Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Toolbox/OsiriX/CollectionOfAnnotations.cpp @ 1893:90b5e116a5f9

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removed DicomStructureSet::GetStructureColor()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 19 Jan 2022 14:01:57 +0100
parents 7053b8a0aaec
children 07964689cb0b
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
1871
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "CollectionOfAnnotations.h"
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25
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26 #include "ArrayValue.h"
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27 #include "IntegerValue.h"
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28
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29 #include <OrthancException.h>
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30
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31 #include <cassert>
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32
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33 namespace OrthancStone
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34 {
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35 namespace OsiriX
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36 {
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37 static void GetAttributes(std::map<std::string, std::string>& target,
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38 const pugi::xml_node& node)
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39 {
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40 for (pugi::xml_attribute attr = node.first_attribute(); attr; attr = attr.next_attribute())
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41 {
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42 target[attr.name()] = attr.value();
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43 }
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44 }
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45
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46
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47 void CollectionOfAnnotations::Clear()
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48 {
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49 for (size_t i = 0; i < annotations_.size(); i++)
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50 {
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51 assert(annotations_[i] != NULL);
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52 delete annotations_[i];
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53 }
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54
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55 annotations_.clear();
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56 index_.clear();
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57 }
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58
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59
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60 const Annotation& CollectionOfAnnotations::GetAnnotation(size_t i) const
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61 {
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62 if (i >= annotations_.size())
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63 {
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64 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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65 }
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66 else
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67 {
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68 assert(annotations_[i] != NULL);
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69 return *annotations_[i];
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70 }
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71 }
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72
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73
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74 void CollectionOfAnnotations::AddAnnotation(Annotation* annotation)
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75 {
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76 if (annotation == NULL)
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77 {
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78 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
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79 }
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80 else
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81 {
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82 size_t pos = annotations_.size();
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83 annotations_.push_back(annotation);
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84
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85 SopInstanceUidIndex::iterator found = index_.find(annotation->GetSopInstanceUid());
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86 if (found == index_.end())
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87 {
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88 std::set<size_t> s;
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89 s.insert(pos);
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90 index_[annotation->GetSopInstanceUid()] = s;
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91 }
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92 else
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93 {
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94 found->second.insert(pos);
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95 }
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96 }
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97 }
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98
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99
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100 void CollectionOfAnnotations::LookupSopInstanceUid(std::set<size_t>& target,
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101 const std::string& sopInstanceUid) const
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102 {
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103 SopInstanceUidIndex::const_iterator found = index_.find(sopInstanceUid);
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104 if (found == index_.end())
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105 {
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106 target.clear();
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107 }
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108 else
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109 {
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110 target = found->second;
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111 }
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112 }
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113
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114
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115 void CollectionOfAnnotations::LoadXml(const char* xml,
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116 size_t size)
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117 {
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118 pugi::xml_document doc;
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119 pugi::xml_parse_result result = doc.load_buffer(xml, size);
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120 if (!result)
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121 {
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122 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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123 }
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124
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125 const pugi::xml_node& root = doc.document_element();
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126 if (std::string(root.name()) != "plist" ||
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127 !root.first_child() ||
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128 root.first_child() != root.last_child())
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129 {
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130 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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131 }
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132
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133 std::map<std::string, std::string> attributes;
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134 GetAttributes(attributes, root);
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135
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136 std::map<std::string, std::string>::const_iterator version = attributes.find("version");
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137 if (version == attributes.end() ||
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138 version->second != "1.0")
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139 {
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140 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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141 }
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142
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143 std::unique_ptr<IValue> value(IValue::Parse(root.first_child()));
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144
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145 const DictionaryValue& dict = dynamic_cast<const DictionaryValue&>(*value);
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146
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147 std::set<std::string> annotations;
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148 dict.GetMembers(annotations);
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149
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150 for (std::set<std::string>::const_iterator
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151 it = annotations.begin(); it != annotations.end(); ++it)
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152 {
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153 const ArrayValue& images = dynamic_cast<const ArrayValue&>(dict.GetValue(*it));
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154
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155 for (size_t i = 0; i < images.GetSize(); i++)
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156 {
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157 const DictionaryValue& image = dynamic_cast<const DictionaryValue&>(images.GetValue(i));
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158 const IntegerValue& number = dynamic_cast<const IntegerValue&>(image.GetValue("NumberOfROIs"));
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159 const ArrayValue& rois = dynamic_cast<const ArrayValue&>(image.GetValue("ROIs"));
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160
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161 if (static_cast<int64_t>(rois.GetSize()) != number.GetValue())
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162 {
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163 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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164 }
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165
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166 for (size_t j = 0; j < rois.GetSize(); j++)
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167 {
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168 const DictionaryValue& roi = dynamic_cast<const DictionaryValue&>(rois.GetValue(i));
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169
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170 std::unique_ptr<Annotation> annotation(Annotation::Create(roi));
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171 if (annotation.get() != NULL)
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172 {
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173 AddAnnotation(annotation.release());
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174 }
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175 }
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176 }
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177 }
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178 }
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179 }
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180 }