annotate OrthancStone/Sources/Volumes/OrientedVolumeBoundingBox.cpp @ 1953:0661115af939 deep-learning

first successful application of deep learning
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 16 Aug 2022 15:05:51 +0200
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
1871
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "OrientedVolumeBoundingBox.h"
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25
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26 #include "../Toolbox/GeometryToolbox.h"
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27 #include "ImageBuffer3D.h"
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28
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29 #include <OrthancException.h>
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30
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31 #include <cassert>
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32
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33 namespace OrthancStone
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34 {
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35 OrientedVolumeBoundingBox::OrientedVolumeBoundingBox(const VolumeImageGeometry& geometry)
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36 {
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37 unsigned int n = geometry.GetDepth();
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38 if (n < 1)
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39 {
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40 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize);
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41 }
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42
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43 Vector dim = geometry.GetVoxelDimensions(VolumeProjection_Axial);
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44
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45 u_ = geometry.GetAxialGeometry().GetAxisX();
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46 v_ = geometry.GetAxialGeometry().GetAxisY();
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47 w_ = geometry.GetAxialGeometry().GetNormal();
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48
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49 hu_ = static_cast<double>(geometry.GetWidth() * dim[0] / 2.0);
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50 hv_ = static_cast<double>(geometry.GetHeight() * dim[1] / 2.0);
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51 hw_ = static_cast<double>(geometry.GetDepth() * dim[2] / 2.0);
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52
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53 c_ = (geometry.GetAxialGeometry().GetOrigin() +
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54 (hu_ - dim[0] / 2.0) * u_ +
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55 (hv_ - dim[1] / 2.0) * v_ +
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56 (hw_ - dim[2] / 2.0) * w_);
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57 }
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58
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59
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60 bool OrientedVolumeBoundingBox::HasIntersectionWithPlane(std::vector<Vector>& points,
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61 const Vector& normal,
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62 double d) const
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63 {
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64 assert(normal.size() == 3);
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65
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66 double r = (hu_ * fabs(boost::numeric::ublas::inner_prod(normal, u_)) +
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67 hv_ * fabs(boost::numeric::ublas::inner_prod(normal, v_)) +
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68 hw_ * fabs(boost::numeric::ublas::inner_prod(normal, w_)));
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69
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70 double s = boost::numeric::ublas::inner_prod(normal, c_) + d;
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71
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72 if (fabs(s) >= r)
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73 {
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74 // No intersection, or intersection is reduced to a single point
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75 return false;
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76 }
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77 else
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78 {
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79 Vector p;
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80
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81 // Loop over all the 12 edges (segments) of the oriented
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82 // bounding box, and check whether they intersect the plane
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83
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84 // X-aligned edges
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85 if (GeometryToolbox::IntersectPlaneAndSegment
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86 (p, normal, d,
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87 c_ - u_ * hu_ - v_ * hv_ - w_ * hw_,
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88 c_ + u_ * hu_ - v_ * hv_ - w_ * hw_))
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89 {
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90 points.push_back(p);
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91 }
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92
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93 if (GeometryToolbox::IntersectPlaneAndSegment
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94 (p, normal, d,
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95 c_ - u_ * hu_ + v_ * hv_ - w_ * hw_,
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96 c_ + u_ * hu_ + v_ * hv_ - w_ * hw_))
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97 {
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98 points.push_back(p);
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99 }
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100
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101 if (GeometryToolbox::IntersectPlaneAndSegment
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102 (p, normal, d,
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103 c_ - u_ * hu_ - v_ * hv_ + w_ * hw_,
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104 c_ + u_ * hu_ - v_ * hv_ + w_ * hw_))
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105 {
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106 points.push_back(p);
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107 }
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108
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109 if (GeometryToolbox::IntersectPlaneAndSegment
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110 (p, normal, d,
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111 c_ - u_ * hu_ + v_ * hv_ + w_ * hw_,
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112 c_ + u_ * hu_ + v_ * hv_ + w_ * hw_))
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113 {
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114 points.push_back(p);
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115 }
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116
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117 // Y-aligned edges
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118 if (GeometryToolbox::IntersectPlaneAndSegment
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119 (p, normal, d,
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120 c_ - u_ * hu_ - v_ * hv_ - w_ * hw_,
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121 c_ - u_ * hu_ + v_ * hv_ - w_ * hw_))
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122 {
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123 points.push_back(p);
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124 }
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125
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126 if (GeometryToolbox::IntersectPlaneAndSegment
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127 (p, normal, d,
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128 c_ + u_ * hu_ - v_ * hv_ - w_ * hw_,
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129 c_ + u_ * hu_ + v_ * hv_ - w_ * hw_))
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130 {
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131 points.push_back(p);
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132 }
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133
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134 if (GeometryToolbox::IntersectPlaneAndSegment
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135 (p, normal, d,
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136 c_ - u_ * hu_ - v_ * hv_ + w_ * hw_,
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137 c_ - u_ * hu_ + v_ * hv_ + w_ * hw_))
140
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138 {
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139 points.push_back(p);
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140 }
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141
151
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142 if (GeometryToolbox::IntersectPlaneAndSegment
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143 (p, normal, d,
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144 c_ + u_ * hu_ - v_ * hv_ + w_ * hw_,
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145 c_ + u_ * hu_ + v_ * hv_ + w_ * hw_))
140
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146 {
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147 points.push_back(p);
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148 }
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149
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150 // Z-aligned edges
151
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151 if (GeometryToolbox::IntersectPlaneAndSegment
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152 (p, normal, d,
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153 c_ - u_ * hu_ - v_ * hv_ - w_ * hw_,
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154 c_ - u_ * hu_ - v_ * hv_ + w_ * hw_))
140
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155 {
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156 points.push_back(p);
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157 }
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158
151
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159 if (GeometryToolbox::IntersectPlaneAndSegment
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160 (p, normal, d,
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161 c_ + u_ * hu_ - v_ * hv_ - w_ * hw_,
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162 c_ + u_ * hu_ - v_ * hv_ + w_ * hw_))
140
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163 {
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164 points.push_back(p);
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165 }
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166
151
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167 if (GeometryToolbox::IntersectPlaneAndSegment
c5044bbfc303 CoordinateSystem3D::IntersectSegment()
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diff changeset
168 (p, normal, d,
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169 c_ - u_ * hu_ + v_ * hv_ - w_ * hw_,
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170 c_ - u_ * hu_ + v_ * hv_ + w_ * hw_))
140
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171 {
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172 points.push_back(p);
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173 }
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174
151
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175 if (GeometryToolbox::IntersectPlaneAndSegment
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176 (p, normal, d,
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177 c_ + u_ * hu_ + v_ * hv_ - w_ * hw_,
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178 c_ + u_ * hu_ + v_ * hv_ + w_ * hw_))
140
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179 {
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180 points.push_back(p);
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181 }
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182
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183 return true;
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184 }
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185 }
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186
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187
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188 bool OrientedVolumeBoundingBox::HasIntersection(std::vector<Vector>& points,
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189 const CoordinateSystem3D& plane) const
140
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190 {
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191 // From the vector equation of a 3D plane (specified by origin
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192 // and normal), to the general equation of a 3D plane (which
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193 // looses information about the origin of the coordinate system)
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194 const Vector& normal = plane.GetNormal();
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195 const Vector& origin = plane.GetOrigin();
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196 double d = -(normal[0] * origin[0] + normal[1] * origin[1] + normal[2] * origin[2]);
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197
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198 return HasIntersectionWithPlane(points, normal, d);
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199 }
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200
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201
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202 bool OrientedVolumeBoundingBox::Contains(const Vector& p) const
140
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203 {
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204 assert(p.size() == 3);
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205
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206 const Vector q = p - c_;
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207
2115530d3703 OrientedBoundingBox
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208 return (fabs(boost::numeric::ublas::inner_prod(q, u_)) <= hu_ &&
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209 fabs(boost::numeric::ublas::inner_prod(q, v_)) <= hv_ &&
2115530d3703 OrientedBoundingBox
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210 fabs(boost::numeric::ublas::inner_prod(q, w_)) <= hw_);
2115530d3703 OrientedBoundingBox
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211 }
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212
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213
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diff changeset
214 void OrientedVolumeBoundingBox::FromInternalCoordinates(Vector& target,
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diff changeset
215 double x,
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diff changeset
216 double y,
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217 double z) const
140
2115530d3703 OrientedBoundingBox
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218 {
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219 target = (c_ +
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diff changeset
220 u_ * 2.0 * hu_ * (x - 0.5) +
2115530d3703 OrientedBoundingBox
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parents:
diff changeset
221 v_ * 2.0 * hv_ * (y - 0.5) +
2115530d3703 OrientedBoundingBox
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diff changeset
222 w_ * 2.0 * hw_ * (z - 0.5));
2115530d3703 OrientedBoundingBox
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223 }
2115530d3703 OrientedBoundingBox
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224
2115530d3703 OrientedBoundingBox
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225
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diff changeset
226 void OrientedVolumeBoundingBox::FromInternalCoordinates(Vector& target,
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227 const Vector& source) const
140
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228 {
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229 assert(source.size() == 3);
2115530d3703 OrientedBoundingBox
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diff changeset
230 FromInternalCoordinates(target, source[0], source[1], source[2]);
2115530d3703 OrientedBoundingBox
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diff changeset
231 }
2115530d3703 OrientedBoundingBox
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232
2115530d3703 OrientedBoundingBox
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233
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diff changeset
234 void OrientedVolumeBoundingBox::ToInternalCoordinates(Vector& target,
fa5febe0f0c2 moved OrientedBoundingBox in the Volumes folder
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diff changeset
235 const Vector& source) const
140
2115530d3703 OrientedBoundingBox
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236 {
2115530d3703 OrientedBoundingBox
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237 assert(source.size() == 3);
2115530d3703 OrientedBoundingBox
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238 const Vector q = source - c_;
2115530d3703 OrientedBoundingBox
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239
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240 double x = boost::numeric::ublas::inner_prod(q, u_) / (2.0 * hu_) + 0.5;
2115530d3703 OrientedBoundingBox
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241 double y = boost::numeric::ublas::inner_prod(q, v_) / (2.0 * hv_) + 0.5;
2115530d3703 OrientedBoundingBox
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242 double z = boost::numeric::ublas::inner_prod(q, w_) / (2.0 * hw_) + 0.5;
2115530d3703 OrientedBoundingBox
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parents:
diff changeset
243
158
a053ca7fa5c6 LinearAlgebra toolbox
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parents: 151
diff changeset
244 LinearAlgebra::AssignVector(target, x, y, z);
140
2115530d3703 OrientedBoundingBox
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parents:
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245 }
146
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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parents: 140
diff changeset
246
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
247
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diff changeset
248 bool OrientedVolumeBoundingBox::ComputeExtent(Extent2D& extent,
fa5febe0f0c2 moved OrientedBoundingBox in the Volumes folder
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diff changeset
249 const CoordinateSystem3D& plane) const
146
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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parents: 140
diff changeset
250 {
1610
b7630b1a0253 ISceneLayer::GetBoundingBox() returns void
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parents: 1598
diff changeset
251 extent.Clear();
146
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
252
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
253 std::vector<Vector> points;
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
254 if (HasIntersection(points, plane))
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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parents: 140
diff changeset
255 {
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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parents: 140
diff changeset
256 for (size_t i = 0; i < points.size(); i++)
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
257 {
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
258 double x, y;
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
259 plane.ProjectPoint(x, y, points[i]);
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
260 extent.AddPoint(x, y);
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diff changeset
261 }
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
262
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
263 return true;
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
264 }
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
265 else
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
266 {
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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diff changeset
267 return false;
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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parents: 140
diff changeset
268 }
fb7d602e7025 OrientedBoundingBox::ComputeExtent
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parents: 140
diff changeset
269 }
140
2115530d3703 OrientedBoundingBox
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diff changeset
270 }