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0
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #pragma once
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34
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35 #include "SampleInteractor.h"
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36
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37 #include "../Framework/Layers/SiblingSliceLocationFactory.h"
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38 #include "../Framework/Layers/DicomStructureSetRendererFactory.h"
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39 #include "../Framework/Widgets/LayoutWidget.h"
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40
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16
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41 #include "../Resources/Orthanc/Core/Logging.h"
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0
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42
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43 namespace OrthancStone
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44 {
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45 namespace Samples
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46 {
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47 class LayoutPetCtFusionApplication :
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48 public SampleApplicationBase,
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49 public LayeredSceneWidget::ISliceObserver,
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50 public WorldSceneWidget::IWorldObserver
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51 {
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52 private:
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53 class Interactor : public SampleInteractor
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54 {
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55 private:
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56 LayoutPetCtFusionApplication& that_;
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57
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58 public:
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59 Interactor(LayoutPetCtFusionApplication& that,
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60 VolumeImage& volume,
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61 VolumeProjection projection,
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62 bool reverse) :
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63 SampleInteractor(volume, projection, reverse),
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64 that_(that)
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65 {
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66 }
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67
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68 virtual IWorldSceneMouseTracker* CreateMouseTracker(WorldSceneWidget& widget,
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69 const SliceGeometry& slice,
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70 const ViewportGeometry& view,
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71 MouseButton button,
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72 double x,
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73 double y,
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74 IStatusBar* statusBar)
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75 {
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76 if (button == MouseButton_Left)
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77 {
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78 // Center the sibling views over the clicked point
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79 Vector p = slice.MapSliceToWorldCoordinates(x, y);
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80
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81 if (statusBar != NULL)
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82 {
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83 char buf[64];
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84 sprintf(buf, "Click on coordinates (%.02f,%.02f,%.02f) in cm", p[0] / 10.0, p[1] / 10.0, p[2] / 10.0);
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85 statusBar->SetMessage(buf);
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86 }
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87
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88 that_.interactorAxial_->LookupSliceContainingPoint(*that_.ctAxial_, p);
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89 that_.interactorCoronal_->LookupSliceContainingPoint(*that_.ctCoronal_, p);
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90 that_.interactorSagittal_->LookupSliceContainingPoint(*that_.ctSagittal_, p);
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91 }
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92
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93 return NULL;
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94 }
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95
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96 virtual void KeyPressed(WorldSceneWidget& widget,
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97 char key,
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98 KeyboardModifiers modifiers,
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99 IStatusBar* statusBar)
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100 {
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101 if (key == 's')
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102 {
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103 that_.SetDefaultView();
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104 }
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105 }
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106 };
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107
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108 bool processingEvent_;
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109 Interactor* interactorAxial_;
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110 Interactor* interactorCoronal_;
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111 Interactor* interactorSagittal_;
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112 LayeredSceneWidget* ctAxial_;
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113 LayeredSceneWidget* ctCoronal_;
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114 LayeredSceneWidget* ctSagittal_;
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115 LayeredSceneWidget* petAxial_;
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116 LayeredSceneWidget* petCoronal_;
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117 LayeredSceneWidget* petSagittal_;
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118 LayeredSceneWidget* fusionAxial_;
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119 LayeredSceneWidget* fusionCoronal_;
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120 LayeredSceneWidget* fusionSagittal_;
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121
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122
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123 void SetDefaultView()
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124 {
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125 petAxial_->SetDefaultView();
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126 petCoronal_->SetDefaultView();
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127 petSagittal_->SetDefaultView();
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128 }
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129
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130
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131 void AddLayer(LayeredSceneWidget& widget,
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132 VolumeImage& volume,
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133 bool isCt)
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134 {
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135 size_t layer;
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136 widget.AddLayer(layer, new VolumeImage::LayerFactory(volume));
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137
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138 if (isCt)
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139 {
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140 RenderStyle style;
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141 style.windowing_ = ImageWindowing_Bone;
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142 widget.SetLayerStyle(layer, style);
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143 }
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144 else
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145 {
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146 RenderStyle style;
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147 style.applyLut_ = true;
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25
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148 style.alpha_ = (layer == 0 ? 1.0f : 0.5f);
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0
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149 widget.SetLayerStyle(layer, style);
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150 }
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151 }
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152
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153
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154 void ConnectSiblingLocations(LayeredSceneWidget& axial,
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155 LayeredSceneWidget& coronal,
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156 LayeredSceneWidget& sagittal)
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157 {
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158 SiblingSliceLocationFactory::Configure(axial, coronal);
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159 SiblingSliceLocationFactory::Configure(axial, sagittal);
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160 SiblingSliceLocationFactory::Configure(coronal, sagittal);
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161 }
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162
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163
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164 void SynchronizeView(const WorldSceneWidget& source,
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165 const ViewportGeometry& view,
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166 LayeredSceneWidget& widget1,
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167 LayeredSceneWidget& widget2,
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168 LayeredSceneWidget& widget3)
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169 {
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170 if (&source == &widget1 ||
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171 &source == &widget2 ||
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172 &source == &widget3)
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173 {
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174 if (&source != &widget1)
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175 {
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176 widget1.SetView(view);
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177 }
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178
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179 if (&source != &widget2)
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180 {
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181 widget2.SetView(view);
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182 }
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183
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184 if (&source != &widget3)
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185 {
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186 widget3.SetView(view);
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187 }
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188 }
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189 }
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190
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191
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192 void SynchronizeSlice(const LayeredSceneWidget& source,
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193 const SliceGeometry& slice,
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194 LayeredSceneWidget& widget1,
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195 LayeredSceneWidget& widget2,
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196 LayeredSceneWidget& widget3)
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197 {
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198 if (&source == &widget1 ||
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199 &source == &widget2 ||
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200 &source == &widget3)
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201 {
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202 if (&source != &widget1)
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203 {
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204 widget1.SetSlice(slice);
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205 }
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206
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207 if (&source != &widget2)
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208 {
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209 widget2.SetSlice(slice);
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210 }
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211
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212 if (&source != &widget3)
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213 {
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214 widget3.SetSlice(slice);
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215 }
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216 }
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217 }
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218
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219
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220 LayeredSceneWidget* CreateWidget()
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221 {
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222 std::auto_ptr<LayeredSceneWidget> widget(new LayeredSceneWidget);
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223 widget->Register(dynamic_cast<WorldSceneWidget::IWorldObserver&>(*this));
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224 widget->Register(dynamic_cast<LayeredSceneWidget::ISliceObserver&>(*this));
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225 return widget.release();
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226 }
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227
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228
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229 void CreateLayout(BasicApplicationContext& context)
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230 {
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231 std::auto_ptr<OrthancStone::LayoutWidget> layout(new OrthancStone::LayoutWidget);
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232 layout->SetBackgroundCleared(true);
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233 //layout->SetBackgroundColor(255,0,0);
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234 layout->SetPadding(5);
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235
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236 OrthancStone::LayoutWidget& layoutA = dynamic_cast<OrthancStone::LayoutWidget&>
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237 (layout->AddWidget(new OrthancStone::LayoutWidget));
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238 layoutA.SetPadding(0, 0, 0, 0, 5);
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239 layoutA.SetVertical();
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240 petAxial_ = &dynamic_cast<LayeredSceneWidget&>(layoutA.AddWidget(CreateWidget()));
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241 OrthancStone::LayoutWidget& layoutA2 = dynamic_cast<OrthancStone::LayoutWidget&>
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242 (layoutA.AddWidget(new OrthancStone::LayoutWidget));
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243 layoutA2.SetPadding(0, 0, 0, 0, 5);
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244 petSagittal_ = &dynamic_cast<LayeredSceneWidget&>(layoutA2.AddWidget(CreateWidget()));
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245 petCoronal_ = &dynamic_cast<LayeredSceneWidget&>(layoutA2.AddWidget(CreateWidget()));
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246
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247 OrthancStone::LayoutWidget& layoutB = dynamic_cast<OrthancStone::LayoutWidget&>
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248 (layout->AddWidget(new OrthancStone::LayoutWidget));
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249 layoutB.SetPadding(0, 0, 0, 0, 5);
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250 layoutB.SetVertical();
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251 ctAxial_ = &dynamic_cast<LayeredSceneWidget&>(layoutB.AddWidget(CreateWidget()));
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252 OrthancStone::LayoutWidget& layoutB2 = dynamic_cast<OrthancStone::LayoutWidget&>
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253 (layoutB.AddWidget(new OrthancStone::LayoutWidget));
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254 layoutB2.SetPadding(0, 0, 0, 0, 5);
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255 ctSagittal_ = &dynamic_cast<LayeredSceneWidget&>(layoutB2.AddWidget(CreateWidget()));
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256 ctCoronal_ = &dynamic_cast<LayeredSceneWidget&>(layoutB2.AddWidget(CreateWidget()));
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257
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258 OrthancStone::LayoutWidget& layoutC = dynamic_cast<OrthancStone::LayoutWidget&>
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259 (layout->AddWidget(new OrthancStone::LayoutWidget));
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260 layoutC.SetPadding(0, 0, 0, 0, 5);
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261 layoutC.SetVertical();
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262 fusionAxial_ = &dynamic_cast<LayeredSceneWidget&>(layoutC.AddWidget(CreateWidget()));
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263 OrthancStone::LayoutWidget& layoutC2 = dynamic_cast<OrthancStone::LayoutWidget&>
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264 (layoutC.AddWidget(new OrthancStone::LayoutWidget));
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265 layoutC2.SetPadding(0, 0, 0, 0, 5);
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266 fusionSagittal_ = &dynamic_cast<LayeredSceneWidget&>(layoutC2.AddWidget(CreateWidget()));
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267 fusionCoronal_ = &dynamic_cast<LayeredSceneWidget&>(layoutC2.AddWidget(CreateWidget()));
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268
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269 context.SetCentralWidget(layout.release());
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270 }
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271
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272
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273 public:
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274 virtual void DeclareCommandLineOptions(boost::program_options::options_description& options)
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275 {
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276 boost::program_options::options_description generic("Sample options");
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277 generic.add_options()
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278 ("ct", boost::program_options::value<std::string>(),
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279 "Orthanc ID of the CT series")
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280 ("pet", boost::program_options::value<std::string>(),
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281 "Orthanc ID of the PET series")
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282 ("rt", boost::program_options::value<std::string>(),
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283 "Orthanc ID of the DICOM RT-STRUCT series (optional)")
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284 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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285 "Number of download threads for the CT series")
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286 ;
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287
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288 options.add(generic);
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289 }
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290
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291 virtual void Initialize(BasicApplicationContext& context,
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292 IStatusBar& statusBar,
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293 const boost::program_options::variables_map& parameters)
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294 {
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295 using namespace OrthancStone;
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296
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297 processingEvent_ = true;
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298
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299 if (parameters.count("ct") != 1 ||
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300 parameters.count("pet") != 1)
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301 {
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302 LOG(ERROR) << "The series ID is missing";
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303 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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304 }
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305
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306 std::string ct = parameters["ct"].as<std::string>();
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307 std::string pet = parameters["pet"].as<std::string>();
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308 unsigned int threads = parameters["threads"].as<unsigned int>();
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309
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310 VolumeImage& ctVolume = context.AddSeriesVolume(ct, true /* progressive download */, threads);
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311 VolumeImage& petVolume = context.AddSeriesVolume(pet, true /* progressive download */, 1);
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312
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313 // Take the PET volume as the reference for the slices
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314 interactorAxial_ = &dynamic_cast<Interactor&>
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315 (context.AddInteractor(new Interactor(*this, petVolume, VolumeProjection_Axial, false)));
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316 interactorCoronal_ = &dynamic_cast<Interactor&>
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317 (context.AddInteractor(new Interactor(*this, petVolume, VolumeProjection_Coronal, false)));
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318 interactorSagittal_ = &dynamic_cast<Interactor&>
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319 (context.AddInteractor(new Interactor(*this, petVolume, VolumeProjection_Sagittal, true)));
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320
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321 CreateLayout(context);
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322
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323 AddLayer(*ctAxial_, ctVolume, true);
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324 AddLayer(*ctCoronal_, ctVolume, true);
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325 AddLayer(*ctSagittal_, ctVolume, true);
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326
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327 AddLayer(*petAxial_, petVolume, false);
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328 AddLayer(*petCoronal_, petVolume, false);
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329 AddLayer(*petSagittal_, petVolume, false);
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330
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331 AddLayer(*fusionAxial_, ctVolume, true);
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332 AddLayer(*fusionAxial_, petVolume, false);
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333 AddLayer(*fusionCoronal_, ctVolume, true);
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334 AddLayer(*fusionCoronal_, petVolume, false);
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335 AddLayer(*fusionSagittal_, ctVolume, true);
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336 AddLayer(*fusionSagittal_, petVolume, false);
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337
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338 if (parameters.count("rt") == 1)
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339 {
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340 DicomStructureSet& rtStruct = context.AddStructureSet(parameters["rt"].as<std::string>());
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341
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342 Vector p = rtStruct.GetStructureCenter(0);
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343 interactorAxial_->GetCursor().LookupSliceContainingPoint(p);
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344
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345 ctAxial_->AddLayer(new DicomStructureSetRendererFactory(rtStruct));
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346 petAxial_->AddLayer(new DicomStructureSetRendererFactory(rtStruct));
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347 fusionAxial_->AddLayer(new DicomStructureSetRendererFactory(rtStruct));
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348 }
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349
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350 ConnectSiblingLocations(*ctAxial_, *ctCoronal_, *ctSagittal_);
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351 ConnectSiblingLocations(*petAxial_, *petCoronal_, *petSagittal_);
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352 ConnectSiblingLocations(*fusionAxial_, *fusionCoronal_, *fusionSagittal_);
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353
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354 interactorAxial_->AddWidget(*ctAxial_);
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355 interactorAxial_->AddWidget(*petAxial_);
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356 interactorAxial_->AddWidget(*fusionAxial_);
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357
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358 interactorCoronal_->AddWidget(*ctCoronal_);
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359 interactorCoronal_->AddWidget(*petCoronal_);
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360 interactorCoronal_->AddWidget(*fusionCoronal_);
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361
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362 interactorSagittal_->AddWidget(*ctSagittal_);
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363 interactorSagittal_->AddWidget(*petSagittal_);
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364 interactorSagittal_->AddWidget(*fusionSagittal_);
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365
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366 processingEvent_ = false;
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367
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368 statusBar.SetMessage("Use the key \"t\" to toggle the fullscreen mode");
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369 statusBar.SetMessage("Use the key \"s\" to reinitialize the layout");
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370 }
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371
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372 virtual void NotifySizeChange(const WorldSceneWidget& source,
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373 ViewportGeometry& view)
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374 {
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375 view.SetDefaultView();
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376 }
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377
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378 virtual void NotifyViewChange(const WorldSceneWidget& source,
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379 const ViewportGeometry& view)
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380 {
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381 if (!processingEvent_) // Avoid reentrant calls
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382 {
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383 processingEvent_ = true;
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384
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385 SynchronizeView(source, view, *ctAxial_, *petAxial_, *fusionAxial_);
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386 SynchronizeView(source, view, *ctCoronal_, *petCoronal_, *fusionCoronal_);
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387 SynchronizeView(source, view, *ctSagittal_, *petSagittal_, *fusionSagittal_);
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388
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389 processingEvent_ = false;
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390 }
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391 }
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392
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393 virtual void NotifySliceChange(const LayeredSceneWidget& source,
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394 const SliceGeometry& slice)
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395 {
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396 if (!processingEvent_) // Avoid reentrant calls
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397 {
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398 processingEvent_ = true;
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399
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400 SynchronizeSlice(source, slice, *ctAxial_, *petAxial_, *fusionAxial_);
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401 SynchronizeSlice(source, slice, *ctCoronal_, *petCoronal_, *fusionCoronal_);
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402 SynchronizeSlice(source, slice, *ctSagittal_, *petSagittal_, *fusionSagittal_);
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403
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404 processingEvent_ = false;
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405 }
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406 }
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407 };
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408 }
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409 }
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