annotate Applications/Samples/LayoutPetCtFusionApplication.h @ 879:12b591d5d63c am-dev

some Qt integration (wip)
author Alain Mazy <alain@mazy.be>
date Fri, 05 Jul 2019 14:52:43 +0200
parents b70e9be013e4
children 2d8ab34c8c91
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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b70e9be013e4 preparing for 2019
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #pragma once
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23
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24 #include "SampleInteractor.h"
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26 #include "../../Framework/Layers/ReferenceLineFactory.h"
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27 #include "../../Framework/Layers/DicomStructureSetSlicer.h"
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28 #include "../../Framework/Widgets/LayoutWidget.h"
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30 #include <Core/Logging.h>
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32 namespace OrthancStone
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33 {
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34 namespace Samples
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35 {
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36 class LayoutPetCtFusionApplication :
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37 public SampleApplicationBase,
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38 public LayeredSceneWidget::ISliceObserver,
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39 public WorldSceneWidget::IWorldObserver
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40 {
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41 private:
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42 class Interactor : public SampleInteractor
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43 {
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44 private:
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45 LayoutPetCtFusionApplication& that_;
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47 public:
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48 Interactor(LayoutPetCtFusionApplication& that,
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49 VolumeImage& volume,
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50 VolumeProjection projection,
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51 bool reverse) :
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52 SampleInteractor(volume, projection, reverse),
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53 that_(that)
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54 {
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55 }
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57 virtual IWorldSceneMouseTracker* CreateMouseTracker(WorldSceneWidget& widget,
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58 const SliceGeometry& slice,
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59 const ViewportGeometry& view,
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60 MouseButton button,
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61 double x,
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62 double y,
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63 IStatusBar* statusBar)
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64 {
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65 if (button == MouseButton_Left)
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66 {
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67 // Center the sibling views over the clicked point
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68 Vector p = slice.MapSliceToWorldCoordinates(x, y);
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70 if (statusBar != NULL)
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71 {
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72 char buf[64];
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73 sprintf(buf, "Click on coordinates (%.02f,%.02f,%.02f) in cm", p[0] / 10.0, p[1] / 10.0, p[2] / 10.0);
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74 statusBar->SetMessage(buf);
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75 }
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77 that_.interactorAxial_->LookupSliceContainingPoint(*that_.ctAxial_, p);
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78 that_.interactorCoronal_->LookupSliceContainingPoint(*that_.ctCoronal_, p);
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79 that_.interactorSagittal_->LookupSliceContainingPoint(*that_.ctSagittal_, p);
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80 }
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82 return NULL;
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83 }
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85 virtual void KeyPressed(WorldSceneWidget& widget,
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86 char key,
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87 KeyboardModifiers modifiers,
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88 IStatusBar* statusBar)
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89 {
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90 if (key == 's')
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91 {
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92 that_.FitContent();
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93 }
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94 }
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95 };
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96
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97 bool processingEvent_;
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98 Interactor* interactorAxial_;
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99 Interactor* interactorCoronal_;
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100 Interactor* interactorSagittal_;
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101 LayeredSceneWidget* ctAxial_;
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102 LayeredSceneWidget* ctCoronal_;
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103 LayeredSceneWidget* ctSagittal_;
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104 LayeredSceneWidget* petAxial_;
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105 LayeredSceneWidget* petCoronal_;
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106 LayeredSceneWidget* petSagittal_;
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107 LayeredSceneWidget* fusionAxial_;
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108 LayeredSceneWidget* fusionCoronal_;
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109 LayeredSceneWidget* fusionSagittal_;
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110
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111
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112 void FitContent()
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113 {
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114 petAxial_->FitContent();
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115 petCoronal_->FitContent();
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116 petSagittal_->FitContent();
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117 }
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119
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120 void AddLayer(LayeredSceneWidget& widget,
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121 VolumeImage& volume,
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122 bool isCt)
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123 {
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124 size_t layer;
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125 widget.AddLayer(layer, new VolumeImage::LayerFactory(volume));
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126
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127 if (isCt)
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128 {
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129 RenderStyle style;
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130 style.windowing_ = ImageWindowing_Bone;
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131 widget.SetLayerStyle(layer, style);
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132 }
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133 else
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134 {
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135 RenderStyle style;
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136 style.applyLut_ = true;
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137 style.alpha_ = (layer == 0 ? 1.0f : 0.5f);
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138 widget.SetLayerStyle(layer, style);
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139 }
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140 }
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142
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143 void ConnectSiblingLocations(LayeredSceneWidget& axial,
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144 LayeredSceneWidget& coronal,
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145 LayeredSceneWidget& sagittal)
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146 {
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147 ReferenceLineFactory::Configure(axial, coronal);
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148 ReferenceLineFactory::Configure(axial, sagittal);
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149 ReferenceLineFactory::Configure(coronal, sagittal);
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150 }
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151
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152
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153 void SynchronizeView(const WorldSceneWidget& source,
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154 const ViewportGeometry& view,
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155 LayeredSceneWidget& widget1,
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156 LayeredSceneWidget& widget2,
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157 LayeredSceneWidget& widget3)
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158 {
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159 if (&source == &widget1 ||
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160 &source == &widget2 ||
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161 &source == &widget3)
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162 {
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163 if (&source != &widget1)
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164 {
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165 widget1.SetView(view);
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166 }
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167
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168 if (&source != &widget2)
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169 {
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170 widget2.SetView(view);
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171 }
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172
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173 if (&source != &widget3)
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174 {
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175 widget3.SetView(view);
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176 }
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177 }
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178 }
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179
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180
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181 void SynchronizeSlice(const LayeredSceneWidget& source,
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182 const SliceGeometry& slice,
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183 LayeredSceneWidget& widget1,
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184 LayeredSceneWidget& widget2,
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185 LayeredSceneWidget& widget3)
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186 {
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187 if (&source == &widget1 ||
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188 &source == &widget2 ||
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189 &source == &widget3)
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190 {
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191 if (&source != &widget1)
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192 {
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193 widget1.SetSlice(slice);
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194 }
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195
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196 if (&source != &widget2)
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197 {
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198 widget2.SetSlice(slice);
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199 }
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200
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201 if (&source != &widget3)
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202 {
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203 widget3.SetSlice(slice);
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204 }
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205 }
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206 }
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207
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208
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209 LayeredSceneWidget* CreateWidget()
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210 {
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211 std::auto_ptr<LayeredSceneWidget> widget(new LayeredSceneWidget);
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212 widget->Register(dynamic_cast<WorldSceneWidget::IWorldObserver&>(*this));
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213 widget->Register(dynamic_cast<LayeredSceneWidget::ISliceObserver&>(*this));
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214 return widget.release();
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215 }
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216
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217
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218 void CreateLayout(BasicApplicationContext& context)
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219 {
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220 std::auto_ptr<OrthancStone::LayoutWidget> layout(new OrthancStone::LayoutWidget);
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221 layout->SetBackgroundCleared(true);
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222 //layout->SetBackgroundColor(255,0,0);
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223 layout->SetPadding(5);
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224
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225 OrthancStone::LayoutWidget& layoutA = dynamic_cast<OrthancStone::LayoutWidget&>
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226 (layout->AddWidget(new OrthancStone::LayoutWidget));
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227 layoutA.SetPadding(0, 0, 0, 0, 5);
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228 layoutA.SetVertical();
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229 petAxial_ = &dynamic_cast<LayeredSceneWidget&>(layoutA.AddWidget(CreateWidget()));
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230 OrthancStone::LayoutWidget& layoutA2 = dynamic_cast<OrthancStone::LayoutWidget&>
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231 (layoutA.AddWidget(new OrthancStone::LayoutWidget));
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232 layoutA2.SetPadding(0, 0, 0, 0, 5);
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233 petSagittal_ = &dynamic_cast<LayeredSceneWidget&>(layoutA2.AddWidget(CreateWidget()));
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234 petCoronal_ = &dynamic_cast<LayeredSceneWidget&>(layoutA2.AddWidget(CreateWidget()));
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235
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236 OrthancStone::LayoutWidget& layoutB = dynamic_cast<OrthancStone::LayoutWidget&>
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237 (layout->AddWidget(new OrthancStone::LayoutWidget));
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238 layoutB.SetPadding(0, 0, 0, 0, 5);
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239 layoutB.SetVertical();
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240 ctAxial_ = &dynamic_cast<LayeredSceneWidget&>(layoutB.AddWidget(CreateWidget()));
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241 OrthancStone::LayoutWidget& layoutB2 = dynamic_cast<OrthancStone::LayoutWidget&>
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242 (layoutB.AddWidget(new OrthancStone::LayoutWidget));
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243 layoutB2.SetPadding(0, 0, 0, 0, 5);
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244 ctSagittal_ = &dynamic_cast<LayeredSceneWidget&>(layoutB2.AddWidget(CreateWidget()));
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245 ctCoronal_ = &dynamic_cast<LayeredSceneWidget&>(layoutB2.AddWidget(CreateWidget()));
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246
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247 OrthancStone::LayoutWidget& layoutC = dynamic_cast<OrthancStone::LayoutWidget&>
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248 (layout->AddWidget(new OrthancStone::LayoutWidget));
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249 layoutC.SetPadding(0, 0, 0, 0, 5);
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250 layoutC.SetVertical();
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251 fusionAxial_ = &dynamic_cast<LayeredSceneWidget&>(layoutC.AddWidget(CreateWidget()));
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252 OrthancStone::LayoutWidget& layoutC2 = dynamic_cast<OrthancStone::LayoutWidget&>
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253 (layoutC.AddWidget(new OrthancStone::LayoutWidget));
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254 layoutC2.SetPadding(0, 0, 0, 0, 5);
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255 fusionSagittal_ = &dynamic_cast<LayeredSceneWidget&>(layoutC2.AddWidget(CreateWidget()));
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256 fusionCoronal_ = &dynamic_cast<LayeredSceneWidget&>(layoutC2.AddWidget(CreateWidget()));
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257
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258 context.SetCentralWidget(layout.release());
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259 }
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260
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261
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262 public:
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263 virtual void DeclareCommandLineOptions(boost::program_options::options_description& options)
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264 {
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265 boost::program_options::options_description generic("Sample options");
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266 generic.add_options()
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267 ("ct", boost::program_options::value<std::string>(),
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268 "Orthanc ID of the CT series")
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269 ("pet", boost::program_options::value<std::string>(),
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270 "Orthanc ID of the PET series")
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271 ("rt", boost::program_options::value<std::string>(),
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272 "Orthanc ID of the DICOM RT-STRUCT series (optional)")
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273 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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274 "Number of download threads for the CT series")
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275 ;
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276
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277 options.add(generic);
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278 }
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279
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280 virtual void Initialize(BasicApplicationContext& context,
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281 IStatusBar& statusBar,
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282 const boost::program_options::variables_map& parameters)
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283 {
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284 using namespace OrthancStone;
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285
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286 processingEvent_ = true;
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287
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288 if (parameters.count("ct") != 1 ||
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289 parameters.count("pet") != 1)
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290 {
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291 LOG(ERROR) << "The series ID is missing";
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292 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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293 }
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294
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295 std::string ct = parameters["ct"].as<std::string>();
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296 std::string pet = parameters["pet"].as<std::string>();
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297 unsigned int threads = parameters["threads"].as<unsigned int>();
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298
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299 VolumeImage& ctVolume = context.AddSeriesVolume(ct, true /* progressive download */, threads);
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300 VolumeImage& petVolume = context.AddSeriesVolume(pet, true /* progressive download */, 1);
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301
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302 // Take the PET volume as the reference for the slices
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303 interactorAxial_ = &dynamic_cast<Interactor&>
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304 (context.AddInteractor(new Interactor(*this, petVolume, VolumeProjection_Axial, false)));
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305 interactorCoronal_ = &dynamic_cast<Interactor&>
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306 (context.AddInteractor(new Interactor(*this, petVolume, VolumeProjection_Coronal, false)));
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307 interactorSagittal_ = &dynamic_cast<Interactor&>
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308 (context.AddInteractor(new Interactor(*this, petVolume, VolumeProjection_Sagittal, true)));
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309
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310 CreateLayout(context);
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311
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312 AddLayer(*ctAxial_, ctVolume, true);
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313 AddLayer(*ctCoronal_, ctVolume, true);
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314 AddLayer(*ctSagittal_, ctVolume, true);
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315
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316 AddLayer(*petAxial_, petVolume, false);
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317 AddLayer(*petCoronal_, petVolume, false);
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318 AddLayer(*petSagittal_, petVolume, false);
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319
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320 AddLayer(*fusionAxial_, ctVolume, true);
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321 AddLayer(*fusionAxial_, petVolume, false);
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322 AddLayer(*fusionCoronal_, ctVolume, true);
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323 AddLayer(*fusionCoronal_, petVolume, false);
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324 AddLayer(*fusionSagittal_, ctVolume, true);
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325 AddLayer(*fusionSagittal_, petVolume, false);
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326
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327 if (parameters.count("rt") == 1)
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328 {
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329 DicomStructureSet& rtStruct = context.AddStructureSet(parameters["rt"].as<std::string>());
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330
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331 Vector p = rtStruct.GetStructureCenter(0);
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332 interactorAxial_->GetCursor().LookupSliceContainingPoint(p);
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333
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334 ctAxial_->AddLayer(new DicomStructureSetSlicer(rtStruct));
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335 petAxial_->AddLayer(new DicomStructureSetSlicer(rtStruct));
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336 fusionAxial_->AddLayer(new DicomStructureSetSlicer(rtStruct));
0
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337 }
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338
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339 ConnectSiblingLocations(*ctAxial_, *ctCoronal_, *ctSagittal_);
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340 ConnectSiblingLocations(*petAxial_, *petCoronal_, *petSagittal_);
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341 ConnectSiblingLocations(*fusionAxial_, *fusionCoronal_, *fusionSagittal_);
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342
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343 interactorAxial_->AddWidget(*ctAxial_);
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344 interactorAxial_->AddWidget(*petAxial_);
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345 interactorAxial_->AddWidget(*fusionAxial_);
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346
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347 interactorCoronal_->AddWidget(*ctCoronal_);
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348 interactorCoronal_->AddWidget(*petCoronal_);
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349 interactorCoronal_->AddWidget(*fusionCoronal_);
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350
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351 interactorSagittal_->AddWidget(*ctSagittal_);
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352 interactorSagittal_->AddWidget(*petSagittal_);
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353 interactorSagittal_->AddWidget(*fusionSagittal_);
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354
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355 processingEvent_ = false;
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356
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357 statusBar.SetMessage("Use the key \"t\" to toggle the fullscreen mode");
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358 statusBar.SetMessage("Use the key \"s\" to reinitialize the layout");
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359 }
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360
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361 virtual void NotifySizeChange(const WorldSceneWidget& source,
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362 ViewportGeometry& view)
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363 {
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364 view.FitContent();
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365 }
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366
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367 virtual void NotifyViewChange(const WorldSceneWidget& source,
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368 const ViewportGeometry& view)
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369 {
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370 if (!processingEvent_) // Avoid reentrant calls
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371 {
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372 processingEvent_ = true;
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373
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374 SynchronizeView(source, view, *ctAxial_, *petAxial_, *fusionAxial_);
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375 SynchronizeView(source, view, *ctCoronal_, *petCoronal_, *fusionCoronal_);
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376 SynchronizeView(source, view, *ctSagittal_, *petSagittal_, *fusionSagittal_);
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377
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378 processingEvent_ = false;
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379 }
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380 }
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381
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382 virtual void NotifySliceContentChange(const LayeredSceneWidget& source,
0
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383 const SliceGeometry& slice)
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384 {
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385 if (!processingEvent_) // Avoid reentrant calls
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386 {
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387 processingEvent_ = true;
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388
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389 SynchronizeSlice(source, slice, *ctAxial_, *petAxial_, *fusionAxial_);
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390 SynchronizeSlice(source, slice, *ctCoronal_, *petCoronal_, *fusionCoronal_);
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391 SynchronizeSlice(source, slice, *ctSagittal_, *petSagittal_, *fusionSagittal_);
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392
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393 processingEvent_ = false;
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394 }
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395 }
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396 };
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397 }
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398 }