Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Oracle/GenericOracleRunner.cpp @ 1619:4c9e68291467
Added code to remove the wheel callback in dtor, to prevent access to dead object
author | Benjamin Golinvaux <bgo@osimis.io> |
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date | Mon, 02 Nov 2020 17:55:35 +0100 |
parents | 8563ea5d8ae4 |
children | 59f95b9ea858 |
rev | line source |
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1077 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
1077 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
1077 | 9 * as published by the Free Software Foundation, either version 3 of |
10 * the License, or (at your option) any later version. | |
11 * | |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * Lesser General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
1077 | 20 **/ |
21 | |
22 | |
23 #include "GenericOracleRunner.h" | |
24 | |
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25 #if !defined(ORTHANC_ENABLE_DCMTK) |
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26 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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27 #endif |
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28 |
1077 | 29 #include "GetOrthancImageCommand.h" |
30 #include "GetOrthancWebViewerJpegCommand.h" | |
31 #include "HttpCommand.h" | |
32 #include "OracleCommandExceptionMessage.h" | |
33 #include "OrthancRestApiCommand.h" | |
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34 #include "ParseDicomFromFileCommand.h" |
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35 #include "ParseDicomFromWadoCommand.h" |
1104 | 36 #include "ReadFileCommand.h" |
1077 | 37 |
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38 #if ORTHANC_ENABLE_DCMTK == 1 |
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39 # include "ParseDicomSuccessMessage.h" |
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40 # include <dcmtk/dcmdata/dcdeftag.h> |
1153 | 41 # include <dcmtk/dcmdata/dcfilefo.h> |
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42 static unsigned int BUCKET_DICOMDIR = 0; |
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43 static unsigned int BUCKET_SOP = 1; |
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44 #endif |
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45 |
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46 #include <Compression/GzipCompressor.h> |
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47 #include <HttpClient.h> |
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48 #include <OrthancException.h> |
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49 #include <Toolbox.h> |
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50 #include <SystemToolbox.h> |
1104 | 51 |
52 #include <boost/filesystem.hpp> | |
1077 | 53 |
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54 |
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55 |
1077 | 56 namespace OrthancStone |
57 { | |
58 static void CopyHttpHeaders(Orthanc::HttpClient& client, | |
59 const Orthanc::HttpClient::HttpHeaders& headers) | |
60 { | |
61 for (Orthanc::HttpClient::HttpHeaders::const_iterator | |
1571 | 62 it = headers.begin(); it != headers.end(); ++it ) |
1077 | 63 { |
64 client.AddHeader(it->first, it->second); | |
65 } | |
66 } | |
67 | |
68 | |
69 static void DecodeAnswer(std::string& answer, | |
70 const Orthanc::HttpClient::HttpHeaders& headers) | |
71 { | |
72 Orthanc::HttpCompression contentEncoding = Orthanc::HttpCompression_None; | |
73 | |
74 for (Orthanc::HttpClient::HttpHeaders::const_iterator it = headers.begin(); | |
75 it != headers.end(); ++it) | |
76 { | |
77 std::string s; | |
78 Orthanc::Toolbox::ToLowerCase(s, it->first); | |
79 | |
80 if (s == "content-encoding") | |
81 { | |
82 if (it->second == "gzip") | |
83 { | |
84 contentEncoding = Orthanc::HttpCompression_Gzip; | |
85 } | |
86 else | |
87 { | |
88 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, | |
89 "Unsupported HTTP Content-Encoding: " + it->second); | |
90 } | |
91 | |
92 break; | |
93 } | |
94 } | |
95 | |
96 if (contentEncoding == Orthanc::HttpCompression_Gzip) | |
97 { | |
98 std::string compressed; | |
99 answer.swap(compressed); | |
100 | |
101 Orthanc::GzipCompressor compressor; | |
102 compressor.Uncompress(answer, compressed.c_str(), compressed.size()); | |
103 | |
104 LOG(INFO) << "Uncompressing gzip Encoding: from " << compressed.size() | |
105 << " to " << answer.size() << " bytes"; | |
106 } | |
107 } | |
108 | |
109 | |
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110 static void RunHttpCommand(std::string& answer, |
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111 Orthanc::HttpClient::HttpHeaders& answerHeaders, |
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112 const HttpCommand& command) |
1077 | 113 { |
114 Orthanc::HttpClient client; | |
115 client.SetUrl(command.GetUrl()); | |
116 client.SetMethod(command.GetMethod()); | |
117 client.SetTimeout(command.GetTimeout()); | |
118 | |
119 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
120 | |
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121 if (command.HasCredentials()) |
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122 { |
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123 client.SetCredentials(command.GetUsername().c_str(), command.GetPassword().c_str()); |
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124 } |
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125 |
1077 | 126 if (command.GetMethod() == Orthanc::HttpMethod_Post || |
127 command.GetMethod() == Orthanc::HttpMethod_Put) | |
128 { | |
129 client.SetBody(command.GetBody()); | |
130 } | |
131 | |
132 client.ApplyAndThrowException(answer, answerHeaders); | |
133 DecodeAnswer(answer, answerHeaders); | |
134 } | |
135 | |
136 | |
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137 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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138 IMessageEmitter& emitter, |
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139 const HttpCommand& command) |
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140 { |
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141 std::string answer; |
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142 Orthanc::HttpClient::HttpHeaders answerHeaders; |
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143 RunHttpCommand(answer, answerHeaders, command); |
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144 |
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145 HttpCommand::SuccessMessage message(command, answerHeaders, answer); |
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146 emitter.EmitMessage(receiver, message); |
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147 } |
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148 |
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149 |
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150 static void RunOrthancRestApiCommand(std::string& answer, |
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151 Orthanc::HttpClient::HttpHeaders& answerHeaders, |
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152 const Orthanc::WebServiceParameters& orthanc, |
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153 const OrthancRestApiCommand& command) |
1077 | 154 { |
155 Orthanc::HttpClient client(orthanc, command.GetUri()); | |
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156 client.SetRedirectionFollowed(false); |
1077 | 157 client.SetMethod(command.GetMethod()); |
158 client.SetTimeout(command.GetTimeout()); | |
159 | |
160 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
161 | |
162 if (command.GetMethod() == Orthanc::HttpMethod_Post || | |
163 command.GetMethod() == Orthanc::HttpMethod_Put) | |
164 { | |
165 client.SetBody(command.GetBody()); | |
166 } | |
167 | |
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168 client.ApplyAndThrowException(answer, answerHeaders); |
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169 DecodeAnswer(answer, answerHeaders); |
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170 } |
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171 |
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172 |
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173 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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174 IMessageEmitter& emitter, |
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175 const Orthanc::WebServiceParameters& orthanc, |
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176 const OrthancRestApiCommand& command) |
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177 { |
1077 | 178 std::string answer; |
179 Orthanc::HttpClient::HttpHeaders answerHeaders; | |
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180 RunOrthancRestApiCommand(answer, answerHeaders, orthanc, command); |
1077 | 181 |
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182 OrthancRestApiCommand::SuccessMessage message(command, answerHeaders, answer); |
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183 emitter.EmitMessage(receiver, message); |
1077 | 184 } |
185 | |
186 | |
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187 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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188 IMessageEmitter& emitter, |
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189 const Orthanc::WebServiceParameters& orthanc, |
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190 const GetOrthancImageCommand& command) |
1077 | 191 { |
192 Orthanc::HttpClient client(orthanc, command.GetUri()); | |
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193 client.SetRedirectionFollowed(false); |
1077 | 194 client.SetTimeout(command.GetTimeout()); |
195 | |
196 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
197 | |
198 std::string answer; | |
199 Orthanc::HttpClient::HttpHeaders answerHeaders; | |
200 client.ApplyAndThrowException(answer, answerHeaders); | |
201 | |
202 DecodeAnswer(answer, answerHeaders); | |
203 | |
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204 command.ProcessHttpAnswer(receiver, emitter, answer, answerHeaders); |
1077 | 205 } |
206 | |
207 | |
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208 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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209 IMessageEmitter& emitter, |
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210 const Orthanc::WebServiceParameters& orthanc, |
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211 const GetOrthancWebViewerJpegCommand& command) |
1077 | 212 { |
213 Orthanc::HttpClient client(orthanc, command.GetUri()); | |
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214 client.SetRedirectionFollowed(false); |
1077 | 215 client.SetTimeout(command.GetTimeout()); |
216 | |
217 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
218 | |
219 std::string answer; | |
220 Orthanc::HttpClient::HttpHeaders answerHeaders; | |
221 client.ApplyAndThrowException(answer, answerHeaders); | |
222 | |
223 DecodeAnswer(answer, answerHeaders); | |
224 | |
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225 command.ProcessHttpAnswer(receiver, emitter, answer); |
1077 | 226 } |
227 | |
228 | |
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229 static std::string GetPath(const std::string& root, |
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230 const std::string& file) |
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231 { |
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232 boost::filesystem::path a(root); |
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233 boost::filesystem::path b(file); |
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234 |
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235 boost::filesystem::path c; |
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236 if (b.is_absolute()) |
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237 { |
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238 c = b; |
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239 } |
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240 else |
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241 { |
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242 c = a / b; |
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243 } |
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244 |
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245 return c.string(); |
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246 } |
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247 |
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248 |
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249 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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250 IMessageEmitter& emitter, |
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251 const std::string& root, |
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252 const ReadFileCommand& command) |
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254 std::string path = GetPath(root, command.GetPath()); |
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255 LOG(TRACE) << "Oracle reading file: " << path; |
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256 |
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257 std::string content; |
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258 Orthanc::SystemToolbox::ReadFile(content, path, true /* log */); |
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259 |
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260 ReadFileCommand::SuccessMessage message(command, content); |
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261 emitter.EmitMessage(receiver, message); |
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262 } |
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263 |
1104 | 264 |
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265 #if ORTHANC_ENABLE_DCMTK == 1 |
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266 static Orthanc::ParsedDicomFile* ParseDicom(uint64_t& fileSize, /* OUT */ |
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267 const std::string& path, |
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268 bool isPixelData) |
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269 { |
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270 if (!Orthanc::SystemToolbox::IsRegularFile(path)) |
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271 { |
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272 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentFile); |
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273 } |
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274 |
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275 LOG(TRACE) << "Parsing DICOM file, " << (isPixelData ? "with" : "without") |
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276 << " pixel data: " << path; |
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277 |
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278 boost::posix_time::ptime start = boost::posix_time::microsec_clock::local_time(); |
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279 |
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280 fileSize = Orthanc::SystemToolbox::GetFileSize(path); |
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281 |
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282 // Check for 32bit systems |
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283 if (fileSize != static_cast<uint64_t>(static_cast<size_t>(fileSize))) |
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285 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotEnoughMemory); |
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286 } |
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287 |
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288 DcmFileFormat dicom; |
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289 bool ok; |
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290 |
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291 if (isPixelData) |
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292 { |
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293 ok = dicom.loadFile(path.c_str()).good(); |
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294 } |
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295 else |
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296 { |
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297 #if DCMTK_VERSION_NUMBER >= 362 |
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298 /** |
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299 * NB : We could stop at (0x3007, 0x0000) instead of |
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300 * DCM_PixelData as the Stone framework does not use further |
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301 * tags (cf. the Orthanc::DICOM_TAG_* constants), but we still |
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302 * use "PixelData" as this does not change the runtime much, and |
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303 * as it is more explicit. |
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304 **/ |
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305 static const DcmTagKey STOP = DCM_PixelData; |
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306 //static const DcmTagKey STOP(0x3007, 0x0000); |
1148 | 307 |
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308 ok = dicom.loadFileUntilTag(path.c_str(), EXS_Unknown, EGL_noChange, |
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309 DCM_MaxReadLength, ERM_autoDetect, STOP).good(); |
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310 #else |
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311 // The primitive "loadFileUntilTag" was introduced in DCMTK 3.6.2 |
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312 ok = dicom.loadFile(path.c_str()).good(); |
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313 #endif |
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314 } |
1104 | 315 |
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316 if (ok) |
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317 { |
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318 std::unique_ptr<Orthanc::ParsedDicomFile> result(new Orthanc::ParsedDicomFile(dicom)); |
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319 |
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320 boost::posix_time::ptime end = boost::posix_time::microsec_clock::local_time(); |
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321 LOG(TRACE) << path << ": parsed in " << (end-start).total_milliseconds() << " ms"; |
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322 |
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323 return result.release(); |
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324 } |
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325 else |
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326 { |
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327 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
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328 "Cannot parse file: " + path); |
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329 } |
1104 | 330 } |
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331 |
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332 |
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333 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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334 IMessageEmitter& emitter, |
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336 const std::string& root, |
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337 const ParseDicomFromFileCommand& command) |
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338 { |
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339 const std::string path = GetPath(root, command.GetPath()); |
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340 |
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341 if (cache) |
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342 { |
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343 ParsedDicomCache::Reader reader(*cache, BUCKET_DICOMDIR, path); |
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344 if (reader.IsValid() && |
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345 (!command.IsPixelDataIncluded() || |
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346 reader.HasPixelData())) |
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347 { |
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348 // Reuse the DICOM file from the cache |
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349 ParseDicomSuccessMessage message(command, command.GetSource(), reader.GetDicom(), |
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350 reader.GetFileSize(), reader.HasPixelData()); |
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351 emitter.EmitMessage(receiver, message); |
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352 return; |
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353 } |
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354 } |
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355 |
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356 uint64_t fileSize; |
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357 std::unique_ptr<Orthanc::ParsedDicomFile> parsed(ParseDicom(fileSize, path, command.IsPixelDataIncluded())); |
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358 |
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359 if (fileSize != static_cast<size_t>(fileSize)) |
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360 { |
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361 // Cannot load such a large file on 32-bit architecture |
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362 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotEnoughMemory); |
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363 } |
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364 |
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365 { |
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366 ParseDicomSuccessMessage message |
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367 (command, command.GetSource(), *parsed, |
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368 static_cast<size_t>(fileSize), command.IsPixelDataIncluded()); |
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369 emitter.EmitMessage(receiver, message); |
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370 } |
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371 |
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372 if (cache) |
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373 { |
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374 // Store it into the cache for future use |
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375 |
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376 // Invalidate to overwrite DICOM instance that would already |
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377 // be stored without pixel data |
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378 cache->Invalidate(BUCKET_DICOMDIR, path); |
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379 |
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380 cache->Acquire(BUCKET_DICOMDIR, path, parsed.release(), |
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381 static_cast<size_t>(fileSize), command.IsPixelDataIncluded()); |
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382 } |
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383 } |
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384 |
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385 |
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386 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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387 IMessageEmitter& emitter, |
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388 boost::shared_ptr<ParsedDicomCache> cache, |
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389 const Orthanc::WebServiceParameters& orthanc, |
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390 const ParseDicomFromWadoCommand& command) |
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391 { |
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392 if (cache) |
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393 { |
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394 ParsedDicomCache::Reader reader(*cache, BUCKET_SOP, command.GetSopInstanceUid()); |
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395 if (reader.IsValid() && |
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396 reader.HasPixelData()) |
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397 { |
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398 // Reuse the DICOM file from the cache |
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399 ParseDicomSuccessMessage message(command, command.GetSource(), reader.GetDicom(), |
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400 reader.GetFileSize(), reader.HasPixelData()); |
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401 emitter.EmitMessage(receiver, message); |
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402 return; |
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403 } |
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404 } |
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405 |
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406 std::string answer; |
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407 Orthanc::HttpClient::HttpHeaders answerHeaders; |
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408 |
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409 switch (command.GetRestCommand().GetType()) |
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410 { |
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411 case IOracleCommand::Type_Http: |
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412 RunHttpCommand(answer, answerHeaders, dynamic_cast<const HttpCommand&>(command.GetRestCommand())); |
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413 break; |
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414 |
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415 case IOracleCommand::Type_OrthancRestApi: |
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416 RunOrthancRestApiCommand(answer, answerHeaders, orthanc, |
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417 dynamic_cast<const OrthancRestApiCommand&>(command.GetRestCommand())); |
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418 break; |
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419 |
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420 default: |
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421 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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422 } |
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423 |
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424 size_t fileSize; |
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425 std::unique_ptr<Orthanc::ParsedDicomFile> parsed(ParseDicomSuccessMessage::ParseWadoAnswer(fileSize, answer, answerHeaders)); |
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426 |
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427 { |
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428 ParseDicomSuccessMessage message(command, command.GetSource(), *parsed, fileSize, |
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429 true /* pixel data always is included in WADO-RS */); |
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430 emitter.EmitMessage(receiver, message); |
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431 } |
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432 |
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433 if (cache) |
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434 { |
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435 // Store it into the cache for future use |
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436 cache->Acquire(BUCKET_SOP, command.GetSopInstanceUid(), parsed.release(), fileSize, true); |
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437 } |
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438 } |
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439 #endif |
1104 | 440 |
441 | |
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442 void GenericOracleRunner::Run(boost::weak_ptr<IObserver> receiver, |
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443 IMessageEmitter& emitter, |
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444 const IOracleCommand& command) |
1077 | 445 { |
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446 Orthanc::ErrorCode error = Orthanc::ErrorCode_Success; |
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447 |
1077 | 448 try |
449 { | |
450 switch (command.GetType()) | |
451 { | |
452 case IOracleCommand::Type_Sleep: | |
453 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadParameterType, | |
454 "Sleep command cannot be executed by the runner"); | |
455 | |
456 case IOracleCommand::Type_Http: | |
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457 RunInternal(receiver, emitter, dynamic_cast<const HttpCommand&>(command)); |
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458 break; |
1077 | 459 |
460 case IOracleCommand::Type_OrthancRestApi: | |
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461 RunInternal(receiver, emitter, orthanc_, |
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462 dynamic_cast<const OrthancRestApiCommand&>(command)); |
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463 break; |
1077 | 464 |
465 case IOracleCommand::Type_GetOrthancImage: | |
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466 RunInternal(receiver, emitter, orthanc_, |
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467 dynamic_cast<const GetOrthancImageCommand&>(command)); |
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468 break; |
1077 | 469 |
470 case IOracleCommand::Type_GetOrthancWebViewerJpeg: | |
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471 RunInternal(receiver, emitter, orthanc_, |
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472 dynamic_cast<const GetOrthancWebViewerJpegCommand&>(command)); |
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473 break; |
1077 | 474 |
1104 | 475 case IOracleCommand::Type_ReadFile: |
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476 RunInternal(receiver, emitter, rootDirectory_, |
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477 dynamic_cast<const ReadFileCommand&>(command)); |
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478 break; |
1104 | 479 |
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480 case IOracleCommand::Type_ParseDicomFromFile: |
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481 case IOracleCommand::Type_ParseDicomFromWado: |
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482 #if ORTHANC_ENABLE_DCMTK == 1 |
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483 switch (command.GetType()) |
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484 { |
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485 case IOracleCommand::Type_ParseDicomFromFile: |
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486 RunInternal(receiver, emitter, dicomCache_, rootDirectory_, |
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487 dynamic_cast<const ParseDicomFromFileCommand&>(command)); |
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488 break; |
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489 |
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490 case IOracleCommand::Type_ParseDicomFromWado: |
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491 RunInternal(receiver, emitter, dicomCache_, orthanc_, |
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492 dynamic_cast<const ParseDicomFromWadoCommand&>(command)); |
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493 break; |
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494 |
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495 default: |
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496 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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497 } |
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498 break; |
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499 #else |
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500 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, |
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501 "DCMTK must be enabled to parse DICOM files"); |
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502 #endif |
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503 |
1077 | 504 default: |
505 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
506 } | |
507 } | |
508 catch (Orthanc::OrthancException& e) | |
509 { | |
510 LOG(ERROR) << "Exception within the oracle: " << e.What(); | |
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511 error = e.GetErrorCode(); |
1077 | 512 } |
513 catch (...) | |
514 { | |
515 LOG(ERROR) << "Threaded exception within the oracle"; | |
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516 error = Orthanc::ErrorCode_InternalError; |
1077 | 517 } |
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518 |
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519 if (error != Orthanc::ErrorCode_Success) |
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520 { |
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521 OracleCommandExceptionMessage message(command, error); |
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522 emitter.EmitMessage(receiver, message); |
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523 } |
1077 | 524 } |
525 } |