Mercurial > hg > orthanc-stone
annotate OrthancStone/UnitTestsSources/Graveyard/TestStructureSet_BGO.cpp @ 1541:ae17c8c8838f
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 11 Aug 2020 13:47:24 +0200 |
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1541
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1 /* |
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2 these tests are single-threaded... no worries for old buggy compilers |
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3 (I'm talking to YOU, cl.exe v100! And to your ancestors!) |
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4 */ |
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5 static std::string& GetTestJson() |
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6 { |
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7 static const char* resultRaw = NULL; |
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8 static std::string result; |
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9 if (resultRaw == NULL) |
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10 { |
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11 std::stringstream sst; |
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12 |
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13 sst << k_rtStruct_json00 |
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14 << k_rtStruct_json01 |
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15 << k_rtStruct_json02 |
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16 << k_rtStruct_json03 |
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17 << k_rtStruct_json04 |
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18 << k_rtStruct_json05 |
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19 << k_rtStruct_json06 |
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20 << k_rtStruct_json07 |
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21 << k_rtStruct_json08; |
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22 |
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23 std::string wholeBody = sst.str(); |
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24 result.swap(wholeBody); |
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25 resultRaw = result.c_str(); |
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26 } |
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27 return result; |
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28 } |
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29 |
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30 |
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31 namespace |
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32 { |
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33 void Initialize(const char* orthancApiUrl, OrthancStone::ILoadersContext& loadersContext) |
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34 { |
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35 Orthanc::WebServiceParameters p; |
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36 |
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37 OrthancStone::GenericLoadersContext& typedLoadersContext = |
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38 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext); |
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39 // Default is http://localhost:8042 |
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40 // Here's how you may change it |
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41 p.SetUrl(orthancApiUrl); |
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42 p.SetCredentials("orthanc", "orthanc"); |
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43 typedLoadersContext.SetOrthancParameters(p); |
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44 |
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45 typedLoadersContext.StartOracle(); |
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46 } |
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47 |
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48 void Exitialize(OrthancStone::ILoadersContext& loadersContext) |
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49 { |
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50 OrthancStone::GenericLoadersContext& typedLoadersContext = |
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51 dynamic_cast<OrthancStone::GenericLoadersContext&>(loadersContext); |
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52 |
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53 typedLoadersContext.StopOracle(); |
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54 } |
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55 |
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56 |
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57 #if 0 |
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58 class TestObserver : public ObserverBase<TestObserver> |
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59 { |
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60 public: |
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61 TestObserver() {}; |
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62 |
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63 virtual void Handle |
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64 |
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65 }; |
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66 #endif |
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67 |
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68 } |
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69 |
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70 TEST(StructureSet, DISABLED_StructureSetLoader_injection_feature_2020_05_10) |
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71 { |
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72 namespace pt = boost::posix_time; |
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73 |
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74 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1)); |
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75 Initialize("http://localhost:8042/", *loadersContext); |
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76 |
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77 boost::shared_ptr<DicomStructureSetLoader> loader = DicomStructureSetLoader::Create(*loadersContext); |
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78 |
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79 // replace with Orthanc ID of an uploaded RTSTRUCT instance! |
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80 loader->LoadInstanceFullVisibility("72c773ac-5059f2c4-2e6a9120-4fd4bca1-45701661"); |
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81 |
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82 bool bContinue(true); |
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83 |
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84 pt::ptime initialTime = pt::second_clock::local_time(); |
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85 |
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86 while (bContinue) |
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87 { |
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88 bContinue = !loader->AreStructuresReady(); |
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89 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000)); |
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90 |
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91 { |
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92 pt::ptime nowTime = pt::second_clock::local_time(); |
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93 pt::time_duration diff = nowTime - initialTime; |
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94 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001; |
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95 std::cout << seconds << " seconds elapsed...\n"; |
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96 if (seconds > 30) |
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97 { |
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98 std::cout << "More than 30 seconds elapsed... Aborting test :(\n"; |
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99 //GTEST_FATAL_FAILURE_("More than 30 seconds elapsed... Aborting test :("); |
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100 //bContinue = false; |
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101 } |
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102 } |
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103 } |
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104 } |
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105 |
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106 class SliceProcessor : |
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107 public OrthancStone::OrthancSeriesVolumeProgressiveLoader::ISlicePostProcessor, |
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108 public OrthancStone::DicomStructureSetLoader::IInstanceLookupHandler |
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109 { |
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110 public: |
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111 SliceProcessor(OrthancStone::DicomStructureSetLoader& structLoader) : structLoader_(structLoader) |
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112 { |
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113 } |
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114 |
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115 virtual void ProcessCTDicomSlice(const Orthanc::DicomMap& instance) ORTHANC_OVERRIDE |
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116 { |
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117 std::string sopInstanceUid; |
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118 if (!instance.LookupStringValue(sopInstanceUid, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false)) |
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119 { |
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120 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Missing SOPInstanceUID in a DICOM instance"); |
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121 } |
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122 slicesDicom_[sopInstanceUid] = boost::shared_ptr<DicomMap>(instance.Clone()); |
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123 } |
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124 |
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125 virtual void RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances) ORTHANC_OVERRIDE |
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126 { |
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127 for (std::set<std::string>::const_iterator it = nonEmptyInstances.begin(); |
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128 it != nonEmptyInstances.end(); |
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129 ++it) |
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130 { |
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131 const std::string nonEmptyInstance = *it; |
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132 if (slicesDicom_.find(nonEmptyInstance) == slicesDicom_.end()) |
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133 { |
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134 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Referenced SOPInstanceUID not found in CT"); |
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135 } |
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136 boost::shared_ptr<Orthanc::DicomMap> instance = slicesDicom_[nonEmptyInstance]; |
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137 structLoader_.AddReferencedSlice(*instance); |
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138 } |
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139 } |
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140 |
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141 OrthancStone::DicomStructureSetLoader& structLoader_; |
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142 std::map<std::string, boost::shared_ptr<Orthanc::DicomMap> > slicesDicom_; |
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143 }; |
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144 |
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145 void LoadCtSeriesBlocking(boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader, std::string seriesId) |
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146 { |
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147 namespace pt = boost::posix_time; |
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148 |
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149 // Load the CT |
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150 ctLoader->LoadSeries(seriesId); |
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151 |
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152 // Wait for CT to be loaded |
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153 pt::ptime initialTime = pt::second_clock::local_time(); |
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154 { |
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155 bool bContinue(true); |
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156 while (bContinue) |
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157 { |
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158 bContinue = !ctLoader->IsVolumeImageReadyInHighQuality(); |
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159 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000)); |
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160 |
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161 { |
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162 pt::ptime nowTime = pt::second_clock::local_time(); |
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163 pt::time_duration diff = nowTime - initialTime; |
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164 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001; |
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165 std::cout << seconds << " seconds elapsed...\n"; |
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166 if (seconds > 30) |
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167 { |
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168 const char* msg = "More than 30 seconds elapsed when waiting for CT... Aborting test :(\n"; |
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169 GTEST_FATAL_FAILURE_(msg); |
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170 bContinue = false; |
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171 } |
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172 } |
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173 } |
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174 } |
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175 } |
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176 |
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177 |
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178 /** |
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179 Will fill planes |
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180 */ |
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181 void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes, |
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182 OrthancStone::VolumeProjection projection, |
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183 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader) |
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184 { |
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185 planes.clear(); // inefficient : we don't care |
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186 |
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187 const VolumeImageGeometry& geometry = ctLoader->GetImageGeometry(); |
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188 const unsigned int depth = geometry.GetProjectionDepth(projection); |
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189 |
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190 planes.resize(depth); |
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191 |
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192 for (unsigned int z = 0; z < depth; z++) |
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193 { |
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194 planes[z] = geometry.GetProjectionSlice(projection, z); |
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195 } |
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196 } |
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197 |
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198 void LoadRtStructBlocking(boost::shared_ptr<OrthancStone::DicomStructureSetLoader> structLoader, std::string instanceId) |
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199 { |
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200 namespace pt = boost::posix_time; |
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201 |
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202 // Load RTSTRUCT |
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203 structLoader->LoadInstanceFullVisibility(instanceId); |
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204 |
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205 pt::ptime initialTime = pt::second_clock::local_time(); |
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206 |
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207 // Wait for the loading process to complete |
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208 { |
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209 bool bContinue(true); |
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210 while (bContinue) |
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211 { |
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212 bContinue = !structLoader->AreStructuresReady(); |
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213 boost::this_thread::sleep_for(boost::chrono::milliseconds(1000)); |
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214 |
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215 { |
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216 pt::ptime nowTime = pt::second_clock::local_time(); |
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217 pt::time_duration diff = nowTime - initialTime; |
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218 double seconds = static_cast<double>(diff.total_milliseconds()) * 0.001; |
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219 std::cout << seconds << " seconds elapsed...\n"; |
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220 if (seconds > 30) |
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221 { |
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222 const char* msg = "More than 30 seconds elapsed when waiting for RTSTRUCT... Aborting test :(\n"; |
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223 GTEST_FATAL_FAILURE_(msg); |
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224 bContinue = false; |
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225 } |
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226 } |
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227 } |
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228 } |
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229 } |
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230 |
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231 TEST(StructureSet, DISABLED_Integration_Compound_CT_Struct_Loading) |
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232 { |
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233 const double TOLERANCE = 0.0000001; |
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234 |
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235 // create loaders context |
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236 std::unique_ptr<OrthancStone::ILoadersContext> loadersContext(new OrthancStone::GenericLoadersContext(1,4,1)); |
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237 Initialize("http://localhost:8042/", *loadersContext); |
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238 |
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239 const char* ctSeriesId = "a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa"; |
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240 const char* rtStructInstanceId = "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9"; |
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241 |
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242 // we'll compare normal loading and optimized loading with SliceProcessor to store the dicom |
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243 |
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244 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> normalStructLoader; |
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245 boost::shared_ptr<OrthancStone::DicomStructureSetLoader> optimizedStructLoader; |
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246 |
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247 { |
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248 // Create the CT volume |
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249 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>(); |
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250 |
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251 // Create CT loader |
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252 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader = |
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253 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume); |
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254 |
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255 // Create struct loader |
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256 normalStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext); |
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257 |
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258 // Load the CT |
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259 LoadCtSeriesBlocking(ctLoader, ctSeriesId); |
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260 |
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261 const OrthancStone::VolumeImageGeometry& imageGeometry = ctLoader->GetImageGeometry(); |
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262 unsigned int width = imageGeometry.GetWidth(); |
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263 EXPECT_EQ(512u, width); |
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264 unsigned int height = imageGeometry.GetHeight(); |
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265 EXPECT_EQ(512u, height); |
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266 unsigned int depth = imageGeometry.GetDepth(); |
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267 EXPECT_EQ(109u, depth); |
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268 |
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269 // Load the RTStruct |
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270 LoadRtStructBlocking(normalStructLoader, rtStructInstanceId); |
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271 } |
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272 |
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273 std::vector<OrthancStone::CoordinateSystem3D> axialPlanes; |
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274 std::vector<OrthancStone::CoordinateSystem3D> coronalPlanes; |
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275 std::vector<OrthancStone::CoordinateSystem3D> sagittalPlanes; |
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276 |
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277 { |
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278 // Create the CT volume |
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279 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume = boost::make_shared<OrthancStone::DicomVolumeImage>(); |
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280 |
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281 // Create CT loader |
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282 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader = |
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283 OrthancStone::OrthancSeriesVolumeProgressiveLoader::Create(*loadersContext, volume); |
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284 |
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285 // Create struct loader |
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286 optimizedStructLoader = OrthancStone::DicomStructureSetLoader::Create(*loadersContext); |
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287 |
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288 // create the slice processor / instance lookup |
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289 boost::shared_ptr<SliceProcessor> sliceProcessor(new SliceProcessor(*optimizedStructLoader)); |
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290 |
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291 // Inject it into CT loader |
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292 ctLoader->SetDicomSlicePostProcessor(sliceProcessor); |
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293 |
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294 // Inject it into RTSTRUCT loader |
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295 optimizedStructLoader->SetInstanceLookupHandler(sliceProcessor); |
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296 |
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297 // Load the CT |
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298 LoadCtSeriesBlocking(ctLoader, ctSeriesId); |
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299 |
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300 // now, the slices are collected. let's do some checks |
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301 EXPECT_EQ(109u, sliceProcessor->slicesDicom_.size()); |
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302 |
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303 // Load the RTStruct |
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304 LoadRtStructBlocking(optimizedStructLoader, rtStructInstanceId); |
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305 |
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306 GetCTPlanes(axialPlanes, VolumeProjection_Axial, ctLoader); |
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307 GetCTPlanes(coronalPlanes, VolumeProjection_Coronal, ctLoader); |
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308 GetCTPlanes(sagittalPlanes, VolumeProjection_Sagittal, ctLoader); |
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309 } |
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310 |
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311 // DO NOT DELETE THOSE! |
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312 OrthancStone::DicomStructureSet* normalContent = normalStructLoader->GetContent(); |
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313 OrthancStone::DicomStructureSet* optimizedContent = optimizedStructLoader->GetContent(); |
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314 |
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315 EXPECT_EQ(normalContent->GetStructuresCount(), optimizedContent->GetStructuresCount()); |
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316 |
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317 /*void GetCTPlanes(std::vector<OrthancStone::CoordinateSystem3D>& planes, |
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318 OrthancStone::VolumeProjection projection, |
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319 boost::shared_ptr<OrthancStone::OrthancSeriesVolumeProgressiveLoader> ctLoader)*/ |
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320 |
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321 |
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322 std::vector<OrthancStone::CoordinateSystem3D> allPlanes; |
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323 |
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324 // let's gather all the possible cutting planes in a single struct |
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325 for (size_t i = 0; i < axialPlanes.size(); ++i) |
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326 allPlanes.push_back(axialPlanes[i]); |
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327 |
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328 for (size_t i = 0; i < coronalPlanes.size(); ++i) |
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329 allPlanes.push_back(coronalPlanes[i]); |
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330 |
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331 for (size_t i = 0; i < sagittalPlanes.size(); ++i) |
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332 allPlanes.push_back(sagittalPlanes[i]); |
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333 |
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334 for (size_t i = 0; i < normalContent->GetStructuresCount(); ++i) |
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335 { |
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336 std::cout << "Testing structure (" << i << "/" << normalContent->GetStructuresCount() << ")\n"; |
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337 Vector structureCenter1 = normalContent->GetStructureCenter(i); |
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338 const std::string& structureName1 = normalContent->GetStructureName(i); |
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339 const std::string& structureInterpretation1 = normalContent->GetStructureInterpretation(i); |
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340 Color structureColor1 = normalContent->GetStructureColor(i); |
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341 |
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342 Vector structureCenter2 = optimizedContent->GetStructureCenter(i); |
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343 const std::string& structureName2 = optimizedContent->GetStructureName(i); |
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344 const std::string& structureInterpretation2 = optimizedContent->GetStructureInterpretation(i); |
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345 Color structureColor2 = optimizedContent->GetStructureColor(i); |
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346 |
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347 EXPECT_NEAR(structureCenter1[0], structureCenter2[0], TOLERANCE); |
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348 EXPECT_NEAR(structureCenter1[1], structureCenter2[1], TOLERANCE); |
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349 EXPECT_NEAR(structureCenter1[2], structureCenter2[2], TOLERANCE); |
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350 |
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351 EXPECT_EQ(structureName1, structureName2); |
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352 EXPECT_EQ(structureInterpretation1, structureInterpretation2); |
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353 EXPECT_EQ(structureColor1.GetRed(), structureColor2.GetRed()); |
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354 EXPECT_EQ(structureColor1.GetGreen(), structureColor2.GetGreen()); |
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355 EXPECT_EQ(structureColor1.GetBlue(), structureColor2.GetBlue()); |
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356 |
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357 // "random" walk through the planes. Processing them all takes too long (~ 1 min) |
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358 for (size_t j = 0; j < allPlanes.size(); j += 37) |
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359 { |
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360 const OrthancStone::CoordinateSystem3D& plane = allPlanes[j]; |
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361 |
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362 std::vector< std::pair<Point2D, Point2D> > segments1; |
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363 std::vector< std::pair<Point2D, Point2D> > segments2; |
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364 |
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365 bool ok1 = normalContent->ProjectStructure(segments1, i, plane); |
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366 bool ok2 = optimizedContent->ProjectStructure(segments2, i, plane); |
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367 |
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368 // checks here |
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369 EXPECT_EQ(ok1, ok2); |
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370 EXPECT_EQ(segments1.size(), segments2.size()); |
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371 |
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372 for (size_t k = 0; k < segments1.size(); ++k) |
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373 { |
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374 EXPECT_NEAR(segments1[k].first.x, segments2[k].first.x, TOLERANCE); |
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375 EXPECT_NEAR(segments1[k].first.y, segments2[k].first.y, TOLERANCE); |
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376 EXPECT_NEAR(segments1[k].second.x, segments2[k].second.x, TOLERANCE); |
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377 EXPECT_NEAR(segments1[k].second.y, segments2[k].second.y, TOLERANCE); |
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378 } |
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379 } |
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380 } |
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381 |
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382 Exitialize(*loadersContext); |
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383 } |