annotate Framework/Toolbox/VolumeImageGeometry.cpp @ 684:7719eb852dd5

new class: VolumeImageGeometry
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 16 May 2019 16:47:46 +0200
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children 93a8949a1ef7
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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20
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21
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22 #include "VolumeImageGeometry.h"
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23
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24 #include "../Toolbox/GeometryToolbox.h"
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25
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26 #include <Core/OrthancException.h>
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27
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28
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29 namespace OrthancStone
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30 {
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31 void VolumeImageGeometry::Invalidate()
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32 {
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33 Vector p = (axialGeometry_.GetOrigin() +
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34 static_cast<double>(depth_ - 1) * voxelDimensions_[2] * axialGeometry_.GetNormal());
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35
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36 coronalGeometry_ = CoordinateSystem3D(p,
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37 axialGeometry_.GetAxisX(),
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38 -axialGeometry_.GetNormal());
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39
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40 sagittalGeometry_ = CoordinateSystem3D(p,
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41 axialGeometry_.GetAxisY(),
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42 -axialGeometry_.GetNormal());
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43
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44 Vector origin = (
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45 axialGeometry_.MapSliceToWorldCoordinates(-0.5 * voxelDimensions_[0],
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46 -0.5 * voxelDimensions_[1]) -
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47 0.5 * voxelDimensions_[2] * axialGeometry_.GetNormal());
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48
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49 Vector scaling;
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50
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51 if (width_ == 0 ||
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52 height_ == 0 ||
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53 depth_ == 0)
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54 {
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55 LinearAlgebra::AssignVector(scaling, 1, 1, 1);
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56 }
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57 else
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58 {
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59 scaling = (
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60 axialGeometry_.GetAxisX() * voxelDimensions_[0] * static_cast<double>(width_) +
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61 axialGeometry_.GetAxisY() * voxelDimensions_[1] * static_cast<double>(height_) +
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62 axialGeometry_.GetNormal() * voxelDimensions_[2] * static_cast<double>(depth_));
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63 }
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64
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65 transform_ = LinearAlgebra::Product(
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66 GeometryToolbox::CreateTranslationMatrix(origin[0], origin[1], origin[2]),
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67 GeometryToolbox::CreateScalingMatrix(scaling[0], scaling[1], scaling[2]));
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68
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69 LinearAlgebra::InvertMatrix(transformInverse_, transform_);
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70 }
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71
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72
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73 VolumeImageGeometry::VolumeImageGeometry() :
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74 width_(0),
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75 height_(0),
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76 depth_(0)
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77 {
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78 LinearAlgebra::AssignVector(voxelDimensions_, 1, 1, 1);
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79 Invalidate();
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80 }
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81
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82
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83 void VolumeImageGeometry::SetSize(unsigned int width,
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84 unsigned int height,
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85 unsigned int depth)
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86 {
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87 width_ = width;
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88 height_ = height;
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89 depth_ = depth;
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90 Invalidate();
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91 }
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92
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93
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94 void VolumeImageGeometry::SetAxialGeometry(const CoordinateSystem3D& geometry)
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95 {
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96 axialGeometry_ = geometry;
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97 Invalidate();
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98 }
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99
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100
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101 void VolumeImageGeometry::SetVoxelDimensions(double x,
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102 double y,
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103 double z)
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104 {
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105 if (x <= 0 ||
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106 y <= 0 ||
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107 z <= 0)
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108 {
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109 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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110 }
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111 else
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112 {
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113 LinearAlgebra::AssignVector(voxelDimensions_, x, y, z);
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114 Invalidate();
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115 }
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116 }
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117
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118
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119 Vector VolumeImageGeometry::GetVoxelDimensions(VolumeProjection projection) const
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120 {
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121 switch (projection)
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122 {
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123 case VolumeProjection_Axial:
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124 return voxelDimensions_;
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125
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126 case VolumeProjection_Coronal:
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127 return LinearAlgebra::CreateVector(voxelDimensions_[0], voxelDimensions_[2], voxelDimensions_[1]);
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128
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129 case VolumeProjection_Sagittal:
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130 return LinearAlgebra::CreateVector(voxelDimensions_[1], voxelDimensions_[2], voxelDimensions_[0]);
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131
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132 default:
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133 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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134 }
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135 }
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136
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137
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138 void VolumeImageGeometry::GetSliceSize(unsigned int& width,
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139 unsigned int& height,
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140 VolumeProjection projection)
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141 {
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142 switch (projection)
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143 {
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144 case VolumeProjection_Axial:
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145 width = width_;
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146 height = height_;
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147 break;
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148
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149 case VolumeProjection_Coronal:
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150 width = width_;
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151 height = depth_;
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152 break;
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153
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154 case VolumeProjection_Sagittal:
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155 width = height_;
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156 height = depth_;
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157 break;
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158
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159 default:
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160 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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161 }
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162 }
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163
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164
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165
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166 Vector VolumeImageGeometry::GetCoordinates(float x,
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167 float y,
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168 float z) const
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169 {
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170 Vector p = LinearAlgebra::Product(transform_, LinearAlgebra::CreateVector(x, y, z, 1));
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171
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172 assert(LinearAlgebra::IsNear(p[3], 1)); // Affine transform, no perspective effect
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173
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174 // Back to non-homogeneous coordinates
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175 return LinearAlgebra::CreateVector(p[0], p[1], p[2]);
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176 }
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177
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178
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179 bool VolumeImageGeometry::DetectProjection(VolumeProjection& projection,
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180 const CoordinateSystem3D& plane) const
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181 {
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182 if (GeometryToolbox::IsParallel(plane.GetNormal(),
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183 axialGeometry_.GetNormal()))
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184 {
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185 projection = VolumeProjection_Axial;
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186 return true;
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187 }
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188 else if (GeometryToolbox::IsParallel(plane.GetNormal(),
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189 coronalGeometry_.GetNormal()))
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190 {
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191 projection = VolumeProjection_Coronal;
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192 return true;
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193 }
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194 else if (GeometryToolbox::IsParallel(plane.GetNormal(),
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195 sagittalGeometry_.GetNormal()))
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196 {
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197 projection = VolumeProjection_Sagittal;
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198 return true;
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199 }
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200 else
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201 {
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202 return false;
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203 }
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204 }
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205 }