orthanc-stone: OrthancStone/Sources/Loaders/OrthancMultiframeVolumeLoader.cpp annotate

annotate OrthancStone/Sources/Loaders/OrthancMultiframeVolumeLoader.cpp @ 1543:4cfdaf4ef3fe

fixing paths

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Tue, 11 Aug 2020 14:08:51 +0200
parents	244ad1e4e76a
children	85e117739eca

rev	line source
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	1 /**
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	2 * Stone of Orthanc
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	4 * Department, University Hospital of Liege, Belgium
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	6 *
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	7 * This program is free software: you can redistribute it and/or
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	8 * modify it under the terms of the GNU Affero General Public License
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	9 * as published by the Free Software Foundation, either version 3 of
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	10 * the License, or (at your option) any later version.
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	11 *
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	12 * This program is distributed in the hope that it will be useful, but
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	13 * WITHOUT ANY WARRANTY; without even the implied warranty of
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	15 * Affero General Public License for more details.
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	16 *
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	17 * You should have received a copy of the GNU Affero General Public License
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	19 **/
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	20
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	21
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	22 #include "OrthancMultiframeVolumeLoader.h"
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	23
1455 30deba7bc8e2 simplifying include_directories Sebastien Jodogne <s.jodogne@gmail.com> parents: 1381 diff changeset	24 #include <Endianness.h>
30deba7bc8e2 simplifying include_directories Sebastien Jodogne <s.jodogne@gmail.com> parents: 1381 diff changeset	25 #include <Toolbox.h>
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	26
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	27 namespace OrthancStone
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	28 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	29 class OrthancMultiframeVolumeLoader::LoadRTDoseGeometry : public LoaderStateMachine::State
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	30 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	31 private:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	32 std::unique_ptr<Orthanc::DicomMap> dicom_;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	33
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	34 public:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	35 LoadRTDoseGeometry(OrthancMultiframeVolumeLoader& that,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	36 Orthanc::DicomMap* dicom) :
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	37 State(that),
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	38 dicom_(dicom)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	39 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	40 if (dicom == NULL)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	41 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	42 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	43 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	44
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	45 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	46
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	47 virtual void Handle(const OrthancStone::OrthancRestApiCommand::SuccessMessage& message)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	48 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	49 // Complete the DICOM tags with just-received "Grid Frame Offset Vector"
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	50 std::string s = Orthanc::Toolbox::StripSpaces(message.GetAnswer());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	51 dicom_->SetValue(Orthanc::DICOM_TAG_GRID_FRAME_OFFSET_VECTOR, s, false);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	52
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	53 GetLoader<OrthancMultiframeVolumeLoader>().SetGeometry(*dicom_);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	54 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	55 };
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	56
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	57
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	58 static std::string GetSopClassUid(const Orthanc::DicomMap& dicom)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	59 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	60 std::string s;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	61 if (!dicom.LookupStringValue(s, Orthanc::DICOM_TAG_SOP_CLASS_UID, false))
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	62 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	63 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	64 "DICOM file without SOP class UID");
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	65 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	66 else
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	67 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	68 return s;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	69 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	70 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	71
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	72
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	73 class OrthancMultiframeVolumeLoader::LoadGeometry : public State
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	74 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	75 public:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	76 LoadGeometry(OrthancMultiframeVolumeLoader& that) :
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	77 State(that)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	78 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	79 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	80
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	81 virtual void Handle(const OrthancStone::OrthancRestApiCommand::SuccessMessage& message)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	82 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	83 OrthancMultiframeVolumeLoader& loader = GetLoader<OrthancMultiframeVolumeLoader>();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	84
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	85 Json::Value body;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	86 message.ParseJsonBody(body);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	87
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	88 if (body.type() != Json::objectValue)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	89 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	90 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	91 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	92
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	93 std::unique_ptr<Orthanc::DicomMap> dicom(new Orthanc::DicomMap);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	94 dicom->FromDicomAsJson(body);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	95
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	96 if (OrthancStone::StringToSopClassUid(GetSopClassUid(*dicom)) == OrthancStone::SopClassUid_RTDose)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	97 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	98 // Download the "Grid Frame Offset Vector" DICOM tag, that is
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	99 // mandatory for RT-DOSE, but is too long to be returned by default
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	100
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	101 std::unique_ptr<OrthancStone::OrthancRestApiCommand> command(new OrthancStone::OrthancRestApiCommand);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	102 command->SetUri("/instances/" + loader.GetInstanceId() + "/content/" +
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	103 Orthanc::DICOM_TAG_GRID_FRAME_OFFSET_VECTOR.Format());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	104 command->AcquirePayload(new LoadRTDoseGeometry(loader, dicom.release()));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	105
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	106 Schedule(command.release());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	107 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	108 else
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	109 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	110 loader.SetGeometry(*dicom);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	111 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	112 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	113 };
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	114
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	115 class OrthancMultiframeVolumeLoader::LoadTransferSyntax : public State
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	116 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	117 public:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	118 LoadTransferSyntax(OrthancMultiframeVolumeLoader& that) :
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	119 State(that)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	120 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	121 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	122
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	123 virtual void Handle(const OrthancStone::OrthancRestApiCommand::SuccessMessage& message)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	124 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	125 GetLoader<OrthancMultiframeVolumeLoader>().SetTransferSyntax(message.GetAnswer());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	126 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	127 };
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	128
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	129 class OrthancMultiframeVolumeLoader::LoadUncompressedPixelData : public State
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	130 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	131 public:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	132 LoadUncompressedPixelData(OrthancMultiframeVolumeLoader& that) :
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	133 State(that)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	134 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	135 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	136
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	137 virtual void Handle(const OrthancStone::OrthancRestApiCommand::SuccessMessage& message)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	138 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	139 GetLoader<OrthancMultiframeVolumeLoader>().SetUncompressedPixelData(message.GetAnswer());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	140 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	141 };
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	142
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	143 const std::string& OrthancMultiframeVolumeLoader::GetInstanceId() const
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	144 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	145 if (IsActive())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	146 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	147 return instanceId_;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	148 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	149 else
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	150 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	151 LOG(ERROR) << "OrthancMultiframeVolumeLoader::GetInstanceId(): (!IsActive())";
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	152 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	153 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	154 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	155
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	156 void OrthancMultiframeVolumeLoader::ScheduleFrameDownloads()
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	157 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	158 if (transferSyntaxUid_.empty() \|\|
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	159 !volume_->HasGeometry())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	160 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	161 return;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	162 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	163 /*
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	164 1.2.840.10008.1.2 Implicit VR Endian: Default Transfer Syntax for DICOM
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	165 1.2.840.10008.1.2.1 Explicit VR Little Endian
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	166 1.2.840.10008.1.2.2 Explicit VR Big Endian
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	167
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	168 See https://www.dicomlibrary.com/dicom/transfer-syntax/
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	169 */
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	170 if (transferSyntaxUid_ == "1.2.840.10008.1.2" \|\|
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	171 transferSyntaxUid_ == "1.2.840.10008.1.2.1" \|\|
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	172 transferSyntaxUid_ == "1.2.840.10008.1.2.2")
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	173 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	174 std::unique_ptr<OrthancStone::OrthancRestApiCommand> command(new OrthancStone::OrthancRestApiCommand);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	175 command->SetHttpHeader("Accept-Encoding", "gzip");
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	176 command->SetUri("/instances/" + instanceId_ + "/content/" +
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	177 Orthanc::DICOM_TAG_PIXEL_DATA.Format() + "/0");
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	178 command->AcquirePayload(new LoadUncompressedPixelData(*this));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	179 Schedule(command.release());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	180 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	181 else
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	182 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	183 throw Orthanc::OrthancException(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	184 Orthanc::ErrorCode_NotImplemented,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	185 "No support for multiframe instances with transfer syntax: " + transferSyntaxUid_);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	186 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	187 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	188
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	189 void OrthancMultiframeVolumeLoader::SetTransferSyntax(const std::string& transferSyntax)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	190 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	191 transferSyntaxUid_ = Orthanc::Toolbox::StripSpaces(transferSyntax);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	192 ScheduleFrameDownloads();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	193 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	194
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	195 void OrthancMultiframeVolumeLoader::SetGeometry(const Orthanc::DicomMap& dicom)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	196 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	197 OrthancStone::DicomInstanceParameters parameters(dicom);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	198 volume_->SetDicomParameters(parameters);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	199
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	200 Orthanc::PixelFormat format;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	201 if (!parameters.GetImageInformation().ExtractPixelFormat(format, true))
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	202 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	203 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	204 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	205
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	206 double spacingZ;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	207 switch (parameters.GetSopClassUid())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	208 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	209 case OrthancStone::SopClassUid_RTDose:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	210 spacingZ = parameters.GetThickness();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	211 break;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	212
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	213 default:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	214 throw Orthanc::OrthancException(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	215 Orthanc::ErrorCode_NotImplemented,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	216 "No support for multiframe instances with SOP class UID: " + GetSopClassUid(dicom));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	217 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	218
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	219 const unsigned int width = parameters.GetImageInformation().GetWidth();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	220 const unsigned int height = parameters.GetImageInformation().GetHeight();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	221 const unsigned int depth = parameters.GetImageInformation().GetNumberOfFrames();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	222
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	223 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	224 OrthancStone::VolumeImageGeometry geometry;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	225 geometry.SetSizeInVoxels(width, height, depth);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	226 geometry.SetAxialGeometry(parameters.GetGeometry());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	227 geometry.SetVoxelDimensions(parameters.GetPixelSpacingX(),
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	228 parameters.GetPixelSpacingY(), spacingZ);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	229 volume_->Initialize(geometry, format, true /* Do compute range */);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	230 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	231
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	232 volume_->GetPixelData().Clear();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	233
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	234 ScheduleFrameDownloads();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	235
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	236
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	237
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	238 BroadcastMessage(OrthancStone::DicomVolumeImage::GeometryReadyMessage(*volume_));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	239 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	240
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	241
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	242 ORTHANC_FORCE_INLINE
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	243 static void CopyPixel(uint32_t& target, const void* source)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	244 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	245 // TODO - check alignement?
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	246 target = le32toh(reinterpret_cast<const uint32_t>(source));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	247 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	248
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	249 ORTHANC_FORCE_INLINE
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	250 static void CopyPixel(uint16_t& target, const void* source)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	251 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	252 // TODO - check alignement?
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	253 target = le16toh(reinterpret_cast<const uint16_t>(source));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	254 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	255
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	256 ORTHANC_FORCE_INLINE
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	257 static void CopyPixel(int16_t& target, const void* source)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	258 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	259 // byte swapping is the same for unsigned and signed integers
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	260 // (the sign bit is always stored with the MSByte)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	261 uint16_t* targetUp = reinterpret_cast<uint16_t*>(&target);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	262 CopyPixel(*targetUp, source);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	263 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	264
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	265 template <typename T>
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	266 void OrthancMultiframeVolumeLoader::CopyPixelDataAndComputeDistribution(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	267 const std::string& pixelData, std::map<T,uint64_t>& distribution)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	268 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	269 OrthancStone::ImageBuffer3D& target = volume_->GetPixelData();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	270
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	271 const unsigned int bpp = target.GetBytesPerPixel();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	272 const unsigned int width = target.GetWidth();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	273 const unsigned int height = target.GetHeight();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	274 const unsigned int depth = target.GetDepth();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	275
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	276 if (pixelData.size() != bpp * width * height * depth)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	277 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	278 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	279 "The pixel data has not the proper size");
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	280 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	281
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	282 if (pixelData.empty())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	283 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	284 return;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	285 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	286
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	287 // first pass to initialize map
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	288 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	289 const uint8_t* source = reinterpret_cast<const uint8_t*>(pixelData.c_str());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	290
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	291 for (unsigned int z = 0; z < depth; z++)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	292 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	293 for (unsigned int y = 0; y < height; y++)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	294 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	295 for (unsigned int x = 0; x < width; x++)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	296 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	297 T value;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	298 CopyPixel(value, source);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	299 distribution[value] = 0;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	300 source += bpp;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	301 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	302 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	303 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	304 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	305
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	306 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	307 const uint8_t* source = reinterpret_cast<const uint8_t*>(pixelData.c_str());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	308
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	309 for (unsigned int z = 0; z < depth; z++)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	310 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	311 OrthancStone::ImageBuffer3D::SliceWriter writer(target, OrthancStone::VolumeProjection_Axial, z);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	312
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	313 assert(writer.GetAccessor().GetWidth() == width &&
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	314 writer.GetAccessor().GetHeight() == height);
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	315 #if 0
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	316 for (unsigned int y = 0; y < height; y++)
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	317 {
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	318 assert(sizeof(T) == Orthanc::GetBytesPerPixel(target.GetFormat()));
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	319
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	320 T* target = reinterpret_cast<T*>(writer.GetAccessor().GetRow(y));
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	321
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	322 for (unsigned int x = 0; x < width; x++)
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	323 {
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	324 CopyPixel(*target, source);
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	325
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	326 distribution[*target] += 1;
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	327
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	328 target++;
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	329 source += bpp;
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	330 }
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	331 }
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	332 #else
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	333 // optimized version (fixed) as of 2020-04-15
1349 b1e6bef86955 Tentative loop optimization in CopyPixelDataAndComputeDistribution Benjamin Golinvaux <bgo@osimis.io> parents: 1337 diff changeset	334 unsigned int pitch = writer.GetAccessor().GetPitch();
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	335 T* targetAddrLine = reinterpret_cast<T*>(writer.GetAccessor().GetRow(0));
1349 b1e6bef86955 Tentative loop optimization in CopyPixelDataAndComputeDistribution Benjamin Golinvaux <bgo@osimis.io> parents: 1337 diff changeset	336 assert(sizeof(T) == Orthanc::GetBytesPerPixel(target.GetFormat()));
b1e6bef86955 Tentative loop optimization in CopyPixelDataAndComputeDistribution Benjamin Golinvaux <bgo@osimis.io> parents: 1337 diff changeset	337
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	338 for (unsigned int y = 0; y < height; y++)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	339 {
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	340 T* targetAddrPix = targetAddrLine;
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	341 for (unsigned int x = 0; x < width; x++)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	342 {
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	343 CopyPixel(*targetAddrPix, source);
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	344
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	345 distribution[*targetAddrPix] += 1;
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	346
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	347 targetAddrPix++;
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	348 source += bpp;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	349 }
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	350 uint8_t* targetAddrLineBytes = reinterpret_cast<uint8_t*>(targetAddrLine) + pitch;
104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	351 targetAddrLine = reinterpret_cast<T*>(targetAddrLineBytes);
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	352 }
1362 104e0b0f2316 Fixed the broken function, and left the unoptimized Benjamin Golinvaux <bgo@osimis.io> parents: 1349 diff changeset	353 #endif
1337 b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	354 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	355 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	356 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	357
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	358 template <typename T>
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	359 void OrthancMultiframeVolumeLoader::ComputeMinMaxWithOutlierRejection(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	360 const std::map<T, uint64_t>& distribution)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	361 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	362 if (distribution.size() == 0)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	363 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	364 LOG(ERROR) << "ComputeMinMaxWithOutlierRejection -- Volume image empty.";
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	365 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	366 else
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	367 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	368 OrthancStone::ImageBuffer3D& target = volume_->GetPixelData();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	369
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	370 const uint64_t width = target.GetWidth();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	371 const uint64_t height = target.GetHeight();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	372 const uint64_t depth = target.GetDepth();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	373 const uint64_t voxelCount = width * height * depth;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	374
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	375 // now that we have distribution[pixelValue] == numberOfPixelsWithValue
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	376 // compute number of values and check (assertion) that it is equal to
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	377 // width * height * depth
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	378 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	379 typename std::map<T, uint64_t>::const_iterator it = distribution.begin();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	380 uint64_t totalCount = 0;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	381 distributionRawMin_ = static_cast<float>(it->first);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	382
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	383 while (it != distribution.end())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	384 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	385 T pixelValue = it->first;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	386 uint64_t count = it->second;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	387 totalCount += count;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	388 it++;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	389 if (it == distribution.end())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	390 distributionRawMax_ = static_cast<float>(pixelValue);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	391 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	392 LOG(INFO) << "Volume image. First distribution value = "
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	393 << static_cast<float>(distributionRawMin_)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	394 << " \| Last distribution value = "
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	395 << static_cast<float>(distributionRawMax_);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	396
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	397 if (totalCount != voxelCount)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	398 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	399 LOG(ERROR) << "Internal error in dose distribution computation. TC ("
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	400 << totalCount << ") != VoxC (" << voxelCount;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	401 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	402 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	403 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	404
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	405 // compute the number of voxels to reject at each end of the distribution
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	406 uint64_t endRejectionCount = static_cast<uint64_t>(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	407 outliersHalfRejectionRate_ * voxelCount);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	408
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	409 if (endRejectionCount > voxelCount)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	410 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	411 LOG(ERROR) << "Internal error in dose distribution computation."
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	412 << " endRejectionCount = " << endRejectionCount
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	413 << " \| voxelCount = " << voxelCount;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	414 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	415 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	416
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	417 // this will contain the actual distribution minimum after outlier
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	418 // rejection
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	419 T resultMin = 0;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	420
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	421 // then start from start and remove pixel values up to
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	422 // endRejectionCount voxels rejected
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	423 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	424 typename std::map<T, uint64_t>::const_iterator it = distribution.begin();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	425
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	426 uint64_t currentCount = 0;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	427
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	428 while (it != distribution.end())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	429 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	430 T pixelValue = it->first;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	431 uint64_t count = it->second;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	432
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	433 // if this pixelValue crosses the rejection threshold, let's set it
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	434 // and exit the loop
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	435 if ((currentCount <= endRejectionCount) &&
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	436 (currentCount + count > endRejectionCount))
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	437 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	438 resultMin = pixelValue;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	439 break;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	440 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	441 else
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	442 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	443 currentCount += count;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	444 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	445 // and continue walking along the distribution
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	446 it++;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	447 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	448 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	449
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	450 // this will contain the actual distribution maximum after outlier
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	451 // rejection
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	452 T resultMax = 0;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	453 // now start from END and remove pixel values up to
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	454 // endRejectionCount voxels rejected
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	455 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	456 typename std::map<T, uint64_t>::const_reverse_iterator it = distribution.rbegin();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	457
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	458 uint64_t currentCount = 0;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	459
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	460 while (it != distribution.rend())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	461 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	462 T pixelValue = it->first;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	463 uint64_t count = it->second;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	464
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	465 if ((currentCount <= endRejectionCount) &&
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	466 (currentCount + count > endRejectionCount))
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	467 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	468 resultMax = pixelValue;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	469 break;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	470 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	471 else
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	472 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	473 currentCount += count;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	474 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	475 // and continue walking along the distribution
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	476 it++;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	477 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	478 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	479 if (resultMin > resultMax)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	480 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	481 LOG(ERROR) << "Internal error in dose distribution computation! " <<
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	482 "resultMin (" << resultMin << ") > resultMax (" << resultMax << ")";
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	483 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	484 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	485 computedDistributionMin_ = static_cast<float>(resultMin);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	486 computedDistributionMax_ = static_cast<float>(resultMax);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	487 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	488 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	489
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	490 template <typename T>
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	491 void OrthancMultiframeVolumeLoader::CopyPixelDataAndComputeMinMax(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	492 const std::string& pixelData)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	493 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	494 std::map<T, uint64_t> distribution;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	495 CopyPixelDataAndComputeDistribution(pixelData, distribution);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	496 ComputeMinMaxWithOutlierRejection(distribution);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	497 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	498
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	499 void OrthancMultiframeVolumeLoader::SetUncompressedPixelData(const std::string& pixelData)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	500 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	501 switch (volume_->GetPixelData().GetFormat())
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	502 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	503 case Orthanc::PixelFormat_Grayscale32:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	504 CopyPixelDataAndComputeMinMax<uint32_t>(pixelData);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	505 break;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	506 case Orthanc::PixelFormat_Grayscale16:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	507 CopyPixelDataAndComputeMinMax<uint16_t>(pixelData);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	508 break;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	509 case Orthanc::PixelFormat_SignedGrayscale16:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	510 CopyPixelDataAndComputeMinMax<int16_t>(pixelData);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	511 break;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	512 default:
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	513 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	514 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	515
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	516 volume_->IncrementRevision();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	517
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	518 pixelDataLoaded_ = true;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	519 BroadcastMessage(OrthancStone::DicomVolumeImage::ContentUpdatedMessage(*volume_));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	520 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	521
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	522 bool OrthancMultiframeVolumeLoader::HasGeometry() const
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	523 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	524 return volume_->HasGeometry();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	525 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	526
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	527 const OrthancStone::VolumeImageGeometry& OrthancMultiframeVolumeLoader::GetImageGeometry() const
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	528 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	529 return volume_->GetGeometry();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	530 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	531
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	532 OrthancMultiframeVolumeLoader::OrthancMultiframeVolumeLoader(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	533 OrthancStone::ILoadersContext& loadersContext,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	534 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	535 float outliersHalfRejectionRate)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	536 : LoaderStateMachine(loadersContext)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	537 , volume_(volume)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	538 , pixelDataLoaded_(false)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	539 , outliersHalfRejectionRate_(outliersHalfRejectionRate)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	540 , distributionRawMin_(0)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	541 , distributionRawMax_(0)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	542 , computedDistributionMin_(0)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	543 , computedDistributionMax_(0)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	544 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	545 if (volume.get() == NULL)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	546 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	547 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	548 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	549 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	550
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	551
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	552 boost::shared_ptr<OrthancMultiframeVolumeLoader>
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	553 OrthancMultiframeVolumeLoader::Create(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	554 OrthancStone::ILoadersContext& loadersContext,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	555 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	556 float outliersHalfRejectionRate /= 0.0005/)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	557 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	558 boost::shared_ptr<OrthancMultiframeVolumeLoader> obj(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	559 new OrthancMultiframeVolumeLoader(
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	560 loadersContext,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	561 volume,
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	562 outliersHalfRejectionRate));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	563 obj->LoaderStateMachine::PostConstructor();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	564 return obj;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	565 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	566
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	567 OrthancMultiframeVolumeLoader::~OrthancMultiframeVolumeLoader()
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	568 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	569 LOG(TRACE) << "OrthancMultiframeVolumeLoader::~OrthancMultiframeVolumeLoader()";
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	570 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	571
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	572 void OrthancMultiframeVolumeLoader::GetDistributionMinMax
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	573 (float& minValue, float& maxValue) const
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	574 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	575 if (distributionRawMin_ == 0 && distributionRawMax_ == 0)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	576 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	577 LOG(WARNING) << "GetDistributionMinMaxWithOutliersRejection called before computation!";
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	578 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	579 minValue = distributionRawMin_;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	580 maxValue = distributionRawMax_;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	581 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	582
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	583 void OrthancMultiframeVolumeLoader::GetDistributionMinMaxWithOutliersRejection
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	584 (float& minValue, float& maxValue) const
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	585 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	586 if (computedDistributionMin_ == 0 && computedDistributionMax_ == 0)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	587 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	588 LOG(WARNING) << "GetDistributionMinMaxWithOutliersRejection called before computation!";
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	589 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	590 minValue = computedDistributionMin_;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	591 maxValue = computedDistributionMax_;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	592 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	593
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	594 void OrthancMultiframeVolumeLoader::LoadInstance(const std::string& instanceId)
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	595 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	596 Start();
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	597
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	598 instanceId_ = instanceId;
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	599
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	600 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	601 std::unique_ptr<OrthancStone::OrthancRestApiCommand> command(new OrthancStone::OrthancRestApiCommand);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	602 command->SetHttpHeader("Accept-Encoding", "gzip");
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	603 command->SetUri("/instances/" + instanceId + "/tags");
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	604 command->AcquirePayload(new LoadGeometry(*this));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	605 Schedule(command.release());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	606 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	607
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	608 {
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	609 std::unique_ptr<OrthancStone::OrthancRestApiCommand> command(new OrthancStone::OrthancRestApiCommand);
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	610 command->SetUri("/instances/" + instanceId + "/metadata/TransferSyntax");
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	611 command->AcquirePayload(new LoadTransferSyntax(*this));
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	612 Schedule(command.release());
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	613 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	614 }
b1396be5aa27 Moved the fixed loaders back from the dead Benjamin Golinvaux <bgo@osimis.io> parents: diff changeset	615 }

Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Loaders/OrthancMultiframeVolumeLoader.cpp @ 1543:4cfdaf4ef3fe