annotate OrthancStone/Resources/Documentation/stone-object-model-reference.md @ 2034:4b24b7533346 deep-learning

cont
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 27 Jan 2023 15:43:24 +0100
parents b5417e377636
children
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1 ## Scene2D and viewport-related object reference
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2
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3 ### `Scene2D`
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4
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5 Represents a collection of layers that display 2D data.
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6
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7 These layers must implement `ISceneLayer`
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8
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9 The layers must be created externally and set to a specific Z-order index
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10 with the `SetLayer` method.
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11
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12 The `Scene2D` object merely acts as a layer container. It has no rendering
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13 or layer creation facility on its own.
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14
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15 The `Scene2D` contains an `AffineTransform2D` structure that defines how
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16 the various layer item coordinates are transformed before being displayed
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17 on the viewport (aka canvas)
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18
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19 It is up to each layer type-specific renderer to choose how this transformation
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20 is used. See the various kinds of layer below for more details.
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22 Examining the `Scene2D` contents can be done either by implementing the
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23 `Scene2D::IVisitor` interface and calling `Apply(IVisitor& visitor)` or by
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24 iterating between `GetMinDepth()` and `GetMaxDepth()` and calling the
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25 `ISceneLayer& GetLayer(int depth)` getter.
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26
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27 ### `ISceneLayer`
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28
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29 Interface that must be implemented by `Scene2D` layers. This is a closed list
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30 that, as of 2020-03, contains:
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31
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32 ```
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33 Type_InfoPanel,
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34 Type_ColorTexture,
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35 Type_Polyline,
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36 Type_Text,
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37 Type_FloatTexture,
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38 Type_LookupTableTexture
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39 ```
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40
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41 Please note that this interface mandates the implementation of a `GetRevision`
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42 method returning an `uint64_t`.
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43
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44 The idea is that when a model gets converted to a set of `ISceneLayer`
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45 instances, changes in the model that result in changes to the layers must
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46 increase the revision number of these layers.
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47
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48 That allows the rendering process to safely assume that a given layers whose
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49 revision does not change hasn't been modified (this helps with caching).
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50
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51 Every mutable method in `ISceneLayer` instances that possibly change the visual
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52 representation of an `ISceneLayer` must increase this revision number.
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53
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54 ### Implementation: `FloatTextureSceneLayer`
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56 Layer that renders an `Orthanc::ImageAccessor` object that must be convertible
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57 to `Float32` image.
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58
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59 The constructor only uses the image accessor to perform a copy. It can safely
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60 be deleted afterwards.
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61
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62 The input values are mapped to the output values by taking into account various
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63 properties that can be modified with:
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64
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65 - `SetWindowing`: uses windowing presets like "bone" or "lung"
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66 - `SetCustomWindowing`: with manual window center and width
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67 - `SetInverted`: toggles black <-> white inversion after windowing
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68 - `SetApplyLog`: uses a non-linear response curve described in
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69 https://theailearner.com/2019/01/01/log-transformation/ that expands contrast
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70 in dark areas while compressing contrast in bright ones. This is **not**
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71 implemented in the OpenGL renderer!
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72
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73 The corresponding renderers are `OpenGLFloatTextureRenderer` and
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74 `CairoFloatTextureRenderer`. The scene transformation is applied during
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75 rendering.
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76
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77 ### Implementation: `ColorTextureSceneLayer`
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78
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79 Layer that renders an `Orthanc::ImageAccessor` object an RGBA image (alpha must
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80 be premultiplied).
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81
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82 The constructor only uses the image accessor to perform a copy. It can safely
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83 be deleted afterwards.
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84
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85 The corresponding renderers are `OpenGLColorTextureRenderer` and
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86 `CairoColorTextureRenderer`. The scene transformation is applied during
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87 rendering.
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88
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89 ### Implementation: `LookupTableTextureSceneLayer`
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90
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91 Layer that renders an `Orthanc::ImageAccessor` object that must be convertible
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92 to `Float32` image.
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93
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94 The constructor only uses the image accessor to perform a copy. It can safely
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95 be deleted afterwards.
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96
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97 The final on-screen color of each pixel is determined by passing the input
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98 `Float32` value through a 256-entry look-up table (LUT) that can be passed as
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99 an array of either 256 x 3 bytes (for opaque RGB colors) or 256 x 4 bytes (for
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100 RGBA pixels). The LUT is not specified at construction time, but with
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101 calls to `SetLookupTable` or `SetLookupTableGrayscale` (that fills the LUT
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102 with a gradient from black to white, fully opaque)
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103
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104 The range of input values that is mapped to the entirety of the LUT is, by
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105 default, the full image range, but can be customized with `SetRange`.
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106
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107 The corresponding renderers are `OpenGLLookupTableTextureRenderer` and
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108 `CairoLookupTableTextureRenderer`. The scene transformation is applied during
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109 rendering.
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110
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111 ### Implementation: `PolylineSceneLayer`
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112
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113 Layer that renders vector-based polygonal lines.
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114
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115 Polylines can be added with the `AddChain` method, that accepts a `Chain`, that
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116 is a typedef to `std::vector<ScenePoint2D>`, a flag to specify whether the
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117 chain must be automatically close (last point of the vector connected to the
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118 first one) and the chain color (a `Color` structure).
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119
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120 Please note that the line thickness is, contrary to the color, specified
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121 per-chain but rather per-layer.
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122
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123 If you need multiple line thicknesses, multiple `PolylineSceneLayer` must be
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124 created.
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125
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126 The corresponding renderers are `OpenGLAdvancedPolylineRenderer` and
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127 `CairoPolylineRenderer`. The scene transformation is applied during
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128 rendering.
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129
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130 ### Implementation: `TextSceneLayer`
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131
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132 This layers renders a paragraph of text.
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133
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134 The inputs to the layer can be changed after creation and are:
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135 - The text iself, supplied as an UTF-8 encoded string in `SetText`
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136 - The font used for rendering, set by `SetFontIndex`.
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137 - The text anchoring, through `SetAnchor`: the text can be anchored to
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138 various positions, such as top lef, center, bottom center,... These
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139 various anchors are part of the `BitmapAnchor` enumeration.
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140 - The text position, relative to its anchor, through `SetPosition`.
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141
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142 The font is supplied as an index. This is an index in the set of fonts
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143 that has been registered in the viewport compositor. The following code
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144 shows how to set such a font:
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145
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146 ```
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147 std::unique_ptr<OrthancStone::IViewport::ILock> lock(viewport_.Lock());
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148 lock->GetCompositor().SetFont(0,
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149 Orthanc::EmbeddedResources::UBUNTU_FONT,
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150 32, Orthanc::Encoding_Latin1);
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151 // where 32 is the font size in pixels
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152 ```
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153
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154 This call uses the embedded `UBUNTU_FONT` resource that has been defined in
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155 the `CMakeLists.txt` file with:
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156
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157 ```
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158 EmbedResources(
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159 UBUNTU_FONT ${CMAKE_BINARY_DIR}/ubuntu-font-family-0.83/Ubuntu-R.ttf
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160 )
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161 ```
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162
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163 Please note that you must supply a font: there is no default font provided by
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164 the OpenGL or Cairo compositors.
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165
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166 The corresponding renderers are `OpenGLTextRenderer` and
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167 `CairoTextRenderer`. The scene transformation is not applied during rendering,
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168 because the text anchoring, position and scaling are computed relative to the
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169 viewport/canvas.
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170
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171 ### Implementation: `InfoPanelSceneLayer`
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172
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173 This layer is designed to display an image, supplied through an
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174 `Orthanc::ImageAccessor` reference (only used at construction time).
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175
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176 The image is not transformed according to the normal layer transformation but
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177 is rather positioned relative to the canvas, with the same mechanism as the
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178 `TextSceneLayer` described above.
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179
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180 The image position is specified with the sole means of the `SetAnchor` method.
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181
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182 The corresponding renderers are `OpenGLInfoPanelRenderer` and
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183 `CairoInfoPanelRenderer`.
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184
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185 ### `IViewport`
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186
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187 https://bitbucket.org/sjodogne/orthanc-stone/src/broker/Framework/Viewport/IViewport.h
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188
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189 (**not** the one in `Deprecated`)
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190 - Implemented by classes that:
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191 - manage the on-screen display of a `Scene2D` trough a compositor.
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192 - Own the `ICompositor` object that performs the rendering.
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193 - Own the `Scene2D` (TODO: currently through `ViewportController` --> `Scene2D`)
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194 - Provide a `Lock` method that returns a RAII, that must be kept alive when
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195 modifying the underlying objects (controller, compositor, scene), but not
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196 longer.
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197
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198 #### Implementation: `SdlOpenGLViewport`
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199 - Implementation of a viewport rendered on a SDL window, that uses OpenGL for
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200 rendering.
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201 - Instantiating this object creates an SDL window. Automatic scaling for hiDPI
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202 displays can be toggled on or off.
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203
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204 #### Implementation: `WebGLViewport`
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205 - Implementation of a viewport rendered on a DOM canvas, that uses OpenGL for
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206 rendering.
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207 - Contrary to the SDL OpenGL viewport, the canvas must already be existing
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208 when the ctor is called.
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209
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210 ### `ICompositor`
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211 The interface providing a rendering service for `Scene2D` objects.
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212
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213 **Subclasses:** `CairoCompositor`, `OpenGLCompositor`
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214
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215 You do not need to create compositor instances. They are created for you when
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216 instantiating a viewport.
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217
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218 ### `ViewportController`
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219 This concrete class is instantiated by its `IViewport` owner.
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220
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221 **TODO:** its functionality is not well defined and should be moved into the
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222 viewport base class. Support for measuring tools should be moved to a special
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223 interactor.
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224
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225 - contains:
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226 - array of `MeasureTool`
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227 - ref to `IViewport`
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228 - `activeTracker_`
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229 - owns a `Scene2D`
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230 - weak ref to `UndoStack`
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231 - cached `canvasToSceneFactor_`
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232
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233 - contains logic to:
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234 - pass commands to undostack (trivial)
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235 - logic to locate `MeasureTool` in the HitTest
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236 - OTOH, the meat of the measuring tool logic (highlighting etc..) is
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237 done in app-specific code (`VolumeSlicerWidget`)
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238 - accept new Scene transform and notify listeners
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239 - **the code that uses the interactor** (`HandleMousePress`) is only
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240 called by the new `WebAssemblyViewport` !!! **TODO** clean this mess
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241
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242 ### `IViewportInteractor`
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243 - must provide logic to respond to `CreateTracker`
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244
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245 ### `DefaultViewportInteractor`
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246 - provides Pan+Rotate+Zoom trackers
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247
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248 ### `WebGLViewportsRegistry`
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249
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250 This class is a singleton (accessible through `GetWebGLViewportsRegistry()`
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251 that deals with context losses in the WebGL contexts.
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252
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253 You use it by creating a WebGLViewport in the following fashion:
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254
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255 ```
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256 boost::shared_ptr<OrthancStone::WebGLViewport> viewport(
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257 OrthancStone::GetWebGLViewportsRegistry().Add(canvasId));
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258 ```
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259
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260 ## Source data related
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261
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262 ### `IVolumeSlicer`
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263
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264 A very simple interface with a single method:
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265 `IVolumeSlicer::IExtractedSlice* ExtractSlice(const CoordinateSystem3D& cuttingPlane)`
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266
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267 ### `IVolumeSlicer::IExtractedSlice`
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268
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269 On a slice has been extracted from a volume by an `IVolumeSlicer`, it can
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270 report its *revision number*.
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271
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272 If another call to `ExtractSlice` with the same cutting plane is made, but
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273 the returned slice revision is different, it means that the volume has
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274 changed and the scene layer must be refreshed.
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275
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276 Please see `VolumeSceneLayerSource::Update` to check how this logic is
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277 implemented.
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278
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279
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280 ### `OrthancSeriesVolumeProgressiveLoader`
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281
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282 This class implements `IVolumeSlicer` (and `IObservable`) and can be used to
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283 load a volume stored in a Dicom series on an Orthanc server.
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284
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285 Over the course of the series loading, various notifications are sent:
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286
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287 The first one is `OrthancStone::DicomVolumeImage::GeometryReadyMessage` that
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288 is sent when the volume extent and geometric properties are known.
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289
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290 Then, as slices get loaded and the volume is filled,
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291 `OrthancStone::DicomVolumeImage::ContentUpdatedMessage` are sent.
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292
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293 Once all the highest-quality slices have been loaded, the
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294 `OrthancSeriesVolumeProgressiveLoader::VolumeImageReadyInHighQuality`
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295 notification is sent.
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296
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297 Please note that calling `ExtractSlice` *before* the geometry is loaded will
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298 yield an instance of `InvalidSlice` that cannot be used to create a layer.
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299
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300 On the other hand,
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301
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302 ### `VolumeSceneLayerSource`
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303
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304 This class makes the bridge between a volume (supplied by an `IVolumeSlicer`
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305 interface) and a `Scene2D`.
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306
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307 Please note that the bulk of the work is done the objects implementing
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308 `IVolumeSlicer` and this object merely connects things together.
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309
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310 For instance, deciding whether an image (texture) or vector (polyline) layer
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311 is done by the `IVolumeSlicer` implementation.
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312
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313 - contains:
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314 - reference to Scene2D
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315 - `layerIndex_` (fixed at ctor) that is the index, in the Scene2D layer
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316 stack, of the layer that will be created/updated
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317 - `IVolumeSlicer`
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318
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319 - contains logic to:
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320 - extract a slice from the slicer and set/refresh the Scene2D layer at
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321 the supplied `layerIndex_`
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322 - refresh this based on the slice revision or configuration revision
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323 - accept a configuration that will be applied to the layer
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324 - the `Update()` method will
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325
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326 ## Updates and the configurators
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327
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328 `ISceneLayer` does not expose mutable methods.
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329
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330 The way to change a layer once it has been created is through configurator
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331 objets.
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332
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333 If you plan to set (even only once) or modify some layer properties after
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334 layer creation, you need to create a matching configurator objet.
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335
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336 For instance, in the `VolumeSceneLayerSource`, the `SetConfigurator` method
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337 will store a `ILayerStyleConfigurator* configurator_`.
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338
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339 In the `OrthancView` ctor, you can see how it is used:
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340
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341 ```
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342 std::unique_ptr<GrayscaleStyleConfigurator> style(
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343 new GrayscaleStyleConfigurator);
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344
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345 style->SetLinearInterpolation(true);
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346
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347 ...<some more code>...
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348
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349 std::unique_ptr<LookupTableStyleConfigurator> config(
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350 new LookupTableStyleConfigurator);
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351
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352 config->SetLookupTable(Orthanc::EmbeddedResources::COLORMAP_HOT);
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353
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354 ```
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355
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356 The configurator type are created according to the type of layer.ΒΈ
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357
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358 Later, in `VolumeSceneLayerSource::Update(const CoordinateSystem3D& plane)`,
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359 if the cutting plane has **not** changed and if the layer revision has **not**
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360 changed, we test `configurator_->GetRevision() != lastConfiguratorRevision_`
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361 and, if different, we call `configurator_->ApplyStyle(scene_.GetLayer(layerDepth_));`
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362
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363 This allows to change layer properties that do not depend on the layer model
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364 contents.
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365
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366 On the other hand, if the layer revision has changed, when compared to the
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367 last time it has been rendered (stored in `lastRevision_`), then we need to
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368 ask the slice to create a brand new layer.
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369
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370 Another way to see it is that layer rendering depend on model data and view
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371 data. The model data is not mutable in the layer and, if the model changes, the
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372 layer must be recreated.
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373
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374 If only the view properties change (the configurator), we call ApplyStyle
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375 (that **will** mutate some of the layer internals)
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376
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377 Please note that the renderer does **not** know about the configurator : the
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378 renderer uses properies in the layer and does not care whether those have
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379 been set once at construction time or at every frame (configuration time).
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380
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381
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382 ## Cookbook
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383
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384 ### Simple application
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385
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386 #### Building
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387
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388 In order to create a Stone application, you need to:
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389
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390 - CMake-based application:
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391 ```
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392 include(${STONE_SOURCES_DIR}/Resources/CMake/OrthancStoneConfiguration.cmake)
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393 ```
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394 with this library target that you have to define:
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395 ```
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396 add_library(OrthancStone STATIC ${ORTHANC_STONE_SOURCES})
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397 ```
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398 then link with this library:
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399 ```
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400 target_link_libraries(MyStoneApplication OrthancStone)
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401 ```
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402
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403 Building is supported with emscripten, Visual C++ (>= 9.0), gcc...
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404
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405 emscripten recommended version >= 1.38.41
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406
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407 These are very rough guidelines. See the `Samples` folder for actual examples.
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408
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409 #### Structure
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410
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411 The code requires a loader (object that )
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412
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413 Initialize:
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414
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415 ```
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416 Orthanc::Logging::Initialize();
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417 Orthanc::Logging::EnableInfoLevel(true);
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418 ```
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419 Call, in WASM:
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420 ```
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421 DISPATCH_JAVASCRIPT_EVENT("StoneInitialized");
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422 ```
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423
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424 # Notes
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425
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426 - It is NOT possible to abandon the existing loaders : they contain too much loader-specific getters
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427
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428
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429