Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Oracle/GenericOracleRunner.cpp @ 1937:47724d23feaf
fix build of wasm unit tests
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 06 May 2022 15:52:54 +0200 |
parents | 7053b8a0aaec |
children | 07964689cb0b |
rev | line source |
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1077 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
1077 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
1077 | 10 * as published by the Free Software Foundation, either version 3 of |
11 * the License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
1077 | 21 **/ |
22 | |
23 | |
24 #include "GenericOracleRunner.h" | |
25 | |
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26 #if !defined(ORTHANC_ENABLE_DCMTK) |
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27 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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28 #endif |
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29 |
1077 | 30 #include "GetOrthancImageCommand.h" |
31 #include "GetOrthancWebViewerJpegCommand.h" | |
32 #include "HttpCommand.h" | |
33 #include "OracleCommandExceptionMessage.h" | |
34 #include "OrthancRestApiCommand.h" | |
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35 #include "ParseDicomFromFileCommand.h" |
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36 #include "ParseDicomFromWadoCommand.h" |
1104 | 37 #include "ReadFileCommand.h" |
1077 | 38 |
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39 #if ORTHANC_ENABLE_DCMTK == 1 |
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40 # include "ParseDicomSuccessMessage.h" |
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41 # include <dcmtk/dcmdata/dcdeftag.h> |
1153 | 42 # include <dcmtk/dcmdata/dcfilefo.h> |
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43 static unsigned int BUCKET_DICOMDIR = 0; |
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44 static unsigned int BUCKET_SOP = 1; |
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45 #endif |
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46 |
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47 #include <Compression/GzipCompressor.h> |
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48 #include <HttpClient.h> |
1624 | 49 #include <Logging.h> |
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50 #include <OrthancException.h> |
1624 | 51 #include <SystemToolbox.h> |
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52 #include <Toolbox.h> |
1104 | 53 |
54 #include <boost/filesystem.hpp> | |
1077 | 55 |
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56 |
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57 |
1077 | 58 namespace OrthancStone |
59 { | |
60 static void CopyHttpHeaders(Orthanc::HttpClient& client, | |
61 const Orthanc::HttpClient::HttpHeaders& headers) | |
62 { | |
63 for (Orthanc::HttpClient::HttpHeaders::const_iterator | |
1571 | 64 it = headers.begin(); it != headers.end(); ++it ) |
1077 | 65 { |
66 client.AddHeader(it->first, it->second); | |
67 } | |
68 } | |
69 | |
70 | |
71 static void DecodeAnswer(std::string& answer, | |
72 const Orthanc::HttpClient::HttpHeaders& headers) | |
73 { | |
74 Orthanc::HttpCompression contentEncoding = Orthanc::HttpCompression_None; | |
75 | |
76 for (Orthanc::HttpClient::HttpHeaders::const_iterator it = headers.begin(); | |
77 it != headers.end(); ++it) | |
78 { | |
79 std::string s; | |
80 Orthanc::Toolbox::ToLowerCase(s, it->first); | |
81 | |
82 if (s == "content-encoding") | |
83 { | |
84 if (it->second == "gzip") | |
85 { | |
86 contentEncoding = Orthanc::HttpCompression_Gzip; | |
87 } | |
88 else | |
89 { | |
90 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, | |
91 "Unsupported HTTP Content-Encoding: " + it->second); | |
92 } | |
93 | |
94 break; | |
95 } | |
96 } | |
97 | |
98 if (contentEncoding == Orthanc::HttpCompression_Gzip) | |
99 { | |
100 std::string compressed; | |
101 answer.swap(compressed); | |
102 | |
103 Orthanc::GzipCompressor compressor; | |
104 compressor.Uncompress(answer, compressed.c_str(), compressed.size()); | |
105 | |
106 LOG(INFO) << "Uncompressing gzip Encoding: from " << compressed.size() | |
107 << " to " << answer.size() << " bytes"; | |
108 } | |
109 } | |
110 | |
111 | |
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112 static void RunHttpCommand(std::string& answer, |
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113 Orthanc::HttpClient::HttpHeaders& answerHeaders, |
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114 const HttpCommand& command) |
1077 | 115 { |
116 Orthanc::HttpClient client; | |
117 client.SetUrl(command.GetUrl()); | |
118 client.SetMethod(command.GetMethod()); | |
119 client.SetTimeout(command.GetTimeout()); | |
120 | |
121 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
122 | |
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123 if (command.HasCredentials()) |
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124 { |
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125 client.SetCredentials(command.GetUsername().c_str(), command.GetPassword().c_str()); |
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126 } |
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127 |
1077 | 128 if (command.GetMethod() == Orthanc::HttpMethod_Post || |
129 command.GetMethod() == Orthanc::HttpMethod_Put) | |
130 { | |
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131 client.SetExternalBody(command.GetBody()); |
1077 | 132 } |
133 | |
134 client.ApplyAndThrowException(answer, answerHeaders); | |
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135 client.ClearBody(); |
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136 |
1077 | 137 DecodeAnswer(answer, answerHeaders); |
138 } | |
139 | |
140 | |
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141 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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142 IMessageEmitter& emitter, |
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143 const HttpCommand& command) |
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144 { |
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145 std::string answer; |
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146 Orthanc::HttpClient::HttpHeaders answerHeaders; |
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147 RunHttpCommand(answer, answerHeaders, command); |
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148 |
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149 HttpCommand::SuccessMessage message(command, answerHeaders, answer); |
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150 emitter.EmitMessage(receiver, message); |
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151 } |
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152 |
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153 |
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154 static void RunOrthancRestApiCommand(std::string& answer, |
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155 Orthanc::HttpClient::HttpHeaders& answerHeaders, |
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156 const Orthanc::WebServiceParameters& orthanc, |
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157 const OrthancRestApiCommand& command) |
1077 | 158 { |
159 Orthanc::HttpClient client(orthanc, command.GetUri()); | |
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160 client.SetRedirectionFollowed(false); |
1077 | 161 client.SetMethod(command.GetMethod()); |
162 client.SetTimeout(command.GetTimeout()); | |
163 | |
164 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
165 | |
166 if (command.GetMethod() == Orthanc::HttpMethod_Post || | |
167 command.GetMethod() == Orthanc::HttpMethod_Put) | |
168 { | |
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169 client.SetExternalBody(command.GetBody()); |
1077 | 170 } |
171 | |
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172 client.ApplyAndThrowException(answer, answerHeaders); |
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173 client.ClearBody(); |
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174 DecodeAnswer(answer, answerHeaders); |
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175 } |
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176 |
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177 |
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178 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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179 IMessageEmitter& emitter, |
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180 const Orthanc::WebServiceParameters& orthanc, |
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181 const OrthancRestApiCommand& command) |
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182 { |
1077 | 183 std::string answer; |
184 Orthanc::HttpClient::HttpHeaders answerHeaders; | |
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185 RunOrthancRestApiCommand(answer, answerHeaders, orthanc, command); |
1077 | 186 |
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187 OrthancRestApiCommand::SuccessMessage message(command, answerHeaders, answer); |
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188 emitter.EmitMessage(receiver, message); |
1077 | 189 } |
190 | |
191 | |
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192 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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193 IMessageEmitter& emitter, |
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194 const Orthanc::WebServiceParameters& orthanc, |
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195 const GetOrthancImageCommand& command) |
1077 | 196 { |
197 Orthanc::HttpClient client(orthanc, command.GetUri()); | |
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198 client.SetRedirectionFollowed(false); |
1077 | 199 client.SetTimeout(command.GetTimeout()); |
200 | |
201 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
202 | |
203 std::string answer; | |
204 Orthanc::HttpClient::HttpHeaders answerHeaders; | |
205 client.ApplyAndThrowException(answer, answerHeaders); | |
206 | |
207 DecodeAnswer(answer, answerHeaders); | |
208 | |
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209 command.ProcessHttpAnswer(receiver, emitter, answer, answerHeaders); |
1077 | 210 } |
211 | |
212 | |
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213 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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214 IMessageEmitter& emitter, |
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215 const Orthanc::WebServiceParameters& orthanc, |
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216 const GetOrthancWebViewerJpegCommand& command) |
1077 | 217 { |
218 Orthanc::HttpClient client(orthanc, command.GetUri()); | |
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219 client.SetRedirectionFollowed(false); |
1077 | 220 client.SetTimeout(command.GetTimeout()); |
221 | |
222 CopyHttpHeaders(client, command.GetHttpHeaders()); | |
223 | |
224 std::string answer; | |
225 Orthanc::HttpClient::HttpHeaders answerHeaders; | |
226 client.ApplyAndThrowException(answer, answerHeaders); | |
227 | |
228 DecodeAnswer(answer, answerHeaders); | |
229 | |
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230 command.ProcessHttpAnswer(receiver, emitter, answer); |
1077 | 231 } |
232 | |
233 | |
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234 static std::string GetPath(const std::string& root, |
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235 const std::string& file) |
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236 { |
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237 boost::filesystem::path a(root); |
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238 boost::filesystem::path b(file); |
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239 |
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240 boost::filesystem::path c; |
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241 if (b.is_absolute()) |
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242 { |
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243 c = b; |
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244 } |
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245 else |
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246 { |
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247 c = a / b; |
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248 } |
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249 |
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250 return c.string(); |
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251 } |
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252 |
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253 |
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254 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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255 IMessageEmitter& emitter, |
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256 const std::string& root, |
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257 const ReadFileCommand& command) |
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259 std::string path = GetPath(root, command.GetPath()); |
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260 LOG(TRACE) << "Oracle reading file: " << path; |
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261 |
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262 std::string content; |
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263 Orthanc::SystemToolbox::ReadFile(content, path, true /* log */); |
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264 |
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265 ReadFileCommand::SuccessMessage message(command, content); |
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266 emitter.EmitMessage(receiver, message); |
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267 } |
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268 |
1104 | 269 |
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270 #if ORTHANC_ENABLE_DCMTK == 1 |
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271 static Orthanc::ParsedDicomFile* ParseDicom(uint64_t& fileSize, /* OUT */ |
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272 const std::string& path, |
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273 bool isPixelData) |
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274 { |
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275 if (!Orthanc::SystemToolbox::IsRegularFile(path)) |
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276 { |
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277 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentFile); |
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278 } |
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279 |
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280 LOG(TRACE) << "Parsing DICOM file, " << (isPixelData ? "with" : "without") |
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281 << " pixel data: " << path; |
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282 |
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283 boost::posix_time::ptime start = boost::posix_time::microsec_clock::local_time(); |
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284 |
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285 fileSize = Orthanc::SystemToolbox::GetFileSize(path); |
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286 |
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287 // Check for 32bit systems |
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288 if (fileSize != static_cast<uint64_t>(static_cast<size_t>(fileSize))) |
1104 | 289 { |
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290 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotEnoughMemory); |
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291 } |
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292 |
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293 DcmFileFormat dicom; |
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294 bool ok; |
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295 |
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296 if (isPixelData) |
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297 { |
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298 ok = dicom.loadFile(path.c_str()).good(); |
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299 } |
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300 else |
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301 { |
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302 #if DCMTK_VERSION_NUMBER >= 362 |
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303 /** |
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304 * NB : We could stop at (0x3007, 0x0000) instead of |
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305 * DCM_PixelData as the Stone framework does not use further |
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306 * tags (cf. the Orthanc::DICOM_TAG_* constants), but we still |
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307 * use "PixelData" as this does not change the runtime much, and |
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308 * as it is more explicit. |
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309 **/ |
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310 static const DcmTagKey STOP = DCM_PixelData; |
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311 //static const DcmTagKey STOP(0x3007, 0x0000); |
1148 | 312 |
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313 ok = dicom.loadFileUntilTag(path.c_str(), EXS_Unknown, EGL_noChange, |
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314 DCM_MaxReadLength, ERM_autoDetect, STOP).good(); |
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315 #else |
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316 // The primitive "loadFileUntilTag" was introduced in DCMTK 3.6.2 |
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317 ok = dicom.loadFile(path.c_str()).good(); |
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318 #endif |
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319 } |
1104 | 320 |
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321 if (ok) |
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322 { |
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323 std::unique_ptr<Orthanc::ParsedDicomFile> result(new Orthanc::ParsedDicomFile(dicom)); |
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324 |
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325 boost::posix_time::ptime end = boost::posix_time::microsec_clock::local_time(); |
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326 LOG(TRACE) << path << ": parsed in " << (end-start).total_milliseconds() << " ms"; |
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327 |
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328 return result.release(); |
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329 } |
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330 else |
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331 { |
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332 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
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333 "Cannot parse file: " + path); |
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334 } |
1104 | 335 } |
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336 |
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337 |
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338 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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339 IMessageEmitter& emitter, |
1150 | 340 boost::shared_ptr<ParsedDicomCache> cache, |
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341 const std::string& root, |
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342 const ParseDicomFromFileCommand& command) |
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343 { |
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344 const std::string path = GetPath(root, command.GetPath()); |
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345 |
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346 if (cache) |
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347 { |
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348 ParsedDicomCache::Reader reader(*cache, BUCKET_DICOMDIR, path); |
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349 if (reader.IsValid() && |
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350 (!command.IsPixelDataIncluded() || |
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351 reader.HasPixelData())) |
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352 { |
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353 // Reuse the DICOM file from the cache |
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354 ParseDicomSuccessMessage message(command, command.GetSource(), reader.GetDicom(), |
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355 reader.GetFileSize(), reader.HasPixelData()); |
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356 emitter.EmitMessage(receiver, message); |
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357 return; |
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358 } |
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359 } |
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360 |
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361 uint64_t fileSize; |
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362 std::unique_ptr<Orthanc::ParsedDicomFile> parsed(ParseDicom(fileSize, path, command.IsPixelDataIncluded())); |
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363 |
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364 if (fileSize != static_cast<size_t>(fileSize)) |
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365 { |
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366 // Cannot load such a large file on 32-bit architecture |
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367 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotEnoughMemory); |
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368 } |
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369 |
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370 { |
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371 ParseDicomSuccessMessage message |
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372 (command, command.GetSource(), *parsed, |
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373 static_cast<size_t>(fileSize), command.IsPixelDataIncluded()); |
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374 emitter.EmitMessage(receiver, message); |
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375 } |
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376 |
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377 if (cache) |
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378 { |
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379 // Store it into the cache for future use |
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380 |
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381 // Invalidate to overwrite DICOM instance that would already |
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382 // be stored without pixel data |
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383 cache->Invalidate(BUCKET_DICOMDIR, path); |
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384 |
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385 cache->Acquire(BUCKET_DICOMDIR, path, parsed.release(), |
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386 static_cast<size_t>(fileSize), command.IsPixelDataIncluded()); |
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387 } |
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388 } |
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389 |
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390 |
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391 static void RunInternal(boost::weak_ptr<IObserver> receiver, |
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392 IMessageEmitter& emitter, |
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393 boost::shared_ptr<ParsedDicomCache> cache, |
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394 const Orthanc::WebServiceParameters& orthanc, |
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395 const ParseDicomFromWadoCommand& command) |
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396 { |
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397 if (cache) |
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398 { |
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399 ParsedDicomCache::Reader reader(*cache, BUCKET_SOP, command.GetSopInstanceUid()); |
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400 if (reader.IsValid() && |
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401 reader.HasPixelData()) |
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402 { |
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403 // Reuse the DICOM file from the cache |
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404 ParseDicomSuccessMessage message(command, command.GetSource(), reader.GetDicom(), |
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405 reader.GetFileSize(), reader.HasPixelData()); |
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406 emitter.EmitMessage(receiver, message); |
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407 return; |
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408 } |
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409 } |
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410 |
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411 std::string answer; |
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412 Orthanc::HttpClient::HttpHeaders answerHeaders; |
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413 |
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414 switch (command.GetRestCommand().GetType()) |
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415 { |
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416 case IOracleCommand::Type_Http: |
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417 RunHttpCommand(answer, answerHeaders, dynamic_cast<const HttpCommand&>(command.GetRestCommand())); |
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418 break; |
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419 |
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420 case IOracleCommand::Type_OrthancRestApi: |
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421 RunOrthancRestApiCommand(answer, answerHeaders, orthanc, |
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422 dynamic_cast<const OrthancRestApiCommand&>(command.GetRestCommand())); |
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423 break; |
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424 |
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425 default: |
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426 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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427 } |
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428 |
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429 size_t fileSize; |
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430 std::unique_ptr<Orthanc::ParsedDicomFile> parsed(ParseDicomSuccessMessage::ParseWadoAnswer(fileSize, answer, answerHeaders)); |
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431 |
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432 { |
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433 ParseDicomSuccessMessage message(command, command.GetSource(), *parsed, fileSize, |
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434 true /* pixel data always is included in WADO-RS */); |
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435 emitter.EmitMessage(receiver, message); |
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436 } |
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437 |
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438 if (cache) |
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439 { |
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440 // Store it into the cache for future use |
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441 cache->Acquire(BUCKET_SOP, command.GetSopInstanceUid(), parsed.release(), fileSize, true); |
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442 } |
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443 } |
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444 #endif |
1104 | 445 |
446 | |
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447 void GenericOracleRunner::Run(boost::weak_ptr<IObserver> receiver, |
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448 IMessageEmitter& emitter, |
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449 const IOracleCommand& command) |
1077 | 450 { |
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451 Orthanc::ErrorCode error = Orthanc::ErrorCode_Success; |
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452 |
1077 | 453 try |
454 { | |
455 switch (command.GetType()) | |
456 { | |
457 case IOracleCommand::Type_Sleep: | |
458 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadParameterType, | |
459 "Sleep command cannot be executed by the runner"); | |
460 | |
461 case IOracleCommand::Type_Http: | |
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462 RunInternal(receiver, emitter, dynamic_cast<const HttpCommand&>(command)); |
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463 break; |
1077 | 464 |
465 case IOracleCommand::Type_OrthancRestApi: | |
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466 RunInternal(receiver, emitter, orthanc_, |
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467 dynamic_cast<const OrthancRestApiCommand&>(command)); |
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468 break; |
1077 | 469 |
470 case IOracleCommand::Type_GetOrthancImage: | |
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471 RunInternal(receiver, emitter, orthanc_, |
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472 dynamic_cast<const GetOrthancImageCommand&>(command)); |
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473 break; |
1077 | 474 |
475 case IOracleCommand::Type_GetOrthancWebViewerJpeg: | |
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476 RunInternal(receiver, emitter, orthanc_, |
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477 dynamic_cast<const GetOrthancWebViewerJpegCommand&>(command)); |
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478 break; |
1077 | 479 |
1104 | 480 case IOracleCommand::Type_ReadFile: |
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481 RunInternal(receiver, emitter, rootDirectory_, |
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482 dynamic_cast<const ReadFileCommand&>(command)); |
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483 break; |
1104 | 484 |
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485 case IOracleCommand::Type_ParseDicomFromFile: |
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486 case IOracleCommand::Type_ParseDicomFromWado: |
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487 #if ORTHANC_ENABLE_DCMTK == 1 |
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488 switch (command.GetType()) |
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489 { |
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490 case IOracleCommand::Type_ParseDicomFromFile: |
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491 RunInternal(receiver, emitter, dicomCache_, rootDirectory_, |
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492 dynamic_cast<const ParseDicomFromFileCommand&>(command)); |
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493 break; |
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494 |
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495 case IOracleCommand::Type_ParseDicomFromWado: |
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496 RunInternal(receiver, emitter, dicomCache_, orthanc_, |
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497 dynamic_cast<const ParseDicomFromWadoCommand&>(command)); |
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498 break; |
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499 |
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500 default: |
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501 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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502 } |
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503 break; |
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504 #else |
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505 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, |
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506 "DCMTK must be enabled to parse DICOM files"); |
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507 #endif |
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508 |
1077 | 509 default: |
510 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
511 } | |
512 } | |
513 catch (Orthanc::OrthancException& e) | |
514 { | |
515 LOG(ERROR) << "Exception within the oracle: " << e.What(); | |
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516 error = e.GetErrorCode(); |
1077 | 517 } |
518 catch (...) | |
519 { | |
520 LOG(ERROR) << "Threaded exception within the oracle"; | |
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521 error = Orthanc::ErrorCode_InternalError; |
1077 | 522 } |
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523 |
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524 if (error != Orthanc::ErrorCode_Success) |
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525 { |
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526 OracleCommandExceptionMessage message(command, error); |
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527 emitter.EmitMessage(receiver, message); |
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528 } |
1077 | 529 } |
530 } |