annotate Applications/Samples/BasicPetCtFusionApplication.h @ 999:2d69b8bee484

Added tests for Dicom structure set classes (loaders and utils)
author Benjamin Golinvaux <bgo@osimis.io>
date Fri, 20 Sep 2019 11:58:33 +0200
parents b70e9be013e4
children 2d8ab34c8c91
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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23
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24 #include "SampleInteractor.h"
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25
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5412adf19980 resort to OrthancFramework
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26 #include <Core/Logging.h>
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28 namespace OrthancStone
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29 {
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30 namespace Samples
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31 {
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32 class BasicPetCtFusionApplication : public SampleApplicationBase
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33 {
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34 private:
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35 class Interactor : public SampleInteractor
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36 {
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37 public:
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38 static void SetStyle(LayeredSceneWidget& widget,
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39 bool ct,
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40 bool pet)
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41 {
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42 if (ct)
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43 {
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44 RenderStyle style;
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45 style.windowing_ = ImageWindowing_Bone;
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46 widget.SetLayerStyle(0, style);
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47 }
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48 else
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49 {
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50 RenderStyle style;
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51 style.visible_ = false;
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52 widget.SetLayerStyle(0, style);
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53 }
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55 if (ct && pet)
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56 {
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57 RenderStyle style;
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58 style.applyLut_ = true;
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59 style.alpha_ = 0.5;
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60 widget.SetLayerStyle(1, style);
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61 }
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62 else if (pet)
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63 {
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64 RenderStyle style;
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65 style.applyLut_ = true;
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66 widget.SetLayerStyle(1, style);
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67 }
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68 else
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69 {
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70 RenderStyle style;
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71 style.visible_ = false;
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72 widget.SetLayerStyle(1, style);
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73 }
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74 }
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77 static bool IsVisible(LayeredSceneWidget& widget,
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78 size_t layer)
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79 {
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80 RenderStyle style = widget.GetLayerStyle(layer);
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81 return style.visible_;
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82 }
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85 static void ToggleInterpolation(LayeredSceneWidget& widget,
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86 size_t layer)
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87 {
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88 RenderStyle style = widget.GetLayerStyle(layer);
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89
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90 if (style.interpolation_ == ImageInterpolation_Bilinear)
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91 {
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92 style.interpolation_ = ImageInterpolation_Nearest;
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93 }
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94 else
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95 {
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96 style.interpolation_ = ImageInterpolation_Bilinear;
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97 }
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98
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99 widget.SetLayerStyle(layer, style);
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100 }
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101
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102
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103 Interactor(VolumeImage& volume,
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104 VolumeProjection projection,
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105 bool reverse) :
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106 SampleInteractor(volume, projection, reverse)
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107 {
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108 }
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109
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110
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111 virtual void KeyPressed(WorldSceneWidget& widget,
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112 char key,
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113 KeyboardModifiers modifiers,
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114 IStatusBar* statusBar)
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115 {
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116 LayeredSceneWidget& layered = dynamic_cast<LayeredSceneWidget&>(widget);
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117
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118 switch (key)
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119 {
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120 case 'c':
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121 // Toggle the visibility of the CT layer
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122 SetStyle(layered, !IsVisible(layered, 0), IsVisible(layered, 1));
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123 break;
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124
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125 case 'p':
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126 // Toggle the visibility of the PET layer
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127 SetStyle(layered, IsVisible(layered, 0), !IsVisible(layered, 1));
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128 break;
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129
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130 case 'i':
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131 {
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132 // Toggle on/off the interpolation
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133 ToggleInterpolation(layered, 0);
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134 ToggleInterpolation(layered, 1);
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135 break;
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136 }
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137
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138 default:
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139 break;
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140 }
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141 }
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142 };
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143
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144
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145 public:
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146 virtual void DeclareCommandLineOptions(boost::program_options::options_description& options)
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147 {
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148 boost::program_options::options_description generic("Sample options");
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149 generic.add_options()
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150 ("ct", boost::program_options::value<std::string>(),
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151 "Orthanc ID of the CT series")
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152 ("pet", boost::program_options::value<std::string>(),
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153 "Orthanc ID of the PET series")
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154 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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155 "Number of download threads for the CT series")
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156 ;
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157
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158 options.add(generic);
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159 }
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160
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161 virtual void Initialize(BasicApplicationContext& context,
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162 IStatusBar& statusBar,
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163 const boost::program_options::variables_map& parameters)
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164 {
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165 using namespace OrthancStone;
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166
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167 if (parameters.count("ct") != 1 ||
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168 parameters.count("pet") != 1)
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169 {
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170 LOG(ERROR) << "The series ID is missing";
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171 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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172 }
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173
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174 std::string ct = parameters["ct"].as<std::string>();
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175 std::string pet = parameters["pet"].as<std::string>();
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176 unsigned int threads = parameters["threads"].as<unsigned int>();
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177
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178 VolumeImage& ctVolume = context.AddSeriesVolume(ct, true /* progressive download */, threads);
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179 VolumeImage& petVolume = context.AddSeriesVolume(pet, true /* progressive download */, 1);
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180
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181 // Take the PET volume as the reference for the slices
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182 std::auto_ptr<Interactor> interactor(new Interactor(petVolume, VolumeProjection_Axial, false /* don't reverse normal */));
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183
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184 std::auto_ptr<LayeredSceneWidget> widget(new LayeredSceneWidget);
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185 widget->AddLayer(new VolumeImage::LayerFactory(ctVolume));
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186 widget->AddLayer(new VolumeImage::LayerFactory(petVolume));
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187 widget->SetSlice(interactor->GetCursor().GetCurrentSlice());
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188 widget->SetInteractor(*interactor);
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189
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190 Interactor::SetStyle(*widget, true, true); // Initially, show both CT and PET layers
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191
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192 context.AddInteractor(interactor.release());
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193 context.SetCentralWidget(widget.release());
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194
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195 statusBar.SetMessage("Use the key \"t\" to toggle the fullscreen mode");
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196 statusBar.SetMessage("Use the key \"c\" to show/hide the CT layer");
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197 statusBar.SetMessage("Use the key \"p\" to show/hide the PET layer");
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198 statusBar.SetMessage("Use the key \"i\" to toggle the smoothing of the images");
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199 }
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200 };
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201 }
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202 }