Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Volumes/OrientedVolumeBoundingBox.cpp @ 1953:0661115af939 deep-learning
first successful application of deep learning
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 16 Aug 2022 15:05:51 +0200 |
parents | 7053b8a0aaec |
children | 07964689cb0b |
rev | line source |
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140 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
140 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
140 | 10 * as published by the Free Software Foundation, either version 3 of |
11 * the License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
140 | 21 **/ |
22 | |
23 | |
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24 #include "OrientedVolumeBoundingBox.h" |
140 | 25 |
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26 #include "../Toolbox/GeometryToolbox.h" |
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27 #include "ImageBuffer3D.h" |
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28 |
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29 #include <OrthancException.h> |
140 | 30 |
31 #include <cassert> | |
32 | |
33 namespace OrthancStone | |
34 { | |
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35 OrientedVolumeBoundingBox::OrientedVolumeBoundingBox(const VolumeImageGeometry& geometry) |
140 | 36 { |
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37 unsigned int n = geometry.GetDepth(); |
140 | 38 if (n < 1) |
39 { | |
40 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize); | |
41 } | |
42 | |
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43 Vector dim = geometry.GetVoxelDimensions(VolumeProjection_Axial); |
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44 |
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45 u_ = geometry.GetAxialGeometry().GetAxisX(); |
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46 v_ = geometry.GetAxialGeometry().GetAxisY(); |
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47 w_ = geometry.GetAxialGeometry().GetNormal(); |
140 | 48 |
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49 hu_ = static_cast<double>(geometry.GetWidth() * dim[0] / 2.0); |
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50 hv_ = static_cast<double>(geometry.GetHeight() * dim[1] / 2.0); |
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51 hw_ = static_cast<double>(geometry.GetDepth() * dim[2] / 2.0); |
140 | 52 |
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53 c_ = (geometry.GetAxialGeometry().GetOrigin() + |
140 | 54 (hu_ - dim[0] / 2.0) * u_ + |
55 (hv_ - dim[1] / 2.0) * v_ + | |
56 (hw_ - dim[2] / 2.0) * w_); | |
57 } | |
58 | |
59 | |
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60 bool OrientedVolumeBoundingBox::HasIntersectionWithPlane(std::vector<Vector>& points, |
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61 const Vector& normal, |
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62 double d) const |
140 | 63 { |
64 assert(normal.size() == 3); | |
65 | |
66 double r = (hu_ * fabs(boost::numeric::ublas::inner_prod(normal, u_)) + | |
67 hv_ * fabs(boost::numeric::ublas::inner_prod(normal, v_)) + | |
68 hw_ * fabs(boost::numeric::ublas::inner_prod(normal, w_))); | |
69 | |
70 double s = boost::numeric::ublas::inner_prod(normal, c_) + d; | |
71 | |
72 if (fabs(s) >= r) | |
73 { | |
74 // No intersection, or intersection is reduced to a single point | |
75 return false; | |
76 } | |
77 else | |
78 { | |
79 Vector p; | |
80 | |
81 // Loop over all the 12 edges (segments) of the oriented | |
82 // bounding box, and check whether they intersect the plane | |
83 | |
84 // X-aligned edges | |
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85 if (GeometryToolbox::IntersectPlaneAndSegment |
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86 (p, normal, d, |
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87 c_ - u_ * hu_ - v_ * hv_ - w_ * hw_, |
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88 c_ + u_ * hu_ - v_ * hv_ - w_ * hw_)) |
140 | 89 { |
90 points.push_back(p); | |
91 } | |
92 | |
151
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93 if (GeometryToolbox::IntersectPlaneAndSegment |
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94 (p, normal, d, |
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95 c_ - u_ * hu_ + v_ * hv_ - w_ * hw_, |
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96 c_ + u_ * hu_ + v_ * hv_ - w_ * hw_)) |
140 | 97 { |
98 points.push_back(p); | |
99 } | |
100 | |
151
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101 if (GeometryToolbox::IntersectPlaneAndSegment |
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102 (p, normal, d, |
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103 c_ - u_ * hu_ - v_ * hv_ + w_ * hw_, |
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104 c_ + u_ * hu_ - v_ * hv_ + w_ * hw_)) |
140 | 105 { |
106 points.push_back(p); | |
107 } | |
108 | |
151
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109 if (GeometryToolbox::IntersectPlaneAndSegment |
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110 (p, normal, d, |
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111 c_ - u_ * hu_ + v_ * hv_ + w_ * hw_, |
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112 c_ + u_ * hu_ + v_ * hv_ + w_ * hw_)) |
140 | 113 { |
114 points.push_back(p); | |
115 } | |
116 | |
117 // Y-aligned edges | |
151
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118 if (GeometryToolbox::IntersectPlaneAndSegment |
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119 (p, normal, d, |
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120 c_ - u_ * hu_ - v_ * hv_ - w_ * hw_, |
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121 c_ - u_ * hu_ + v_ * hv_ - w_ * hw_)) |
140 | 122 { |
123 points.push_back(p); | |
124 } | |
125 | |
151
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126 if (GeometryToolbox::IntersectPlaneAndSegment |
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127 (p, normal, d, |
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128 c_ + u_ * hu_ - v_ * hv_ - w_ * hw_, |
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129 c_ + u_ * hu_ + v_ * hv_ - w_ * hw_)) |
140 | 130 { |
131 points.push_back(p); | |
132 } | |
133 | |
151
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134 if (GeometryToolbox::IntersectPlaneAndSegment |
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135 (p, normal, d, |
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136 c_ - u_ * hu_ - v_ * hv_ + w_ * hw_, |
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137 c_ - u_ * hu_ + v_ * hv_ + w_ * hw_)) |
140 | 138 { |
139 points.push_back(p); | |
140 } | |
141 | |
151
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142 if (GeometryToolbox::IntersectPlaneAndSegment |
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143 (p, normal, d, |
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144 c_ + u_ * hu_ - v_ * hv_ + w_ * hw_, |
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145 c_ + u_ * hu_ + v_ * hv_ + w_ * hw_)) |
140 | 146 { |
147 points.push_back(p); | |
148 } | |
149 | |
150 // Z-aligned edges | |
151
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151 if (GeometryToolbox::IntersectPlaneAndSegment |
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152 (p, normal, d, |
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153 c_ - u_ * hu_ - v_ * hv_ - w_ * hw_, |
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154 c_ - u_ * hu_ - v_ * hv_ + w_ * hw_)) |
140 | 155 { |
156 points.push_back(p); | |
157 } | |
158 | |
151
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159 if (GeometryToolbox::IntersectPlaneAndSegment |
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160 (p, normal, d, |
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161 c_ + u_ * hu_ - v_ * hv_ - w_ * hw_, |
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162 c_ + u_ * hu_ - v_ * hv_ + w_ * hw_)) |
140 | 163 { |
164 points.push_back(p); | |
165 } | |
166 | |
151
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167 if (GeometryToolbox::IntersectPlaneAndSegment |
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168 (p, normal, d, |
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169 c_ - u_ * hu_ + v_ * hv_ - w_ * hw_, |
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170 c_ - u_ * hu_ + v_ * hv_ + w_ * hw_)) |
140 | 171 { |
172 points.push_back(p); | |
173 } | |
174 | |
151
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175 if (GeometryToolbox::IntersectPlaneAndSegment |
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176 (p, normal, d, |
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177 c_ + u_ * hu_ + v_ * hv_ - w_ * hw_, |
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178 c_ + u_ * hu_ + v_ * hv_ + w_ * hw_)) |
140 | 179 { |
180 points.push_back(p); | |
181 } | |
182 | |
183 return true; | |
184 } | |
185 } | |
186 | |
187 | |
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188 bool OrientedVolumeBoundingBox::HasIntersection(std::vector<Vector>& points, |
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189 const CoordinateSystem3D& plane) const |
140 | 190 { |
191 // From the vector equation of a 3D plane (specified by origin | |
192 // and normal), to the general equation of a 3D plane (which | |
193 // looses information about the origin of the coordinate system) | |
194 const Vector& normal = plane.GetNormal(); | |
195 const Vector& origin = plane.GetOrigin(); | |
196 double d = -(normal[0] * origin[0] + normal[1] * origin[1] + normal[2] * origin[2]); | |
197 | |
198 return HasIntersectionWithPlane(points, normal, d); | |
199 } | |
200 | |
201 | |
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202 bool OrientedVolumeBoundingBox::Contains(const Vector& p) const |
140 | 203 { |
204 assert(p.size() == 3); | |
205 | |
206 const Vector q = p - c_; | |
207 | |
208 return (fabs(boost::numeric::ublas::inner_prod(q, u_)) <= hu_ && | |
209 fabs(boost::numeric::ublas::inner_prod(q, v_)) <= hv_ && | |
210 fabs(boost::numeric::ublas::inner_prod(q, w_)) <= hw_); | |
211 } | |
212 | |
213 | |
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214 void OrientedVolumeBoundingBox::FromInternalCoordinates(Vector& target, |
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215 double x, |
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216 double y, |
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217 double z) const |
140 | 218 { |
219 target = (c_ + | |
220 u_ * 2.0 * hu_ * (x - 0.5) + | |
221 v_ * 2.0 * hv_ * (y - 0.5) + | |
222 w_ * 2.0 * hw_ * (z - 0.5)); | |
223 } | |
224 | |
225 | |
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226 void OrientedVolumeBoundingBox::FromInternalCoordinates(Vector& target, |
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227 const Vector& source) const |
140 | 228 { |
229 assert(source.size() == 3); | |
230 FromInternalCoordinates(target, source[0], source[1], source[2]); | |
231 } | |
232 | |
233 | |
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234 void OrientedVolumeBoundingBox::ToInternalCoordinates(Vector& target, |
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235 const Vector& source) const |
140 | 236 { |
237 assert(source.size() == 3); | |
238 const Vector q = source - c_; | |
239 | |
240 double x = boost::numeric::ublas::inner_prod(q, u_) / (2.0 * hu_) + 0.5; | |
241 double y = boost::numeric::ublas::inner_prod(q, v_) / (2.0 * hv_) + 0.5; | |
242 double z = boost::numeric::ublas::inner_prod(q, w_) / (2.0 * hw_) + 0.5; | |
243 | |
158
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244 LinearAlgebra::AssignVector(target, x, y, z); |
140 | 245 } |
146
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246 |
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247 |
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248 bool OrientedVolumeBoundingBox::ComputeExtent(Extent2D& extent, |
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249 const CoordinateSystem3D& plane) const |
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250 { |
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251 extent.Clear(); |
146
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252 |
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253 std::vector<Vector> points; |
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254 if (HasIntersection(points, plane)) |
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255 { |
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256 for (size_t i = 0; i < points.size(); i++) |
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257 { |
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258 double x, y; |
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259 plane.ProjectPoint(x, y, points[i]); |
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260 extent.AddPoint(x, y); |
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261 } |
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262 |
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263 return true; |
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264 } |
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265 else |
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266 { |
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267 return false; |
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268 } |
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269 } |
140 | 270 } |