annotate Framework/Volumes/DicomVolumeImage.h @ 1090:71c2dc28a85b broker

fix
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 23 Oct 2019 11:43:29 +0200
parents 391fb6d6905d
children 34ee7204fde3 2d8ab34c8c91
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
814
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * the License, or (at your option) any later version.
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * Affero General Public License for more details.
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 *
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #pragma once
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include "../Messages/IMessage.h"
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #include "../Toolbox/DicomInstanceParameters.h"
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 #include "ImageBuffer3D.h"
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 #include "VolumeImageGeometry.h"
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 namespace OrthancStone
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 {
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
31 class IGeometryProvider
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
32 {
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
33 public:
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
34 virtual ~IGeometryProvider() {}
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
35 virtual bool HasGeometry() const = 0;
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
36 virtual const VolumeImageGeometry& GetImageGeometry() const = 0;
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
37 };
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 814
diff changeset
38
814
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 /**
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 This class combines a 3D image buffer, a 3D volume geometry and
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 information about the DICOM parameters of the series.
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 (MPR means MultiPlanar Reconstruction)
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 */
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 class DicomVolumeImage : public boost::noncopyable
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 {
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 public:
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 ORTHANC_STONE_DEFINE_ORIGIN_MESSAGE(__FILE__, __LINE__, GeometryReadyMessage, DicomVolumeImage);
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 ORTHANC_STONE_DEFINE_ORIGIN_MESSAGE(__FILE__, __LINE__, ContentUpdatedMessage, DicomVolumeImage);
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 private:
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 uint64_t revision_;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 std::auto_ptr<VolumeImageGeometry> geometry_;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 std::auto_ptr<ImageBuffer3D> image_;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 std::auto_ptr<DicomInstanceParameters> parameters_;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 void CheckHasGeometry() const;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 public:
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 DicomVolumeImage() :
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 revision_(0)
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 {
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 }
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 void IncrementRevision()
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 {
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 revision_ ++;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 }
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 void Initialize(const VolumeImageGeometry& geometry,
1072
391fb6d6905d OrthancMultiframeVolumeLoader asks volume image to compute range +
Benjamin Golinvaux <bgo@osimis.io>
parents: 949
diff changeset
70 Orthanc::PixelFormat format, bool computeRange = false);
814
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 void SetDicomParameters(const DicomInstanceParameters& parameters);
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 uint64_t GetRevision() const
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 {
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 return revision_;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 }
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 bool HasGeometry() const;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 ImageBuffer3D& GetPixelData();
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 const ImageBuffer3D& GetPixelData() const;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 const VolumeImageGeometry& GetGeometry() const;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 bool HasDicomParameters() const
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 {
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 return parameters_.get() != NULL;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 }
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 const DicomInstanceParameters& GetDicomParameters() const;
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 };
aead999345e0 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 }