Mercurial > hg > orthanc-stone
annotate RenderingPlugin/Sources/Plugin.cpp @ 1888:9bdce2c91620
start rendering rt-struct
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 17 Jan 2022 21:20:56 +0100 |
parents | aa4ed1cf4e8d |
children | fe4befc9c2b0 |
rev | line source |
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1 /** |
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2 * Stone of Orthanc |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU General Public License |
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "OrthancPluginConnection.h" |
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24 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" |
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25 |
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26 #include "../../OrthancStone/Sources/Toolbox/AffineTransform2D.h" |
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27 #include "../../OrthancStone/Sources/Toolbox/DicomInstanceParameters.h" |
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28 #include "../../OrthancStone/Sources/Toolbox/DicomStructureSet.h" |
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29 |
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30 #include <EmbeddedResources.h> |
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31 |
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32 #include <Images/Image.h> |
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33 #include <Images/ImageProcessing.h> |
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34 #include <Images/NumpyWriter.h> |
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35 #include <Logging.h> |
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36 #include <SerializationToolbox.h> |
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37 #include <Toolbox.h> |
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38 |
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39 #include <boost/math/constants/constants.hpp> |
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40 |
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41 |
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42 class DicomStructureCache : public boost::noncopyable |
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43 { |
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44 private: |
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45 boost::mutex mutex_; |
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46 std::string instanceId_; |
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47 std::unique_ptr<OrthancStone::DicomStructureSet> rtstruct_; |
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48 |
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49 DicomStructureCache() // Singleton design pattern |
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50 { |
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51 } |
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52 |
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53 public: |
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54 void Invalidate(const std::string& instanceId) |
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55 { |
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56 boost::mutex::scoped_lock lock(mutex_); |
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57 |
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58 if (instanceId_ == instanceId) |
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59 { |
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60 rtstruct_.reset(NULL); |
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61 } |
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62 } |
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63 |
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64 static DicomStructureCache& GetSingleton() |
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65 { |
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66 static DicomStructureCache instance; |
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67 return instance; |
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68 } |
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69 |
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70 class Accessor : public boost::noncopyable |
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71 { |
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72 private: |
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73 boost::mutex::scoped_lock lock_; |
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74 std::string instanceId_; |
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75 const OrthancStone::DicomStructureSet* rtstruct_; |
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76 |
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77 public: |
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78 Accessor(DicomStructureCache& that, |
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79 const std::string& instanceId) : |
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80 lock_(that.mutex_), |
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81 instanceId_(instanceId), |
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82 rtstruct_(NULL) |
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83 { |
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84 if (that.instanceId_ == instanceId && |
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85 that.rtstruct_.get() != NULL) |
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86 { |
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87 rtstruct_ = that.rtstruct_.get(); |
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88 } |
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89 else |
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90 { |
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91 try |
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92 { |
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93 OrthancStone::OrthancPluginConnection connection; |
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94 OrthancStone::FullOrthancDataset dataset(connection, "/instances/" + instanceId + "/tags?ignore-length=3006-0050"); |
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95 that.rtstruct_.reset(new OrthancStone::DicomStructureSet(dataset)); |
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96 that.instanceId_ = instanceId; |
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97 rtstruct_ = that.rtstruct_.get(); |
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98 } |
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99 catch (Orthanc::OrthancException&) |
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100 { |
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101 } |
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102 } |
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103 } |
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104 |
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105 const std::string& GetInstanceId() const |
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106 { |
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107 return instanceId_; |
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108 } |
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109 |
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110 bool IsValid() const |
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111 { |
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112 return rtstruct_ != NULL; |
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113 } |
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114 |
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115 const OrthancStone::DicomStructureSet& GetRtStruct() const |
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116 { |
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117 if (IsValid()) |
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118 { |
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119 return *rtstruct_; |
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120 } |
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121 else |
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122 { |
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123 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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124 } |
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125 } |
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126 }; |
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127 }; |
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128 |
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129 |
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130 static Orthanc::PixelFormat Convert(OrthancPluginPixelFormat format) |
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131 { |
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132 switch (format) |
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133 { |
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134 case OrthancPluginPixelFormat_RGB24: |
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135 return Orthanc::PixelFormat_RGB24; |
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136 |
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137 case OrthancPluginPixelFormat_Grayscale8: |
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138 return Orthanc::PixelFormat_Grayscale8; |
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139 |
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140 case OrthancPluginPixelFormat_Grayscale16: |
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141 return Orthanc::PixelFormat_Grayscale16; |
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142 |
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143 case OrthancPluginPixelFormat_SignedGrayscale16: |
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144 return Orthanc::PixelFormat_SignedGrayscale16; |
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145 |
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146 default: |
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147 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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148 } |
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149 } |
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150 |
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151 |
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152 static bool ParseBoolean(const std::string& key, |
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153 const std::string& value) |
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154 { |
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155 bool result; |
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156 |
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157 if (Orthanc::SerializationToolbox::ParseBoolean(result, value)) |
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158 { |
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159 return result; |
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160 } |
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161 else |
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162 { |
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163 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, |
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164 "Bad value for " + key + ": " + value); |
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165 } |
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166 } |
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167 |
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168 |
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169 static double ParseDouble(const std::string& key, |
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170 const std::string& value) |
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171 { |
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172 double result; |
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173 |
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174 if (Orthanc::SerializationToolbox::ParseDouble(result, value)) |
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175 { |
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176 return result; |
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177 } |
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178 else |
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179 { |
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180 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, |
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181 "Bad value for " + key + ": " + value); |
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182 } |
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183 } |
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184 |
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185 |
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186 static unsigned int ParseUnsignedInteger(const std::string& key, |
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187 const std::string& value) |
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188 { |
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189 uint32_t result; |
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190 |
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191 if (Orthanc::SerializationToolbox::ParseUnsignedInteger32(result, value)) |
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192 { |
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193 return result; |
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194 } |
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195 else |
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196 { |
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197 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, |
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198 "Bad value for " + key + ": " + value); |
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199 } |
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200 } |
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201 |
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202 |
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203 |
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204 class DataAugmentationParameters : public boost::noncopyable |
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205 { |
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206 private: |
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207 double angleRadians_; |
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208 double scaling_; |
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209 double offsetX_; |
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210 double offsetY_; |
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211 bool flipX_; |
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212 bool flipY_; |
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213 bool hasResize_; |
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214 unsigned int targetWidth_; |
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215 unsigned int targetHeight_; |
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216 |
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217 void ApplyInternal(Orthanc::ImageAccessor& target, |
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218 const Orthanc::ImageAccessor& source) |
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219 { |
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220 if (source.GetWidth() == 0 || |
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221 source.GetHeight() == 0) |
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222 { |
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223 Orthanc::ImageProcessing::Set(target, 0); // Clear the image |
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224 } |
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225 else if (target.GetWidth() == 0 || |
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226 target.GetHeight() == 0) |
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227 { |
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228 // Nothing to do |
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229 } |
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230 else |
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231 { |
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232 OrthancStone::AffineTransform2D transform = ComputeTransform(source.GetWidth(), source.GetHeight()); |
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233 |
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234 OrthancStone::ImageInterpolation interpolation; |
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235 |
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236 if (source.GetFormat() == Orthanc::PixelFormat_RGB24) |
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237 { |
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238 LOG(WARNING) << "Bilinear interpolation for color images is not implemented yet"; |
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239 interpolation = OrthancStone::ImageInterpolation_Nearest; |
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240 } |
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241 else |
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242 { |
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243 interpolation = OrthancStone::ImageInterpolation_Bilinear; |
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244 } |
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245 |
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246 transform.Apply(target, source, interpolation, true /* clear */); |
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247 } |
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248 } |
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249 |
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250 |
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251 Orthanc::ImageAccessor* ApplyUnchecked(const Orthanc::ImageAccessor& source) |
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252 { |
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253 std::unique_ptr<Orthanc::ImageAccessor> target; |
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254 |
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255 if (hasResize_) |
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256 { |
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257 target.reset(new Orthanc::Image(source.GetFormat(), targetWidth_, targetHeight_, false)); |
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258 } |
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259 else |
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260 { |
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261 target.reset(new Orthanc::Image(source.GetFormat(), source.GetWidth(), source.GetHeight(), false)); |
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262 } |
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263 |
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264 ApplyInternal(*target, source); |
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265 return target.release(); |
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266 } |
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267 |
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268 |
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269 public: |
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270 DataAugmentationParameters() |
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271 { |
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272 Clear(); |
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273 } |
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274 |
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275 |
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276 void Clear() |
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277 { |
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278 angleRadians_ = 0; |
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279 scaling_ = 1; |
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280 offsetX_ = 0; |
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281 offsetY_ = 0; |
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282 flipX_ = false; |
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283 flipY_ = false; |
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284 hasResize_ = false; |
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285 targetWidth_ = 0; |
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286 targetHeight_ = 0; |
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287 } |
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288 |
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289 |
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290 OrthancStone::AffineTransform2D ComputeTransform(unsigned int sourceWidth, |
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291 unsigned int sourceHeight) const |
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292 { |
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293 unsigned int w = (hasResize_ ? targetWidth_ : sourceWidth); |
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294 unsigned int h = (hasResize_ ? targetHeight_ : sourceHeight); |
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295 |
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296 if (w == 0 || |
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297 h == 0 || |
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298 sourceWidth == 0 || |
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299 sourceHeight == 0) |
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300 { |
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301 // Division by zero |
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302 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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303 } |
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304 |
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305 double r = std::min(static_cast<double>(w) / static_cast<double>(sourceWidth), |
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306 static_cast<double>(h) / static_cast<double>(sourceHeight)); |
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307 |
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308 OrthancStone::AffineTransform2D resize = OrthancStone::AffineTransform2D::Combine( |
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309 OrthancStone::AffineTransform2D::CreateOffset(static_cast<double>(w) / 2.0, |
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310 static_cast<double>(h) / 2.0), |
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311 OrthancStone::AffineTransform2D::CreateScaling(r, r)); |
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312 |
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313 OrthancStone::AffineTransform2D dataAugmentation = OrthancStone::AffineTransform2D::Combine( |
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314 OrthancStone::AffineTransform2D::CreateScaling(scaling_, scaling_), |
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315 OrthancStone::AffineTransform2D::CreateOffset(offsetX_, offsetY_), |
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316 OrthancStone::AffineTransform2D::CreateRotation(angleRadians_), |
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317 OrthancStone::AffineTransform2D::CreateOffset(-static_cast<double>(sourceWidth) / 2.0, |
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318 -static_cast<double>(sourceHeight) / 2.0), |
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319 OrthancStone::AffineTransform2D::CreateFlip(flipX_, flipY_, sourceWidth, sourceHeight)); |
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320 |
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321 return OrthancStone::AffineTransform2D::Combine(resize, dataAugmentation); |
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322 } |
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323 |
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324 |
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325 bool ParseParameter(const std::string& key, |
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326 const std::string& value) |
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327 { |
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328 if (key == "angle") |
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329 { |
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330 double angle = ParseDouble(key, value); |
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331 angleRadians_ = angle / 180.0 * boost::math::constants::pi<double>(); |
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332 return true; |
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333 } |
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334 else if (key == "scaling") |
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335 { |
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336 scaling_ = ParseDouble(key, value); |
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337 return true; |
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338 } |
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339 else if (key == "offset-x") |
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340 { |
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341 offsetX_ = ParseDouble(key, value); |
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342 return true; |
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343 } |
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344 else if (key == "offset-y") |
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345 { |
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346 offsetY_ = ParseDouble(key, value); |
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347 return true; |
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348 } |
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349 else if (key == "flip-x") |
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350 { |
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351 flipX_ = ParseBoolean(key, value); |
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352 return true; |
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353 } |
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354 else if (key == "flip-y") |
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355 { |
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356 flipY_ = ParseBoolean(key, value); |
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357 return true; |
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358 } |
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359 else if (key == "resize") |
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360 { |
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361 std::vector<std::string> tokens; |
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362 Orthanc::Toolbox::TokenizeString(tokens, value, ','); |
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363 if (tokens.size() != 2) |
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364 { |
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365 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, |
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366 "Must provide two integers separated by commas in " + key + ": " + value); |
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367 } |
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368 else |
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369 { |
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370 targetWidth_ = ParseUnsignedInteger(key, tokens[0]); |
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371 targetHeight_ = ParseUnsignedInteger(key, tokens[1]); |
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372 hasResize_ = true; |
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373 return true; |
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374 } |
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375 } |
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376 else |
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377 { |
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378 return false; |
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379 } |
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380 } |
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381 |
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382 |
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383 Orthanc::ImageAccessor* Apply(const Orthanc::ImageAccessor& source) |
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384 { |
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385 if (source.GetFormat() != Orthanc::PixelFormat_RGB24 && |
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386 source.GetFormat() != Orthanc::PixelFormat_Float32) |
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387 { |
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388 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat); |
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389 } |
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390 else |
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391 { |
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392 return ApplyUnchecked(source); |
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393 } |
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394 } |
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395 |
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396 |
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397 Orthanc::ImageAccessor* ApplyBinaryMask(const Orthanc::ImageAccessor& source) |
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398 { |
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399 if (source.GetFormat() != Orthanc::PixelFormat_Grayscale8) |
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400 { |
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401 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat, |
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402 "A segmentation mask should be a grayscale image"); |
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403 } |
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404 else |
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405 { |
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406 std::unique_ptr<Orthanc::ImageAccessor> target(ApplyUnchecked(source)); |
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407 |
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408 const unsigned int h = target->GetHeight(); |
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409 const unsigned int w = target->GetWidth(); |
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410 |
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411 // Apply thresholding to get back a binary image |
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412 for (unsigned int y = 0; y < h; y++) |
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413 { |
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414 uint8_t* p = reinterpret_cast<uint8_t*>(target->GetRow(y)); |
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415 for (unsigned int x = 0; x < w; x++, p++) |
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416 { |
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417 if (*p < 128) |
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418 { |
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419 *p = 0; |
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420 } |
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421 else |
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422 { |
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423 *p = 255; |
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424 } |
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425 } |
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426 } |
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427 |
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428 return target.release(); |
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429 } |
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430 } |
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431 }; |
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432 |
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433 |
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434 static OrthancStone::DicomInstanceParameters* GetInstanceParameters(const std::string& orthancId) |
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435 { |
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436 OrthancPlugins::MemoryBuffer tags; |
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437 if (!tags.RestApiGet("/instances/" + orthancId + "/tags", false)) |
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438 { |
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439 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem); |
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440 } |
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441 |
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442 Json::Value json; |
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443 tags.ToJson(json); |
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444 |
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445 Orthanc::DicomMap m; |
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446 m.FromDicomAsJson(json); |
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447 |
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448 return new OrthancStone::DicomInstanceParameters(m); |
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449 } |
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450 |
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451 |
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452 static void AnswerNumpyImage(OrthancPluginRestOutput* output, |
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453 const Orthanc::ImageAccessor& image, |
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454 bool compress) |
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455 { |
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456 std::string answer; |
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457 Orthanc::NumpyWriter writer; |
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458 writer.SetCompressed(compress); |
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459 Orthanc::IImageWriter::WriteToMemory(writer, answer, image); |
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460 |
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461 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, |
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462 answer.c_str(), answer.size(), "application/octet-stream"); |
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463 } |
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464 |
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465 |
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466 static void RenderNumpyFrame(OrthancPluginRestOutput* output, |
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467 const char* url, |
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468 const OrthancPluginHttpRequest* request) |
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469 { |
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470 DataAugmentationParameters dataAugmentation; |
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471 bool compress = false; |
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472 |
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473 for (uint32_t i = 0; i < request->getCount; i++) |
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474 { |
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475 std::string key(request->getKeys[i]); |
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476 std::string value(request->getValues[i]); |
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477 |
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478 if (!dataAugmentation.ParseParameter(key, value)) |
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479 { |
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480 if (key == "compress") |
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481 { |
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482 compress = ParseBoolean(key, value); |
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483 } |
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484 else |
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485 { |
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486 LOG(WARNING) << "Unsupported option for data augmentation: " << key; |
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487 } |
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488 } |
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489 } |
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490 |
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491 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(request->groups[0])); |
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492 |
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493 OrthancPlugins::MemoryBuffer dicom; |
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494 dicom.GetDicomInstance(request->groups[0]); |
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495 |
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496 unsigned int frame = boost::lexical_cast<unsigned int>(request->groups[1]); |
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497 |
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498 OrthancPlugins::OrthancImage image; |
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499 image.DecodeDicomImage(dicom.GetData(), dicom.GetSize(), frame); |
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500 |
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501 Orthanc::ImageAccessor source; |
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502 source.AssignReadOnly(Convert(image.GetPixelFormat()), image.GetWidth(), image.GetHeight(), |
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503 image.GetPitch(), image.GetBuffer()); |
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504 |
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505 std::unique_ptr<Orthanc::ImageAccessor> modified; |
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506 |
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507 if (parameters->GetSopClassUid() == OrthancStone::SopClassUid_DicomSeg) |
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508 { |
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509 modified.reset(dataAugmentation.ApplyBinaryMask(source)); |
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510 } |
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511 else if (source.GetFormat() == Orthanc::PixelFormat_RGB24) |
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512 { |
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513 modified.reset(dataAugmentation.Apply(source)); |
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514 } |
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515 else |
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516 { |
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517 std::unique_ptr<Orthanc::ImageAccessor> converted(parameters->ConvertToFloat(source)); |
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518 assert(converted.get() != NULL); |
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519 |
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520 modified.reset(dataAugmentation.Apply(*converted)); |
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521 } |
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522 |
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523 assert(modified.get() != NULL); |
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524 AnswerNumpyImage(output, *modified, compress); |
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525 } |
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526 |
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527 |
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528 static bool IsRtStruct(const std::string& instanceId) |
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529 { |
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530 static const char* SOP_CLASS_UID = "0008,0016"; |
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531 static const char* RT_STRUCT_IOD = "1.2.840.10008.5.1.4.1.1.481.3"; |
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532 |
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533 std::string s; |
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534 if (OrthancPlugins::RestApiGetString(s, "/instances/" + instanceId + "/content/" + SOP_CLASS_UID, false) && |
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535 !s.empty()) |
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536 { |
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537 if (s[s.size() - 1] == '\0') // Deal with DICOM padding |
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538 { |
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539 s.resize(s.size() - 1); |
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540 } |
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541 |
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542 return s == RT_STRUCT_IOD; |
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543 } |
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544 else |
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545 { |
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546 return false; |
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547 } |
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548 } |
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549 |
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550 |
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551 static void ListRtStruct(OrthancPluginRestOutput* output, |
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552 const char* url, |
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553 const OrthancPluginHttpRequest* request) |
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554 { |
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555 // This is a quick version of "/tools/find" on "SOPClassUID" (the |
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556 // latter would load all the DICOM files from disk) |
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557 |
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558 static const char* INSTANCES = "Instances"; |
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559 |
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560 Json::Value series; |
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561 OrthancPlugins::RestApiGet(series, "/series?expand", false); |
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562 |
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563 if (series.type() != Json::arrayValue) |
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564 { |
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565 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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566 } |
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567 |
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568 Json::Value answer = Json::arrayValue; |
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569 |
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570 for (Json::Value::ArrayIndex i = 0; i < series.size(); i++) |
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571 { |
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572 if (series[i].type() != Json::objectValue || |
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573 !series[i].isMember(INSTANCES) || |
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574 series[i][INSTANCES].type() != Json::arrayValue) |
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575 { |
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576 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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577 } |
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578 |
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579 const Json::Value& instances = series[i][INSTANCES]; |
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580 |
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581 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++) |
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582 { |
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583 if (instances[j].type() != Json::stringValue) |
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584 { |
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585 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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586 } |
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587 } |
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588 |
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589 if (instances.size() > 0 && |
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590 IsRtStruct(instances[0].asString())) |
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591 { |
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592 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++) |
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593 { |
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594 answer.append(instances[j].asString()); |
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595 } |
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596 } |
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597 } |
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598 |
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599 std::string s = answer.toStyledString(); |
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600 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json"); |
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601 } |
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602 |
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603 |
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604 static void GetRtStruct(OrthancPluginRestOutput* output, |
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605 const char* url, |
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606 const OrthancPluginHttpRequest* request) |
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607 { |
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608 static const char* STRUCTURES = "Structures"; |
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609 static const char* INSTANCES = "Instances"; |
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610 |
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611 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]); |
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612 |
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613 if (!accessor.IsValid()) |
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614 { |
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615 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem); |
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616 } |
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617 |
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618 Json::Value answer; |
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619 answer[STRUCTURES] = Json::arrayValue; |
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620 |
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621 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++) |
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622 { |
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623 Json::Value color = Json::arrayValue; |
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624 color.append(accessor.GetRtStruct().GetStructureColor(i).GetRed()); |
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625 color.append(accessor.GetRtStruct().GetStructureColor(i).GetGreen()); |
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626 color.append(accessor.GetRtStruct().GetStructureColor(i).GetBlue()); |
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627 |
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628 Json::Value structure; |
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629 structure["Name"] = accessor.GetRtStruct().GetStructureName(i); |
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630 structure["Interpretation"] = accessor.GetRtStruct().GetStructureInterpretation(i); |
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631 structure["Color"] = color; |
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632 |
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633 answer[STRUCTURES].append(structure); |
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634 } |
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635 |
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636 std::set<std::string> sopInstanceUids; |
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637 accessor.GetRtStruct().GetReferencedInstances(sopInstanceUids); |
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638 |
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639 answer[INSTANCES] = Json::arrayValue; |
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640 for (std::set<std::string>::const_iterator it = sopInstanceUids.begin(); it != sopInstanceUids.end(); ++it) |
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641 { |
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642 OrthancPlugins::OrthancString s; |
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643 s.Assign(OrthancPluginLookupInstance(OrthancPlugins::GetGlobalContext(), it->c_str())); |
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644 |
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645 std::string t; |
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646 s.ToString(t); |
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647 |
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648 answer[INSTANCES].append(t); |
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649 } |
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650 |
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651 std::string s = answer.toStyledString(); |
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652 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json"); |
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653 } |
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654 |
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655 |
1888
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656 |
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657 static void RenderRtStruct(OrthancPluginRestOutput* output, |
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658 const char* url, |
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659 const OrthancPluginHttpRequest* request) |
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660 { |
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661 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]); |
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662 |
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663 if (!accessor.IsValid()) |
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664 { |
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665 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem); |
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666 } |
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667 |
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668 std::string structureName; |
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669 std::string instanceId; |
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670 |
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671 for (uint32_t i = 0; i < request->getCount; i++) |
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672 { |
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673 std::string key(request->getKeys[i]); |
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674 std::string value(request->getValues[i]); |
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675 |
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676 if (key == "structure") |
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677 { |
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678 structureName = value; |
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679 } |
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680 else if (key == "instance") |
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681 { |
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682 instanceId = value; |
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683 } |
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684 else |
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685 { |
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686 LOG(WARNING) << "Unsupported option: " << key; |
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687 } |
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688 } |
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689 |
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690 if (structureName.empty()) |
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691 { |
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692 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, |
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693 "Missing option \"structure\" to provide the structure name"); |
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694 } |
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695 |
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696 if (instanceId.empty()) |
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697 { |
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|
698 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, |
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699 "Missing option \"instance\" to provide the Orthanc identifier of the instance of interest"); |
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|
700 } |
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|
701 |
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702 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(instanceId)); |
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|
703 |
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704 size_t structureIndex; |
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|
705 bool found = false; |
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|
706 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++) |
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|
707 { |
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diff
changeset
|
708 if (accessor.GetRtStruct().GetStructureName(i) == structureName) |
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|
709 { |
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|
710 structureIndex = i; |
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|
711 found = true; |
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|
712 break; |
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|
713 } |
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diff
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|
714 } |
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|
715 |
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diff
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|
716 if (!found) |
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diff
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|
717 { |
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|
718 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem, |
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parents:
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diff
changeset
|
719 "Unknown structure name: " + structureName); |
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diff
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|
720 } |
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changeset
|
721 |
1888
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diff
changeset
|
722 std::list< std::vector<OrthancStone::Vector> > polygons; |
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parents:
1887
diff
changeset
|
723 accessor.GetRtStruct().GetStructurePoints(polygons, structureIndex, parameters->GetSopInstanceUid()); |
9bdce2c91620
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parents:
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diff
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|
724 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1887
diff
changeset
|
725 Orthanc::Image tmp(Orthanc::PixelFormat_Grayscale8, parameters->GetWidth(), parameters->GetHeight(), false); |
9bdce2c91620
start rendering rt-struct
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parents:
1887
diff
changeset
|
726 Orthanc::ImageProcessing::Set(tmp, 0); |
9bdce2c91620
start rendering rt-struct
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parents:
1887
diff
changeset
|
727 |
9bdce2c91620
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parents:
1887
diff
changeset
|
728 for (std::list< std::vector<OrthancStone::Vector> >::const_iterator |
9bdce2c91620
start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1887
diff
changeset
|
729 it = polygons.begin(); it != polygons.end(); ++it) |
1885
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parents:
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diff
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|
730 { |
1888
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start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1887
diff
changeset
|
731 std::vector<Orthanc::ImageProcessing::ImagePoint> points; |
9bdce2c91620
start rendering rt-struct
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parents:
1887
diff
changeset
|
732 points.reserve(it->size()); |
1885
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diff
changeset
|
733 |
1888
9bdce2c91620
start rendering rt-struct
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parents:
1887
diff
changeset
|
734 for (size_t i = 0; i < it->size(); i++) |
9bdce2c91620
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parents:
1887
diff
changeset
|
735 { |
9bdce2c91620
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parents:
1887
diff
changeset
|
736 double x, y; |
9bdce2c91620
start rendering rt-struct
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parents:
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diff
changeset
|
737 parameters->GetGeometry().ProjectPoint(x, y, (*it) [i]); |
9bdce2c91620
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parents:
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diff
changeset
|
738 points.push_back(Orthanc::ImageProcessing::ImagePoint(x, y)); |
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parents:
1887
diff
changeset
|
739 } |
9bdce2c91620
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1887
diff
changeset
|
740 |
9bdce2c91620
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parents:
1887
diff
changeset
|
741 Orthanc::ImageProcessing::FillPolygon(tmp, points, 255); |
1885
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diff
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|
742 } |
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changeset
|
743 |
1888
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changeset
|
744 AnswerNumpyImage(output, tmp, true); |
1885
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diff
changeset
|
745 } |
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diff
changeset
|
746 |
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diff
changeset
|
747 |
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diff
changeset
|
748 OrthancPluginErrorCode OnChangeCallback(OrthancPluginChangeType changeType, |
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diff
changeset
|
749 OrthancPluginResourceType resourceType, |
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diff
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|
750 const char* resourceId) |
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|
751 { |
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parents:
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|
752 switch (changeType) |
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diff
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|
753 { |
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parents:
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diff
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|
754 case OrthancPluginChangeType_Deleted: |
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diff
changeset
|
755 if (resourceType == OrthancPluginResourceType_Instance) |
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diff
changeset
|
756 { |
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parents:
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diff
changeset
|
757 DicomStructureCache::GetSingleton().Invalidate(resourceId); |
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parents:
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diff
changeset
|
758 } |
ddaee6b96501
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parents:
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diff
changeset
|
759 |
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diff
changeset
|
760 break; |
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parents:
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diff
changeset
|
761 |
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parents:
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diff
changeset
|
762 default: |
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parents:
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diff
changeset
|
763 break; |
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parents:
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diff
changeset
|
764 } |
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diff
changeset
|
765 |
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parents:
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diff
changeset
|
766 return OrthancPluginErrorCode_Success; |
1882
4e80b8afd0da
numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1877
diff
changeset
|
767 } |
4e80b8afd0da
numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1877
diff
changeset
|
768 |
1877
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
769 |
a2955abe4c2e
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parents:
diff
changeset
|
770 extern "C" |
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skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
771 { |
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skeleton for the RenderingPlugin
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parents:
diff
changeset
|
772 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context) |
a2955abe4c2e
skeleton for the RenderingPlugin
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parents:
diff
changeset
|
773 { |
a2955abe4c2e
skeleton for the RenderingPlugin
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parents:
diff
changeset
|
774 OrthancPlugins::SetGlobalContext(context); |
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parents:
diff
changeset
|
775 |
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parents:
diff
changeset
|
776 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2) |
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parents:
diff
changeset
|
777 Orthanc::Logging::InitializePluginContext(context); |
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skeleton for the RenderingPlugin
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parents:
diff
changeset
|
778 #else |
a2955abe4c2e
skeleton for the RenderingPlugin
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parents:
diff
changeset
|
779 Orthanc::Logging::Initialize(context); |
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skeleton for the RenderingPlugin
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diff
changeset
|
780 #endif |
a2955abe4c2e
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parents:
diff
changeset
|
781 |
a2955abe4c2e
skeleton for the RenderingPlugin
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parents:
diff
changeset
|
782 /* Check the version of the Orthanc core */ |
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parents:
diff
changeset
|
783 if (OrthancPluginCheckVersion(context) == 0) |
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parents:
diff
changeset
|
784 { |
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parents:
diff
changeset
|
785 char info[1024]; |
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skeleton for the RenderingPlugin
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parents:
diff
changeset
|
786 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin", |
a2955abe4c2e
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parents:
diff
changeset
|
787 context->orthancVersion, |
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parents:
diff
changeset
|
788 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, |
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parents:
diff
changeset
|
789 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, |
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parents:
diff
changeset
|
790 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); |
a2955abe4c2e
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parents:
diff
changeset
|
791 OrthancPluginLogError(context, info); |
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parents:
diff
changeset
|
792 return -1; |
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parents:
diff
changeset
|
793 } |
a2955abe4c2e
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parents:
diff
changeset
|
794 |
a2955abe4c2e
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parents:
diff
changeset
|
795 try |
a2955abe4c2e
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parents:
diff
changeset
|
796 { |
1882
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parents:
1877
diff
changeset
|
797 OrthancPlugins::RegisterRestCallback<RenderNumpyFrame>("/stone/instances/([^/]+)/frames/([0-9]+)/numpy", true); |
1885
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|
798 OrthancPlugins::RegisterRestCallback<ListRtStruct>("/stone/rt-struct", true); |
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changeset
|
799 OrthancPlugins::RegisterRestCallback<GetRtStruct>("/stone/rt-struct/([^/]+)/info", true); |
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changeset
|
800 OrthancPlugins::RegisterRestCallback<RenderRtStruct>("/stone/rt-struct/([^/]+)/numpy", true); |
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changeset
|
801 OrthancPluginRegisterOnChangeCallback(context, OnChangeCallback); |
1877
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parents:
diff
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|
802 } |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
803 catch (...) |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
804 { |
a2955abe4c2e
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parents:
diff
changeset
|
805 OrthancPlugins::LogError("Exception while initializing the Stone Web viewer plugin"); |
a2955abe4c2e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
806 return -1; |
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skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
807 } |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
808 |
a2955abe4c2e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
809 return 0; |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
810 } |
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skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
811 |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
812 |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
813 ORTHANC_PLUGINS_API void OrthancPluginFinalize() |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
814 { |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
815 } |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
816 |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
817 |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
818 ORTHANC_PLUGINS_API const char* OrthancPluginGetName() |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
819 { |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
820 return PLUGIN_NAME; |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
821 } |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
822 |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
823 |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
824 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
825 { |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
826 return PLUGIN_VERSION; |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
827 } |
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
828 } |