Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Loaders/SeriesMetadataLoader.cpp @ 1945:98952be6fb97
rendering plugin: rendering of multiple structures
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 02 Jun 2022 12:23:45 +0200 |
parents | 7053b8a0aaec |
children | 07964689cb0b |
rev | line source |
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1 /** |
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2 * Stone of Orthanc |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
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21 **/ |
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22 |
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23 |
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24 #include "SeriesMetadataLoader.h" |
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25 |
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26 #include <DicomFormat/DicomInstanceHasher.h> |
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27 |
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28 namespace OrthancStone |
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29 { |
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30 SeriesMetadataLoader::SeriesMetadataLoader(boost::shared_ptr<DicomResourcesLoader>& loader) : |
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31 loader_(loader), |
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32 state_(State_Setup) |
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33 { |
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34 } |
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35 |
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36 |
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37 bool SeriesMetadataLoader::IsScheduledWithHigherPriority(const std::string& seriesInstanceUid, |
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38 int priority) const |
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39 { |
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40 if (series_.find(seriesInstanceUid) != series_.end()) |
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41 { |
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42 // This series is readily available |
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43 return true; |
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44 } |
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45 else |
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46 { |
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47 std::map<std::string, int>::const_iterator found = scheduled_.find(seriesInstanceUid); |
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48 |
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49 return (found != scheduled_.end() && |
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50 found->second < priority); |
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51 } |
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52 } |
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53 |
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54 |
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55 void SeriesMetadataLoader::Handle(const DicomResourcesLoader::SuccessMessage& message) |
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56 { |
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57 assert(message.GetResources()); |
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58 |
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59 switch (state_) |
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60 { |
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61 case State_Setup: |
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62 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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63 |
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64 case State_Default: |
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65 { |
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66 std::string studyInstanceUid; |
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67 std::string seriesInstanceUid; |
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68 |
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69 if (message.GetResources()->LookupTagValueConsensus(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID) && |
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70 message.GetResources()->LookupTagValueConsensus(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID)) |
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71 { |
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72 series_[seriesInstanceUid] = message.GetResources(); |
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73 |
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74 SuccessMessage loadedMessage(*this, message.GetDicomSource(), studyInstanceUid, |
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75 seriesInstanceUid, *message.GetResources()); |
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76 BroadcastMessage(loadedMessage); |
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77 } |
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78 |
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79 break; |
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80 } |
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81 |
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82 case State_DicomDir: |
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83 { |
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84 assert(!dicomDir_); |
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85 assert(seriesSize_.empty()); |
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86 |
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87 dicomDir_ = message.GetResources(); |
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88 |
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89 for (size_t i = 0; i < message.GetResources()->GetSize(); i++) |
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90 { |
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91 std::string seriesInstanceUid; |
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92 if (message.GetResources()->GetResource(i).LookupStringValue |
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93 (seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false)) |
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94 { |
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95 boost::shared_ptr<LoadedDicomResources> target |
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96 (new LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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97 |
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98 if (loader_->ScheduleLoadDicomFile(target, message.GetPriority(), message.GetDicomSource(), dicomDirPath_, |
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99 message.GetResources()->GetResource(i), false /* no need for pixel data */, |
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100 NULL /* TODO PAYLOAD */)) |
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101 { |
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102 std::map<std::string, unsigned int>::iterator found = seriesSize_.find(seriesInstanceUid); |
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103 if (found == seriesSize_.end()) |
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104 { |
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105 series_[seriesInstanceUid].reset |
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106 (new LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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107 seriesSize_[seriesInstanceUid] = 1; |
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108 } |
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109 else |
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110 { |
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111 found->second ++; |
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112 } |
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113 } |
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114 } |
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115 } |
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116 |
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117 LOG(INFO) << "Read a DICOMDIR containing " << seriesSize_.size() << " series"; |
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118 |
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119 state_ = State_DicomFile; |
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120 break; |
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121 } |
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122 |
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123 case State_DicomFile: |
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124 { |
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125 assert(dicomDir_); |
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126 assert(message.GetResources()->GetSize() <= 1); // Could be zero if corrupted DICOM instance |
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127 |
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128 if (message.GetResources()->GetSize() == 1) |
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129 { |
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130 const Orthanc::DicomMap& instance = message.GetResources()->GetResource(0); |
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131 |
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132 std::string studyInstanceUid; |
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133 std::string seriesInstanceUid; |
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134 if (instance.LookupStringValue(studyInstanceUid, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, false) && |
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135 instance.LookupStringValue(seriesInstanceUid, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false)) |
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136 { |
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137 Series::const_iterator series = series_.find(seriesInstanceUid); |
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138 std::map<std::string, unsigned int>::const_iterator size = seriesSize_.find(seriesInstanceUid); |
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139 |
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140 if (series == series_.end() || |
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141 size == seriesSize_.end()) |
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142 { |
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143 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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144 } |
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145 else |
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146 { |
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147 series->second->AddResource(instance); |
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148 |
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149 if (series->second->GetSize() > size->second) |
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150 { |
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151 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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152 } |
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153 else if (series->second->GetSize() == size->second) |
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154 { |
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155 // The series is complete |
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156 SuccessMessage loadedMessage( |
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157 *this, message.GetDicomSource(), |
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158 studyInstanceUid, seriesInstanceUid, *series->second); |
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159 loadedMessage.SetDicomDir(dicomDirPath_, dicomDir_); |
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160 BroadcastMessage(loadedMessage); |
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161 } |
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162 } |
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163 } |
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164 } |
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165 |
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166 break; |
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167 } |
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168 |
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169 default: |
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170 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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171 } |
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172 } |
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173 |
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174 |
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175 SeriesMetadataLoader::SuccessMessage::SuccessMessage( |
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176 const SeriesMetadataLoader& loader, |
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177 const DicomSource& source, |
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178 const std::string& studyInstanceUid, |
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179 const std::string& seriesInstanceUid, |
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180 LoadedDicomResources& instances) : |
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181 OriginMessage(loader), |
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182 source_(source), |
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183 studyInstanceUid_(studyInstanceUid), |
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184 seriesInstanceUid_(seriesInstanceUid), |
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185 instances_(instances) |
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186 { |
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187 LOG(INFO) << "Loaded series " << seriesInstanceUid |
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188 << ", number of instances: " << instances_.GetSize(); |
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189 } |
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190 |
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191 |
1571 | 192 boost::shared_ptr<SeriesMetadataLoader> SeriesMetadataLoader::Create(const ILoadersContext::ILock& context) |
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193 { |
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194 boost::shared_ptr<DicomResourcesLoader> loader(DicomResourcesLoader::Create(context)); |
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195 |
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196 boost::shared_ptr<SeriesMetadataLoader> obj(new SeriesMetadataLoader(loader)); |
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197 obj->Register<DicomResourcesLoader::SuccessMessage>(*loader, &SeriesMetadataLoader::Handle); |
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198 return obj; |
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199 } |
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200 |
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201 |
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202 SeriesMetadataLoader::Accessor::Accessor(SeriesMetadataLoader& that, |
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203 const std::string& seriesInstanceUid) |
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204 { |
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205 Series::const_iterator found = that.series_.find(seriesInstanceUid); |
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206 if (found != that.series_.end()) |
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207 { |
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208 assert(found->second != NULL); |
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209 series_ = found->second; |
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210 } |
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211 } |
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212 |
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213 |
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214 size_t SeriesMetadataLoader::Accessor::GetInstancesCount() const |
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215 { |
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216 if (IsComplete()) |
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217 { |
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218 return series_->GetSize(); |
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219 } |
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220 else |
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221 { |
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222 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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223 } |
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224 } |
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225 |
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226 |
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227 const Orthanc::DicomMap& SeriesMetadataLoader::Accessor::GetInstance(size_t index) const |
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228 { |
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229 if (IsComplete()) |
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230 { |
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231 return series_->GetResource(index); |
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232 } |
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233 else |
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234 { |
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235 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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236 } |
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237 } |
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238 |
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239 |
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240 bool SeriesMetadataLoader::Accessor::LookupInstance(Orthanc::DicomMap& target, |
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241 const std::string& sopInstanceUid) const |
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242 { |
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243 if (IsComplete()) |
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244 { |
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245 if (series_->HasResource(sopInstanceUid)) |
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246 { |
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247 target.Clear(); |
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248 series_->MergeResource(target, sopInstanceUid); |
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249 return true; |
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250 } |
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251 else |
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252 { |
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253 return false; |
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254 } |
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255 } |
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256 else |
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257 { |
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258 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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259 } |
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260 } |
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261 |
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262 |
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263 void SeriesMetadataLoader::ScheduleLoadSeries(int priority, |
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264 const DicomSource& source, |
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265 const std::string& studyInstanceUid, |
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266 const std::string& seriesInstanceUid) |
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267 { |
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268 if (state_ != State_Setup && |
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269 state_ != State_Default) |
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270 { |
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271 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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272 "The loader is working in DICOMDIR state"); |
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273 } |
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274 |
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275 state_ = State_Default; |
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276 |
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277 // Only re-schedule the loading if the previous loading was with lower priority |
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278 if (!IsScheduledWithHigherPriority(seriesInstanceUid, priority)) |
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279 { |
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280 if (source.IsDicomWeb()) |
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281 { |
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282 boost::shared_ptr<LoadedDicomResources> target |
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283 (new LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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284 loader_->ScheduleGetDicomWeb( |
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285 target, priority, source, |
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286 "/studies/" + studyInstanceUid + "/series/" + seriesInstanceUid + "/metadata", |
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287 NULL /* TODO PAYLOAD */); |
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288 |
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289 scheduled_[seriesInstanceUid] = priority; |
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290 } |
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291 else if (source.IsOrthanc()) |
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292 { |
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293 // This flavor of the method is only available with DICOMweb, as |
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294 // Orthanc requires the "PatientID" to be known |
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295 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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296 "The PatientID must be provided on Orthanc sources"); |
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297 } |
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298 else |
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299 { |
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300 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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301 } |
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302 } |
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303 } |
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304 |
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305 |
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306 void SeriesMetadataLoader::ScheduleLoadSeries(int priority, |
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307 const DicomSource& source, |
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308 const std::string& patientId, |
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309 const std::string& studyInstanceUid, |
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310 const std::string& seriesInstanceUid) |
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311 { |
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312 if (state_ != State_Setup && |
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313 state_ != State_Default) |
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314 { |
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315 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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316 "The loader is working in DICOMDIR state"); |
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317 } |
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318 |
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319 state_ = State_Default; |
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320 |
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321 if (source.IsDicomWeb()) |
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322 { |
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323 ScheduleLoadSeries(priority, source, studyInstanceUid, seriesInstanceUid); |
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324 } |
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325 else if (!IsScheduledWithHigherPriority(seriesInstanceUid, priority)) |
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326 { |
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327 if (source.IsOrthanc()) |
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328 { |
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329 // Dummy SOP Instance UID, as we are working at the "series" level |
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330 Orthanc::DicomInstanceHasher hasher(patientId, studyInstanceUid, seriesInstanceUid, "dummy"); |
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331 |
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332 boost::shared_ptr<LoadedDicomResources> target |
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333 (new LoadedDicomResources(Orthanc::DICOM_TAG_SOP_INSTANCE_UID)); |
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334 |
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335 loader_->ScheduleLoadOrthancResources(target, priority, source, Orthanc::ResourceType_Series, |
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336 hasher.HashSeries(), Orthanc::ResourceType_Instance, |
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337 NULL /* TODO PAYLOAD */); |
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338 |
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339 scheduled_[seriesInstanceUid] = priority; |
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340 } |
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341 else |
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342 { |
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343 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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344 } |
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345 } |
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346 } |
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347 |
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348 |
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349 void SeriesMetadataLoader::ScheduleLoadDicomDir(int priority, |
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350 const DicomSource& source, |
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351 const std::string& path) |
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352 { |
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353 if (!source.IsDicomDir()) |
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354 { |
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355 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); |
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356 } |
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357 |
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358 if (state_ != State_Setup) |
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359 { |
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360 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls, |
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361 "The loader cannot load two different DICOMDIR"); |
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362 } |
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363 |
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364 state_ = State_DicomDir; |
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365 dicomDirPath_ = path; |
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366 boost::shared_ptr<LoadedDicomResources> dicomDir |
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367 (new LoadedDicomResources(Orthanc::DICOM_TAG_REFERENCED_SOP_INSTANCE_UID_IN_FILE)); |
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368 loader_->ScheduleLoadDicomDir(dicomDir, priority, source, path, |
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369 NULL /* TODO PAYLOAD */); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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370 } |
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371 } |