Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Toolbox/OsiriX/CollectionOfAnnotations.cpp @ 1983:20fa913272b7
drawing rectangle probe
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 31 Oct 2022 12:32:47 +0100 |
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1 /** |
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2 * Stone of Orthanc |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
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21 **/ |
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22 |
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23 |
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24 #include "CollectionOfAnnotations.h" |
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25 |
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26 #include "ArrayValue.h" |
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27 #include "IntegerValue.h" |
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28 |
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29 #include <OrthancException.h> |
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30 |
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31 #include <cassert> |
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32 |
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33 namespace OrthancStone |
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34 { |
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35 namespace OsiriX |
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36 { |
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37 static void GetAttributes(std::map<std::string, std::string>& target, |
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38 const pugi::xml_node& node) |
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39 { |
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40 for (pugi::xml_attribute attr = node.first_attribute(); attr; attr = attr.next_attribute()) |
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41 { |
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42 target[attr.name()] = attr.value(); |
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43 } |
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44 } |
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45 |
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46 |
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47 void CollectionOfAnnotations::Clear() |
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48 { |
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49 for (size_t i = 0; i < annotations_.size(); i++) |
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50 { |
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51 assert(annotations_[i] != NULL); |
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52 delete annotations_[i]; |
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53 } |
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54 |
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55 annotations_.clear(); |
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56 index_.clear(); |
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57 } |
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58 |
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59 |
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60 const Annotation& CollectionOfAnnotations::GetAnnotation(size_t i) const |
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61 { |
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62 if (i >= annotations_.size()) |
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63 { |
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64 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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65 } |
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66 else |
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67 { |
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68 assert(annotations_[i] != NULL); |
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69 return *annotations_[i]; |
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70 } |
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71 } |
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72 |
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73 |
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74 void CollectionOfAnnotations::AddAnnotation(Annotation* annotation) |
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75 { |
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76 if (annotation == NULL) |
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77 { |
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78 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer); |
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79 } |
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80 else |
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81 { |
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82 size_t pos = annotations_.size(); |
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83 annotations_.push_back(annotation); |
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84 |
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85 SopInstanceUidIndex::iterator found = index_.find(annotation->GetSopInstanceUid()); |
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86 if (found == index_.end()) |
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87 { |
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88 std::set<size_t> s; |
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89 s.insert(pos); |
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90 index_[annotation->GetSopInstanceUid()] = s; |
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91 } |
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92 else |
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93 { |
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94 found->second.insert(pos); |
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95 } |
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96 } |
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97 } |
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98 |
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99 |
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100 void CollectionOfAnnotations::LookupSopInstanceUid(std::set<size_t>& target, |
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101 const std::string& sopInstanceUid) const |
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102 { |
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103 SopInstanceUidIndex::const_iterator found = index_.find(sopInstanceUid); |
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104 if (found == index_.end()) |
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105 { |
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106 target.clear(); |
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107 } |
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108 else |
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109 { |
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110 target = found->second; |
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111 } |
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112 } |
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113 |
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114 |
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115 void CollectionOfAnnotations::LoadXml(const char* xml, |
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116 size_t size) |
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117 { |
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118 pugi::xml_document doc; |
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119 pugi::xml_parse_result result = doc.load_buffer(xml, size); |
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120 if (!result) |
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121 { |
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122 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
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123 } |
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124 |
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125 const pugi::xml_node& root = doc.document_element(); |
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126 if (std::string(root.name()) != "plist" || |
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127 !root.first_child() || |
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128 root.first_child() != root.last_child()) |
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129 { |
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130 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
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131 } |
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132 |
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133 std::map<std::string, std::string> attributes; |
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134 GetAttributes(attributes, root); |
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135 |
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136 std::map<std::string, std::string>::const_iterator version = attributes.find("version"); |
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137 if (version == attributes.end() || |
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138 version->second != "1.0") |
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139 { |
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140 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
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141 } |
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142 |
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143 std::unique_ptr<IValue> value(IValue::Parse(root.first_child())); |
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144 |
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145 const DictionaryValue& dict = dynamic_cast<const DictionaryValue&>(*value); |
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146 |
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147 std::set<std::string> annotations; |
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148 dict.GetMembers(annotations); |
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149 |
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150 for (std::set<std::string>::const_iterator |
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151 it = annotations.begin(); it != annotations.end(); ++it) |
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152 { |
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153 const ArrayValue& images = dynamic_cast<const ArrayValue&>(dict.GetValue(*it)); |
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154 |
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155 for (size_t i = 0; i < images.GetSize(); i++) |
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156 { |
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157 const DictionaryValue& image = dynamic_cast<const DictionaryValue&>(images.GetValue(i)); |
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158 const IntegerValue& number = dynamic_cast<const IntegerValue&>(image.GetValue("NumberOfROIs")); |
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159 const ArrayValue& rois = dynamic_cast<const ArrayValue&>(image.GetValue("ROIs")); |
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160 |
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161 if (static_cast<int64_t>(rois.GetSize()) != number.GetValue()) |
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162 { |
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163 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); |
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164 } |
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165 |
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166 for (size_t j = 0; j < rois.GetSize(); j++) |
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167 { |
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168 const DictionaryValue& roi = dynamic_cast<const DictionaryValue&>(rois.GetValue(i)); |
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169 |
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170 std::unique_ptr<Annotation> annotation(Annotation::Create(roi)); |
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171 if (annotation.get() != NULL) |
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172 { |
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173 AddAnnotation(annotation.release()); |
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174 } |
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175 } |
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176 } |
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177 } |
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178 } |
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179 } |
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180 } |