annotate README.md @ 1526:61023b0d39c8

Reverted the Stone Web Viewer plugin to rev. 307a805d0587 (mistakenly changed to serve the RT Viewer and make it available in the Orthanc Explorer while it should have been done in a separate plugin)
author Benjamin Golinvaux <bgo@osimis.io>
date Sun, 02 Aug 2020 13:53:48 +0200
parents c53a4667f895
children 0cbc85e0c583
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 Stone of Orthanc
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 ================
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 General Information
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 -------------------
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 This repository contains the source code of the Stone of Orthanc.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 Stone of Orthanc is a lightweight, cross-platform C++ framework for
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 the CPU-based rendering of medical images. It notably features support
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 for MPR (multiplanar reconstruction of volume images), PET-CT fusion,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 and accurate physical world coordinates.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 Stone of Orthanc comes bundled with its own software-based rendering
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 engine (based upon pixman). This engine will use CPU hardware
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 acceleration if available (notably SSE2, SSSE3, and NEON instruction
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 sets), but not the GPU. This makes Stone a highly versatile framework
9
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
18 that can run even on low-performance platforms. Note that Stone is
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
19 able to display DICOM series without having to entirely store them in
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
20 the RAM (i.e. frame by frame).
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
21
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
22 Thanks to its standalone rendering engine, Stone of Orthanc is also
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
23 compatible with any GUI framework (such as Qt, wxWidgets, MFC...). The
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
24 provided sample applications use the SDL framework.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
9
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
26 Stone is conceived as a companion toolbox to the Orthanc VNA (vendor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
27 neutral archive, i.e. DICOM server). As a consequence, Stone will
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
28 smoothly interface with Orthanc out of the box. Interestingly, Stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
29 does not contain any DICOM toolkit: It entirely relies on the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
30 of Orthanc to parse/decode DICOM images. However, thanks to the
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
31 object-oriented architecture of Stone, it is possible to avoid this
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
32 dependency upon Orthanc, e.g. to download DICOM datasets using
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
33 DICOMweb.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 Comparison
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 ----------
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 Pay attention to the fact that Stone of Orthanc is a toolkit, and not
1
2dbe613f6c93 add orthanc core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
40 a fully-featured application for the visualization of medical images
2dbe613f6c93 add orthanc core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
41 (such as Horos/OsiriX or Ginkgo CADx). However, such applications
445
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
42 can be built on the top of Stone of Orthanc.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 Stone of Orthanc is quite similar to two other well-known toolkits:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 * Cornerstone, a client-side JavaScript toolkit to display medical
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 images in Web browsers, by Chris Hafey <chafey@gmail.com>:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 https://github.com/chafey/cornerstone
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 Contrarily to Cornerstone, Stone of Orthanc can be embedded into
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 native, heavyweight applications.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 * VTK, a C++ toolkit for scientific visualization, by Kitware:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 http://www.vtk.org/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 Contrarily to VTK, Stone of Orthanc is focused on CPU-based, 2D
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 rendering: The GPU will not be used.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 Dependencies
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 ------------
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 Stone of Orthanc is based upon the following projects:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 * Orthanc, a lightweight Vendor Neutral Archive (DICOM server):
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 http://www.orthanc-server.com/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 * Cairo and pixman, a cross-platform 2D graphics library:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 https://www.cairographics.org/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 * Optionally, SDL, a cross-platform multimedia library:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 https://www.libsdl.org/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73
445
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
74 Prerequisites to compile natively on Ubuntu:
222
84844649a8fd continued: reusable applications
am@osimis.io
parents: 211
diff changeset
75 ```
84844649a8fd continued: reusable applications
am@osimis.io
parents: 211
diff changeset
76 sudo apt-get install -y libcairo-dev libpixman-1-dev libsdl2-dev
84844649a8fd continued: reusable applications
am@osimis.io
parents: 211
diff changeset
77 ```
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78
445
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
79 The emscripten SDK is required for the WASM build. Please install it
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
80 in `~/apps/emsdk`. If you wish to use it in another way, please edit
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
81 the `build-wasm.sh` file.
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
82
466
5055031f4a06 - Added browserify to build. This allows using require calls for modules that
bgo-osimis
parents: 445
diff changeset
83 ninja (`sudo apt-get install -y ninja-build`) is used instead of make, for performance reasons.
5055031f4a06 - Added browserify to build. This allows using require calls for modules that
bgo-osimis
parents: 445
diff changeset
84
445
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
85 Installation and usage ----------------------
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 Build instructions are similar to that of Orthanc:
460
4d8ac609fc33 fix link
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 295
diff changeset
88 http://book.orthanc-server.com/faq/compiling.html
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89
41
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 9
diff changeset
90 Usage details are available as part of the Orthanc Book:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 9
diff changeset
91 http://book.orthanc-server.com/developers/stone.html
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 9
diff changeset
92
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 Stone of Orthanc comes with several sample applications in the
1350
c53a4667f895 Sample paths have been adapted
Benjamin Golinvaux <bgo@osimis.io>
parents: 1173
diff changeset
94 `Samples` folder.
1173
1064098f496d Added sample cmake command for bash/zsh
Benjamin Golinvaux <bgo@osimis.io>
parents: 1003
diff changeset
95
1350
c53a4667f895 Sample paths have been adapted
Benjamin Golinvaux <bgo@osimis.io>
parents: 1173
diff changeset
96 Please see the Samples/README.md file for information on the samples building
c53a4667f895 Sample paths have been adapted
Benjamin Golinvaux <bgo@osimis.io>
parents: 1173
diff changeset
97 and running procedure.
445
ee41b6a017d7 dumb change
bgo-osimis
parents: 295
diff changeset
98
265
30dc6e383b0b documented how to build the native sample
am@osimis.io
parents: 264
diff changeset
99
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 Licensing
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 ---------
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102
49
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
103 Stone of Orthanc is licensed under the AGPL license.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 We also kindly ask scientific works and clinical studies that make
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 use of Orthanc to cite Orthanc in their associated publications.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 Similarly, we ask open-source and closed-source products that make
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 use of Orthanc to warn us about this use. You can cite our work
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 using the following BibTeX entry:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110
210
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
111 @Article{Jodogne2018,
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
112 author="Jodogne, S{\'e}bastien",
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
113 title="The {O}rthanc Ecosystem for Medical Imaging",
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
114 journal="Journal of Digital Imaging",
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
115 year="2018",
211
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
116 month="Jun",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
117 day="01",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
118 volume="31",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
119 number="3",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
120 pages="341--352",
210
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
121 issn="1618-727X",
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
122 doi="10.1007/s10278-018-0082-y",
101e487cd154 updated bibtex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
123 url="https://doi.org/10.1007/s10278-018-0082-y"
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 }
501
8424b10df93a Dummy change
bgo-osimis
parents: 466
diff changeset
125