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annotate README.md @ 1327:4f8db2d202c8 broker

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OrthancSeriesProgressiveLoader now has two modes that can be selected at object creation : - progressive (will first load jpeg50, then jpeg90 then PAM) - non-progressive (will directly load PAM (uncompressed)) Please note that the slice loading order remains dynamic and depending upon the slice that the client code wishes to extract from the volume.
author Benjamin Golinvaux <bgo@osimis.io>
date Wed, 25 Mar 2020 14:34:27 +0100
parents 1064098f496d
children c53a4667f895
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1 Stone of Orthanc
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2 ================
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3
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4 General Information
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5 -------------------
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6
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7 This repository contains the source code of the Stone of Orthanc.
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8
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9 Stone of Orthanc is a lightweight, cross-platform C++ framework for
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10 the CPU-based rendering of medical images. It notably features support
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11 for MPR (multiplanar reconstruction of volume images), PET-CT fusion,
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12 and accurate physical world coordinates.
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13
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14 Stone of Orthanc comes bundled with its own software-based rendering
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15 engine (based upon pixman). This engine will use CPU hardware
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16 acceleration if available (notably SSE2, SSSE3, and NEON instruction
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17 sets), but not the GPU. This makes Stone a highly versatile framework
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18 that can run even on low-performance platforms. Note that Stone is
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19 able to display DICOM series without having to entirely store them in
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20 the RAM (i.e. frame by frame).
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21
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22 Thanks to its standalone rendering engine, Stone of Orthanc is also
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23 compatible with any GUI framework (such as Qt, wxWidgets, MFC...). The
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24 provided sample applications use the SDL framework.
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25
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26 Stone is conceived as a companion toolbox to the Orthanc VNA (vendor
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27 neutral archive, i.e. DICOM server). As a consequence, Stone will
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28 smoothly interface with Orthanc out of the box. Interestingly, Stone
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29 does not contain any DICOM toolkit: It entirely relies on the REST API
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30 of Orthanc to parse/decode DICOM images. However, thanks to the
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31 object-oriented architecture of Stone, it is possible to avoid this
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32 dependency upon Orthanc, e.g. to download DICOM datasets using
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33 DICOMweb.
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36 Comparison
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37 ----------
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38
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39 Pay attention to the fact that Stone of Orthanc is a toolkit, and not
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40 a fully-featured application for the visualization of medical images
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41 (such as Horos/OsiriX or Ginkgo CADx). However, such applications
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42 can be built on the top of Stone of Orthanc.
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44 Stone of Orthanc is quite similar to two other well-known toolkits:
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45
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46 * Cornerstone, a client-side JavaScript toolkit to display medical
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47 images in Web browsers, by Chris Hafey <chafey@gmail.com>:
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48 https://github.com/chafey/cornerstone
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49
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50 Contrarily to Cornerstone, Stone of Orthanc can be embedded into
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51 native, heavyweight applications.
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52
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53 * VTK, a C++ toolkit for scientific visualization, by Kitware:
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54 http://www.vtk.org/
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55
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56 Contrarily to VTK, Stone of Orthanc is focused on CPU-based, 2D
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57 rendering: The GPU will not be used.
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58
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60 Dependencies
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61 ------------
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62
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63 Stone of Orthanc is based upon the following projects:
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64
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65 * Orthanc, a lightweight Vendor Neutral Archive (DICOM server):
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66 http://www.orthanc-server.com/
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67
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68 * Cairo and pixman, a cross-platform 2D graphics library:
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69 https://www.cairographics.org/
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70
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71 * Optionally, SDL, a cross-platform multimedia library:
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72 https://www.libsdl.org/
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73
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74 Prerequisites to compile natively on Ubuntu:
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75 ```
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76 sudo apt-get install -y libcairo-dev libpixman-1-dev libsdl2-dev
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77 ```
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78
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79 The emscripten SDK is required for the WASM build. Please install it
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80 in `~/apps/emsdk`. If you wish to use it in another way, please edit
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81 the `build-wasm.sh` file.
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82
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83 ninja (`sudo apt-get install -y ninja-build`) is used instead of make, for performance reasons.
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84
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85 Installation and usage ----------------------
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86
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87 Build instructions are similar to that of Orthanc:
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88 http://book.orthanc-server.com/faq/compiling.html
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89
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90 Usage details are available as part of the Orthanc Book:
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91 http://book.orthanc-server.com/developers/stone.html
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92
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93 Stone of Orthanc comes with several sample applications in the
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94 `Samples` folder. These samples can be compiled into Web Assembly or
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95 into native SDL applications.
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96
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97 The following assumes that the source code to be downloaded in
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98 `~/orthanc-stone` and Orthanc source code to be checked out in
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99 `~/orthanc`.
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100
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101 Building the WASM samples
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102 -------------------------------------
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103 ```
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104 cd ~/orthanc-stone/Applications/Samples
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105 ./build-wasm.sh
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106 ```
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107
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108 Serving the WASM samples
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109 ------------------------------------
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110 ```
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111 # launch an Orthanc listening on 8042 port:
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112 Orthanc
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113
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114 # launch an nginx that will serve the WASM static files and reverse
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115 # proxy
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116 sudo nginx -p $(pwd) -c nginx.local.conf
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117 ```
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118
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119 You can now open the samples in http://localhost:9977
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120
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121 Building the SDL native samples (SimpleViewer only)
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122 ---------------------------------------------------
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123
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124 The following also assumes that you have checked out the Orthanc
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125 source code in an `orthanc` folder next to the Stone of Orthanc
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126 repository, please enter the following:
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127
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128 **Simple make generator with dynamic build**
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129
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130 ```
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131 # Please set $currentDir to the current folder
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132 mkdir -p ~/builds/orthanc-stone-build
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133 cd ~/builds/orthanc-stone-build
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134 cmake -DORTHANC_FRAMEWORK_SOURCE=path \
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135 -DORTHANC_FRAMEWORK_ROOT=$currentDir/../../../orthanc \
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136 -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON \
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137 ~/orthanc-stone/Applications/Samples/
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138 ```
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139
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140 **Ninja generator with static SDL build (pwsh script)**
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141
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142 ```
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143 # Please yourself one level above the orthanc-stone and orthanc folders
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144 if( -not (test-path stone_build_sdl)) { mkdir stone_build_sdl }
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145 cd stone_build_sdl
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146 cmake -G Ninja -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Applications/Samples/
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147 ```
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148
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149 **Ninja generator with static SDL build (bash/zsh script)**
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150
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151 ```
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152 # Please yourself one level above the orthanc-stone and orthanc folders
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153 if( -not (test-path stone_build_sdl)) { mkdir stone_build_sdl }
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154 cd stone_build_sdl
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155 cmake -G Ninja -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="`pwd`/../orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Applications/Samples/
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156 ```
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157
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158 **Visual Studio 2017 generator with static SDL build (pwsh script)**
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159
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160 ```
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161 # The following will use Visual Studio 2017 to build the SDL samples
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162 # in debug mode (with multiple compilers in parallel). NOTE: place
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163 # yourself one level above the `orthanc-stone` and `orthanc` folders
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164
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165 if( -not (test-path stone_build_sdl)) { mkdir stone_build_sdl }
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166 cd stone_build_sdl
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167 cmake -G "Visual Studio 15 2017 Win64" -DMSVC_MULTIPLE_PROCESSES=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Applications/Samples/
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168 cmake --build . --config Debug
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169 ```
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170
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171 If you are working on Windows, add the correct generator option to
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172 cmake to, for instance, generate msbuild files for Visual Studio.
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173
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174 Then, under Linux:
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175 ```
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176 cmake --build . --target OrthancStoneSimpleViewer -- -j 5
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177 ```
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178
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179 Note: replace `$($pwd)` with the current directory when not using Powershell
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180
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181 Building the Qt native samples (SimpleViewer only) under Windows:
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182 ------------------------------------------------------------------
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183
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184 **Visual Studio 2017 generator with static Qt build (pwsh script)**
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185
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186 For instance, if Qt is installed in `C:\Qt\5.12.0\msvc2017_64`
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187
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188 ```
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189 # The following will use Visual Studio 2017 to build the SDL samples
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190 # in debug mode (with multiple compilers in parallel). NOTE: place
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191 # yourself one level above the `orthanc-stone` and `orthanc` folders
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192
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193 if( -not (test-path stone_build_qt)) { mkdir stone_build_qt }
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194 cd stone_build_qt
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195 cmake -G "Visual Studio 15 2017 Win64" -DMSVC_MULTIPLE_PROCESSES=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DCMAKE_PREFIX_PATH=C:\Qt\5.12.0\msvc2017_64 -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_QT=ON ../orthanc-stone/Applications/Samples/
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196 cmake --build . --config Debug
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197 ```
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198
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199 Note: replace `$($pwd)` with the current directory when not using Powershell
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200
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201
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202
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203
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204
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205
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206 Building the SDL native samples (SimpleViewer only) under Windows:
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207 ------------------------------------------------------------------
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208 `cmake -DSTATIC_BUILD=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON -G "Visual Studio 15 2017 Win64" ../orthanc-stone/Applications/Samples/`
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209
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210 Note: replace `$($pwd)` with the current directory when not using Powershell
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211
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212 Executing the native samples:
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213 --------------------------------
265
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214 ```
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215 # launch an Orthanc listening on 8042 port:
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216 Orthanc
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217
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218 # launch the sample
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219 ./OrthancStoneSimpleViewer --studyId=XX
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220 ```
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221
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222 Licensing
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223 ---------
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224
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225 Stone of Orthanc is licensed under the AGPL license.
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226
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227 We also kindly ask scientific works and clinical studies that make
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228 use of Orthanc to cite Orthanc in their associated publications.
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229 Similarly, we ask open-source and closed-source products that make
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230 use of Orthanc to warn us about this use. You can cite our work
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231 using the following BibTeX entry:
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232
210
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233 @Article{Jodogne2018,
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234 author="Jodogne, S{\'e}bastien",
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235 title="The {O}rthanc Ecosystem for Medical Imaging",
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236 journal="Journal of Digital Imaging",
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237 year="2018",
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238 month="Jun",
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239 day="01",
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240 volume="31",
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241 number="3",
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242 pages="341--352",
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243 issn="1618-727X",
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244 doi="10.1007/s10278-018-0082-y",
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245 url="https://doi.org/10.1007/s10278-018-0082-y"
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246 }
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247
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248 Build the Application Samples
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249 -----------------------------
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250
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251 **Visual Studio 2008 (v90) **
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252
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253 ```
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254 cmake -G "Visual Studio 9 2008" -DUSE_LEGACY_JSONCPP=ON -DENABLE_OPENGL=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Applications/Samples
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255 ```
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256
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257 **Visual Studio 2019 (v142) **
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258
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259 ```
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260 cmake -G "Visual Studio 16 2019" -A x64 -DMSVC_MULTIPLE_PROCESSES=ON -DENABLE_OPENGL=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Applications/Samples
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261 ```
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262
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263 **Visual Studio 2017 (v140) **
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264
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265 ```
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266 cmake -G "Visual Studio 15 2017 Win64" -DMSVC_MULTIPLE_PROCESSES=ON -DENABLE_OPENGL=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Applications/Samples
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267 ```
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268
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269
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270 Build the core Samples
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271 ---------------------------
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272 How to build the newest (2019-04-29) SDL samples under Windows, *inside* a
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273 folder that is sibling to the orthanc-stone folder:
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274
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275 **Visual Studio 2019 (v142) **
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276
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277 ```
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278 cmake -G "Visual Studio 16 2019" -A x64 -DMSVC_MULTIPLE_PROCESSES=ON -DENABLE_OPENGL=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Samples/Sdl
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279 ```
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280
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281 **Visual Studio 2017 (v140) **
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282
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283 ```
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284 cmake -G "Visual Studio 15 2017 Win64" -DMSVC_MULTIPLE_PROCESSES=ON -DENABLE_OPENGL=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Samples/Sdl
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285 ```
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286
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287 **Visual Studio 2008 (v90) **
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288
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289 ```
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290 cmake -G "Visual Studio 9 2008" -DUSE_LEGACY_JSONCPP=ON -DENABLE_OPENGL=ON -DSTATIC_BUILD=ON -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="$($pwd)\..\orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Samples/Sdl
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291 ```
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292
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293 And under Ubuntu (note the /mnt/c/osi/dev/orthanc folder):
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294 ```
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295 cmake -G "Ninja" -DENABLE_OPENGL=ON -DSTATIC_BUILD=OFF -DOPENSSL_NO_CAPIENG=ON -DORTHANC_FRAMEWORK_SOURCE=path -DORTHANC_FRAMEWORK_ROOT="/mnt/c/osi/dev/orthanc" -DALLOW_DOWNLOADS=ON -DENABLE_SDL=ON ../orthanc-stone/Samples/Sdl
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296 ```
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297
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298 TODO trackers:
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299 - CANCELLED (using outlined text now) text overlay 50% --> ColorTextureLayer 50%
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300 - DONE angle tracker: draw arcs
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301 - Handles on arc
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302 - Select measure tool with hit test --> Delete command
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303