Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/Slice.cpp @ 293:017044be141b am-2

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
renaming
author am@osimis.io
date Thu, 30 Aug 2018 17:15:22 +0200
parents 5412adf19980
children 3a4ca166fafa
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
135
e2fe9352f240 upgrade to year 2018
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 121
diff changeset
5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * the License, or (at your option) any later version.
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * Affero General Public License for more details.
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 *
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #include "Slice.h"
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
194
7a031ac16b2d rename Enumerations.h to StoneEnumerations.h to avoid clashes with Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 174
diff changeset
24 #include "../StoneEnumerations.h"
159
0a73d76333db populating LinearAlgebra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 158
diff changeset
25 #include "GeometryToolbox.h"
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
26
212
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
27 #include <Core/Logging.h>
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
28 #include <Core/OrthancException.h>
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
29 #include <Core/Toolbox.h>
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
30
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
31 #include <boost/lexical_cast.hpp>
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 namespace OrthancStone
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 {
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
35 static bool ParseDouble(double& target,
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
36 const std::string& source)
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
37 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
38 try
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
39 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
40 target = boost::lexical_cast<double>(source);
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
41 return true;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
42 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
43 catch (boost::bad_lexical_cast&)
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
44 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
45 return false;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
46 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
47 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
48
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
49 bool Slice::ComputeRTDoseGeometry(const Orthanc::DicomMap& dataset,
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
50 unsigned int frame)
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
51 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
52 // http://dicom.nema.org/medical/Dicom/2016a/output/chtml/part03/sect_C.8.8.3.2.html
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
53
174
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
54 {
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
55 std::string increment;
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
56
174
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
57 if (dataset.CopyToString(increment, Orthanc::DICOM_TAG_FRAME_INCREMENT_POINTER, false))
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
58 {
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
59 Orthanc::Toolbox::ToUpperCase(increment);
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
60 if (increment != "3004,000C") // This is the "Grid Frame Offset Vector" tag
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
61 {
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
62 LOG(ERROR) << "Bad value for the \"FrameIncrementPointer\" tag";
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
63 return false;
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
64 }
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
65 }
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
66 }
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
67
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
68 std::string offsetTag;
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
69
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
70 if (!dataset.CopyToString(offsetTag, Orthanc::DICOM_TAG_GRID_FRAME_OFFSET_VECTOR, false) ||
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
71 offsetTag.empty())
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
72 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
73 LOG(ERROR) << "Cannot read the \"GridFrameOffsetVector\" tag, check you are using Orthanc >= 1.3.1";
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
74 return false;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
75 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
76
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
77 std::vector<std::string> offsets;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
78 Orthanc::Toolbox::TokenizeString(offsets, offsetTag, '\\');
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
79
120
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
80 if (frameCount_ <= 1 ||
174
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
81 offsets.size() < frameCount_ ||
a7674c0ae4ac fix captain rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 159
diff changeset
82 offsets.size() < 2 ||
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
83 frame >= frameCount_)
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
84 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
85 LOG(ERROR) << "No information about the 3D location of some slice(s) in a RT DOSE";
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
86 return false;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
87 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
88
120
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
89 double offset0, offset1, z;
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
90
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
91 if (!ParseDouble(offset0, offsets[0]) ||
120
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
92 !ParseDouble(offset1, offsets[1]) ||
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
93 !ParseDouble(z, offsets[frame]))
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
94 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
95 LOG(ERROR) << "Invalid syntax";
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
96 return false;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
97 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
98
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
99 if (!LinearAlgebra::IsCloseToZero(offset0))
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
100 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
101 LOG(ERROR) << "Invalid syntax";
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
102 return false;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
103 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
104
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
105 geometry_ = CoordinateSystem3D(geometry_.GetOrigin() + z * geometry_.GetNormal(),
120
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
106 //+ 650 * geometry_.GetAxisX(),
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
107 geometry_.GetAxisX(),
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
108 geometry_.GetAxisY());
120
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
109
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
110 thickness_ = offset1 - offset0;
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
111 if (thickness_ < 0)
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
112 {
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
113 thickness_ = -thickness_;
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
114 }
063f7f3d9f14 fix 3d locations of the doses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 119
diff changeset
115
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
116 return true;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
117 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
118
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
119
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
120 bool Slice::ParseOrthancFrame(const Orthanc::DicomMap& dataset,
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 const std::string& instanceId,
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 unsigned int frame)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 {
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
124 orthancInstanceId_ = instanceId;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
125 frame_ = frame;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
126 type_ = Type_OrthancDecodableFrame;
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
127 imageInformation_.reset(new Orthanc::DicomImageInformation(dataset));
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
128
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
129 if (!dataset.CopyToString(sopClassUid_, Orthanc::DICOM_TAG_SOP_CLASS_UID, false) ||
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
130 sopClassUid_.empty())
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 {
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
132 LOG(ERROR) << "Instance without a SOP class UID";
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
133 return false;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
134 }
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
135
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
136 if (!dataset.ParseUnsignedInteger32(frameCount_, Orthanc::DICOM_TAG_NUMBER_OF_FRAMES))
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
137 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
138 frameCount_ = 1; // Assume instance with one frame
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
141 if (frame >= frameCount_)
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 return false;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
146 if (!dataset.ParseUnsignedInteger32(width_, Orthanc::DICOM_TAG_COLUMNS) ||
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
147 !dataset.ParseUnsignedInteger32(height_, Orthanc::DICOM_TAG_ROWS))
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 {
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
149 return false;
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
152 thickness_ = 100.0 * std::numeric_limits<double>::epsilon();
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
153
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
154 std::string tmp;
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
155 if (dataset.CopyToString(tmp, Orthanc::DICOM_TAG_SLICE_THICKNESS, false))
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
156 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
157 if (!tmp.empty() &&
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
158 !ParseDouble(thickness_, tmp))
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
159 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
160 return false; // Syntax error
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
161 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
162 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
163
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
164 converter_.ReadParameters(dataset);
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
165
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166 GeometryToolbox::GetPixelSpacing(pixelSpacingX_, pixelSpacingY_, dataset);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
167
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
168 std::string position, orientation;
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
169 if (dataset.CopyToString(position, Orthanc::DICOM_TAG_IMAGE_POSITION_PATIENT, false) &&
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
170 dataset.CopyToString(orientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT, false))
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 {
110
53025eecbc95 renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 102
diff changeset
172 geometry_ = CoordinateSystem3D(position, orientation);
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
173
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
174 bool ok = true;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
175 SopClassUid tmp;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
176
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
177 if (StringToSopClassUid(tmp, sopClassUid_))
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
178 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
179 switch (tmp)
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
180 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
181 case SopClassUid_RTDose:
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
182 type_ = Type_OrthancRawFrame;
118
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 117
diff changeset
183 ok = ComputeRTDoseGeometry(dataset, frame);
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
184 break;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
185
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
186 default:
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
187 break;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
188 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
189 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
190
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
191 if (!ok)
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
192 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
193 LOG(ERROR) << "Cannot deduce the 3D location of frame " << frame
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
194 << " in instance " << instanceId << ", whose SOP class UID is: " << sopClassUid_;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
195 return false;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
196 }
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
197 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
199 return true;
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203 const std::string Slice::GetOrthancInstanceId() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 {
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
205 if (type_ == Type_OrthancDecodableFrame ||
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
206 type_ == Type_OrthancRawFrame)
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
207 {
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
208 return orthancInstanceId_;
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
209 }
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
210 else
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
117
42c05a3baee3 loading multi-frame instances as 3D volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
213 }
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 unsigned int Slice::GetFrame() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
220 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
224 return frame_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
225 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
226
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227
110
53025eecbc95 renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 102
diff changeset
228 const CoordinateSystem3D& Slice::GetGeometry() const
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
229 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
230 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
232 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 return geometry_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239 double Slice::GetThickness() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
240 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
241 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246 return thickness_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 double Slice::GetPixelSpacingX() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 return pixelSpacingX_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 double Slice::GetPixelSpacingY() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 return pixelSpacingY_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 unsigned int Slice::GetWidth() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 return width_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 unsigned int Slice::GetHeight() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 return height_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 const DicomFrameConverter& Slice::GetConverter() const
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 if (type_ == Type_Invalid)
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 {
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 }
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 return converter_;
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 }
89
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
303
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
304
110
53025eecbc95 renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 102
diff changeset
305 bool Slice::ContainsPlane(const CoordinateSystem3D& plane) const
89
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
306 {
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
307 if (type_ == Type_Invalid)
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
308 {
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
309 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
310 }
101
af312ce4fe59 support of 3D swapping of the normal
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
311
af312ce4fe59 support of 3D swapping of the normal
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
312 bool opposite;
af312ce4fe59 support of 3D swapping of the normal
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
313 return (GeometryToolbox::IsParallelOrOpposite(opposite,
af312ce4fe59 support of 3D swapping of the normal
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
314 GetGeometry().GetNormal(),
af312ce4fe59 support of 3D swapping of the normal
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
315 plane.GetNormal()) &&
158
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
316 LinearAlgebra::IsNear(GetGeometry().ProjectAlongNormal(GetGeometry().GetOrigin()),
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
317 GetGeometry().ProjectAlongNormal(plane.GetOrigin()),
a053ca7fa5c6 LinearAlgebra toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
318 thickness_ / 2.0));
89
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
319 }
102
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
320
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
321
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
322 void Slice::GetExtent(std::vector<Vector>& points) const
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
323 {
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
324 double sx = GetPixelSpacingX();
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
325 double sy = GetPixelSpacingY();
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
326 double w = static_cast<double>(GetWidth());
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
327 double h = static_cast<double>(GetHeight());
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
328
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
329 points.clear();
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
330 points.push_back(GetGeometry().MapSliceToWorldCoordinates(-0.5 * sx, -0.5 * sy));
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
331 points.push_back(GetGeometry().MapSliceToWorldCoordinates((w - 0.5) * sx, -0.5 * sy));
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
332 points.push_back(GetGeometry().MapSliceToWorldCoordinates(-0.5 * sx, (h - 0.5) * sy));
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
333 points.push_back(GetGeometry().MapSliceToWorldCoordinates((w - 0.5) * sx, (h - 0.5) * sy));
fcec0ab44054 display volumes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 101
diff changeset
334 }
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
335
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
336
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
337 const Orthanc::DicomImageInformation& Slice::GetImageInformation() const
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
338 {
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
339 if (imageInformation_.get() == NULL)
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
340 {
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
341 // Only available if constructing the "Slice" object with a DICOM map
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
342 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
343 }
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
344 else
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
345 {
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
346 return *imageInformation_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
347 }
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 118
diff changeset
348 }
73
ffa6dded91bd reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 }