ASSERT(!LinearAlgebra::IsNear(minZ_, maxZ_));
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69 }
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70 else if (LinearAlgebra::IsNear(minZ_, maxZ_))
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71 {
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72 LinearAlgebra::AssignVector(normal_, 0, 0, 1);
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73 ORTHANC_ASSERT(!LinearAlgebra::IsNear(minX_, maxX_));
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74 ORTHANC_ASSERT(!LinearAlgebra::IsNear(minY_, maxY_));
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75 }
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76 else
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77 {
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78 LOG(ERROR) << "The contour is not coplanar and not parallel to any axis.";
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79 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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80 }
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81 state_ = Valid;
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82 }
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83
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84
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85 void DicomStructurePolygon2::ProjectOnConstantPlane(
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86 std::vector<ScenePoint2D>& intersections, const CoordinateSystem3D& plane) const
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87 {
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88 // the plane can either have constant X, or constant Y.
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89 // - for constant Z planes, use the ProjectOnParallelPlane method
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90 // - other type of planes are not supported
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91
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92 // V is the coordinate that is constant in the plane
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93 double planeV = 0.0;
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94
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95 // if true, then "u" in the code is "x" and "v" is "y".
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96 // (v is constant in the plane)
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97 bool uvxy = false;
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98
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99 size_t uindex = static_cast<size_t>(-1);
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100 size_t vindex = static_cast<size_t>(-1);
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101
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102 ORTHANC_ASSERT(LinearAlgebra::IsNear(plane.GetNormal()[2], 0.0));
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103
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104 if (LinearAlgebra::IsNear(plane.GetNormal()[1], 0.0))
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105 {
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106 // normal is 1,0,0 (or -1,0,0).
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107 // plane is constant X
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108 uindex = 1;
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109 vindex = 0;
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110
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111 uvxy = false;
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112 planeV = plane.GetOrigin()[0];
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113 if (planeV < minX_)
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114 return;
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115 if (planeV > maxX_)
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116 return;
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117 }
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118 else if (LinearAlgebra::IsNear(plane.GetNormal()[0], 0.0))
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119 {
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120 // normal is 0,1,0 (or 0,-1,0).
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121 // plane is constant Y
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122 uindex = 0;
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123 vindex = 1;
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124
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125 uvxy = true;
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126 planeV = plane.GetOrigin()[1];
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127 if (planeV < minY_)
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128 return;
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129 if (planeV > maxY_)
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130 return;
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131 }
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132 else
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133 {
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134 // if the following assertion(s) fail(s), it means the plane is NOT a constant-X or constant-Y plane
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135 LOG(ERROR) << "Plane normal must be (a,0,0) or (0,a,0), with a == -1 or a == 1";
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136 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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137 }
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138
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139 size_t pointCount = GetPointCount();
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140 if (pointCount >= 3)
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141 {
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142 // this vector will contain the coordinates of the intersection points
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143 // between the plane and the polygon.
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144 // these are expressed in the U coordinate, that is either X or Y,
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145 // depending upon the plane orientation
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146 std::vector<double> uIntersections;
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147
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148 // we loop on the segments of the polygon (TODO: optimize)
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149 // and we compute the intersection between each segment and the cut
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150 // cutting plane (slice) has a constant X
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151
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152 for (size_t iPoint = 0; iPoint < pointCount; ++iPoint)
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153 {
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154 double u1 = points_[iPoint][uindex];
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155 double v1 = points_[iPoint][vindex];
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156
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157 double u2 = 0;
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158 double v2 = 0;
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159
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160 if (iPoint < pointCount - 1)
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161 {
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162 u2 = points_[iPoint + 1][uindex];
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163 v2 = points_[iPoint + 1][vindex];
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164 }
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165 else
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166 {
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167 u2 = points_[0][uindex];
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168 v2 = points_[0][vindex];
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169 }
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170
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171 // Check if the segment intersects the plane
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172 if ((std::min(v1, v2) <= planeV) && (std::max(v1, v2) >= planeV))
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173 {
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174 // special case: the segment is parallel to the plane but close to it
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175 if (LinearAlgebra::IsNear(v1, v2))
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176 {
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177 // in that case, we choose to label both points as an intersection
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178 double x, y;
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179 plane.ProjectPoint(x, y, points_[iPoint]);
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180 intersections.push_back(ScenePoint2D(x, y));
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181
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182 plane.ProjectPoint(x, y, points_[iPoint + 1]);
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183 intersections.push_back(ScenePoint2D(x, y));
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184 }
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185 else
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186 {
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187 // we are looking for u so that (u,planeV) belongs to the segment
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188 // let's define alpha = (u-u2)/(u1-u2) --> u = alpha*(u1-u2) + u2
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189 // alpha = (v2-planeV)/(v2-v1)
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190 // because the following two triangles are similar
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191 // [ (planeY,x) , (y2,x2), (planeY,x2) ] or
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192 // [ (planeX,y) , (x2,y2), (planeX,y2) ]
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193 // and
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194 // [ (y1 ,x1) , (y2,x2), (y1 ,x2) ] or
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195 // [ (x1 ,y1) , (x2,y2), (x1 ,y2) ]
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196
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197 /*
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198 void CoordinateSystem3D::ProjectPoint(double& offsetX,
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199 double& offsetY,
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200 const Vector& point) const
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201 */
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202 double alpha = (v2 - planeV) / (v2 - v1);
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203
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204 // get rid of numerical oddities
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205 if (alpha < 0.0)
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206 alpha = 0.0;
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207 if (alpha > 1.0)
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208 alpha = 1.0;
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209 double u = alpha * (u1 - u2) + u2;
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210
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211 // here is the intersection in world coordinates
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212 Vector intersection;
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213 if(uvxy)
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214 LinearAlgebra::AssignVector(intersection, u, planeV, minZ_);
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215 else
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216 LinearAlgebra::AssignVector(intersection, planeV, u, minZ_);
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217
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218 // and we convert it to plane coordinates
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219 {
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220 double xi, yi;
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221 plane.ProjectPoint(xi, yi, intersection);
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222
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223 // we consider that the x axis is always parallel to the polygons
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224 // TODO: is this hypothesis safe??????
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225 uIntersections.insert(std::lower_bound(uIntersections.begin(), uIntersections.end(), xi), xi);
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226 }
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227 }
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228 }
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229 } // end of for (size_t iPoint = 0; iPoint < pointCount; ++iPoint)
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230
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231 // now we convert the intersections to plane points
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232 // we consider that the x axis is always parallel to the polygons
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233 // TODO: same hypothesis as above: plane is perpendicular to polygons,
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234 // plane is parallel to the XZ (constant Y) or YZ (constant X) 3D planes
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235 for (size_t i = 0; i < uIntersections.size(); ++i)
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236 {
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237 double x = uIntersections[i];
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238 intersections.push_back(ScenePoint2D(x, minZ_));
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239 }
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240 } // end of if (pointCount >= 3)
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241 else
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242 {
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243 LOG(ERROR) << "This polygon has " << pointCount << " vertices, which is less than 3 --> skipping";
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244 }
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245 }
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246
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247 void DicomStructurePolygon2::ProjectOnParallelPlane(
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248 std::vector< std::pair<ScenePoint2D, ScenePoint2D> >& segments,
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249 const CoordinateSystem3D& plane) const
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250 {
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251 if (points_.size() < 3)
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252 return;
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253
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254 // the plane is horizontal
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255 ORTHANC_ASSERT(LinearAlgebra::IsNear(plane.GetNormal()[0], 0.0));
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256 ORTHANC_ASSERT(LinearAlgebra::IsNear(plane.GetNormal()[1], 0.0));
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257
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258 segments.clear();
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259 segments.reserve(points_.size());
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260 // since the returned values need to be expressed in the supplied coordinate
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261 // system, we need to subtract origin_ from the returned points
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262
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263 double planeOriginX = plane.GetOrigin()[0];
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264 double planeOriginY = plane.GetOrigin()[1];
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265
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266 // precondition: points_.size() >= 3
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267 for (size_t j = 0; j < points_.size()-1; ++j)
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268 {
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269 // segment between point j and j+1
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270
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271 const Vector& point0 = GetPoint(j);
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272 // subtract plane origin x and y
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273 ScenePoint2D p0(point0[0] - planeOriginX, point0[1] - planeOriginY);
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274
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275 const Vector& point1 = GetPoint(j+1);
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276 // subtract plane origin x and y
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277 ScenePoint2D p1(point1[0] - planeOriginX, point1[1] - planeOriginY);
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278
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279 segments.push_back(std::pair<ScenePoint2D, ScenePoint2D>(p0,p1));
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280 }
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281
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282
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283 // final segment
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284
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285 const Vector& point0 = GetPoint(points_.size() - 1);
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286 // subtract plane origin x and y
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287 ScenePoint2D p0(point0[0] - planeOriginX, point0[1] - planeOriginY);
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288
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289 const Vector& point1 = GetPoint(0);
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290 // subtract plane origin x and y
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291 ScenePoint2D p1(point1[0] - planeOriginX, point1[1] - planeOriginY);
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292
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293 segments.push_back(std::pair<ScenePoint2D, ScenePoint2D>(p0, p1));
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294 }
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295
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296 double DicomStructurePolygon2::GetZ() const
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297 {
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298 ORTHANC_ASSERT(LinearAlgebra::IsNear(normal_[0], 0.0));
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299 ORTHANC_ASSERT(LinearAlgebra::IsNear(normal_[1], 0.0));
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300 ORTHANC_ASSERT(LinearAlgebra::IsNear(minZ_, maxZ_));
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301 return minZ_;
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302 }
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303 }
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304
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305 #endif
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306 // BGO_ENABLE_DICOMSTRUCTURESETLOADER2
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307