Mercurial > hg > orthanc-stone
annotate OrthancStone/UnitTestsSources/SortedFramesCreateTest.py @ 2061:6ea5f40ea0e9 deep-learning
added ImageProcessingProgram
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 03 May 2023 16:34:34 +0200 |
| parents | a2955abe4c2e |
| children | 07964689cb0b |
| rev | line source |
|---|---|
| 1477 | 1 #!/usr/bin/env python |
| 2 | |
|
1589
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
3 # Stone of Orthanc |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
5 # Department, University Hospital of Liege, Belgium |
|
1871
7053b8a0aaec
upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1870
diff
changeset
|
6 # Copyright (C) 2017-2022 Osimis S.A., Belgium |
|
7053b8a0aaec
upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1870
diff
changeset
|
7 # Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
|
1589
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
8 # |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
9 # This program is free software: you can redistribute it and/or |
|
1877
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1871
diff
changeset
|
10 # modify it under the terms of the GNU Lesser General Public License |
|
1589
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
11 # as published by the Free Software Foundation, either version 3 of |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
12 # the License, or (at your option) any later version. |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
13 # |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
14 # This program is distributed in the hope that it will be useful, but |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
15 # WITHOUT ANY WARRANTY; without even the implied warranty of |
|
1877
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1871
diff
changeset
|
16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
|
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1871
diff
changeset
|
17 # Lesser General Public License for more details. |
|
1589
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
18 # |
|
1877
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1871
diff
changeset
|
19 # You should have received a copy of the GNU Lesser General Public |
|
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1871
diff
changeset
|
20 # License along with this program. If not, see |
|
a2955abe4c2e
skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1871
diff
changeset
|
21 # <http://www.gnu.org/licenses/>. |
|
1589
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
22 |
|
8c5f9864545f
adding missing headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1587
diff
changeset
|
23 |
| 1477 | 24 import pprint |
| 25 import requests | |
| 26 import sys | |
| 27 | |
| 28 if len(sys.argv) != 2: | |
| 29 print('Usage: %s [Orthanc series ID]' % sys.argv[0]) | |
| 30 print('Example: %s 4d04593b-953ced51-87e93f11-ae4cf03c-25defdcd | xclip -selection c -t text/plain' % sys.argv[0]) | |
| 31 exit(-1) | |
| 32 | |
| 33 SERIES = sys.argv[1] | |
| 34 | |
| 35 r = requests.get('http://localhost:8042/series/%s/study' % SERIES) | |
| 36 r.raise_for_status() | |
| 37 print(' // From patient %s' % r.json() ['PatientMainDicomTags']['PatientName']) | |
| 38 | |
| 39 r = requests.get('http://localhost:8042/series/%s' % SERIES) | |
| 40 r.raise_for_status() | |
| 41 | |
| 42 first = True | |
| 43 | |
| 44 for instance in r.json() ['Instances']: | |
| 45 tags = requests.get('http://localhost:8042/instances/%s/tags?short' % instance) | |
| 46 tags.raise_for_status() | |
| 47 | |
| 48 if first: | |
| 49 print(''' | |
| 50 Orthanc::DicomMap tags; | |
| 51 tags.SetValue(Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, "%s", false); | |
| 52 tags.SetValue(Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, "%s", false); | |
| 53 OrthancStone::SortedFrames f; | |
| 54 ''' % (tags.json() ['0020,000d'], tags.json() ['0020,000e'])) | |
| 55 first = False | |
| 56 | |
| 57 print(' tags.SetValue(Orthanc::DICOM_TAG_SOP_INSTANCE_UID, "%s", false);' % instance) | |
| 58 | |
| 59 if '0020,0032' in tags.json(): | |
| 60 print(' tags.SetValue(Orthanc::DICOM_TAG_IMAGE_POSITION_PATIENT, "%s", false);' % | |
| 61 tags.json() ['0020,0032'].replace('\\', '\\\\')) | |
| 62 | |
| 63 if '0020,0037' in tags.json(): | |
| 64 print(' tags.SetValue(Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT, "%s", false);' % | |
| 65 tags.json() ['0020,0037'].replace('\\', '\\\\')) | |
| 66 | |
| 67 if '0020,0013' in tags.json(): | |
| 68 print(' tags.SetValue(Orthanc::DICOM_TAG_INSTANCE_NUMBER, "%s", false);' % | |
| 69 tags.json() ['0020,0013'].replace('\\', '\\\\')) | |
| 70 | |
| 71 if '0054,1330' in tags.json(): | |
| 72 print(' tags.SetValue(Orthanc::DICOM_TAG_IMAGE_INDEX, "%s", false);' % | |
| 73 tags.json() ['0054,1330'].replace('\\', '\\\\')) | |
| 74 | |
| 75 print(' f.AddInstance(tags);') | |
| 76 | |
| 77 print(' f.Sort();') | |
| 78 | |
| 79 r = requests.get('http://localhost:8042/series/%s/ordered-slices' % SERIES) | |
| 80 r.raise_for_status() | |
| 81 slices = r.json() ['SlicesShort'] | |
| 82 | |
| 83 print(' ASSERT_EQ(%du, f.GetFramesCount());' % len(slices)) | |
| 84 | |
| 85 for i in range(len(slices)): | |
|
1644
4796fb60999e
removing methods from SortedFrames to simplify api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1589
diff
changeset
|
86 print(' ASSERT_EQ(f.GetInstanceOfFrame(%d).GetSopInstanceUid(), "%s");' % (i, slices[i][0])) |
| 1477 | 87 |