Mercurial > hg > orthanc-ohif

annotate Sources/Plugin.cpp @ 4:c34ecc350b32

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 15 Jun 2023 22:21:46 +0200
parents fdb8c6c420d0
children 8c1fe0ca24f5
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1 /**
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2 * SPDX-FileCopyrightText: 2023 Sebastien Jodogne, UCLouvain, Belgium
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3 * SPDX-License-Identifier: GPL-3.0-or-later
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4 */
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5
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6 /**
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7 * OHIF plugin for Orthanc
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8 * Copyright (C) 2023 Sebastien Jodogne, UCLouvain, Belgium
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9 *
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10 * This program is free software: you can redistribute it and/or
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11 * modify it under the terms of the GNU General Public License as
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12 * published by the Free Software Foundation, either version 3 of the
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13 * License, or (at your option) any later version.
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14 *
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15 * This program is distributed in the hope that it will be useful, but
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 * General Public License for more details.
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19 *
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20 * You should have received a copy of the GNU General Public License
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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22 **/
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23
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24
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25 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
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26
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27 #include <DicomFormat/DicomMap.h>
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28 #include <Logging.h>
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29 #include <SerializationToolbox.h>
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30 #include <SystemToolbox.h>
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31 #include <Toolbox.h>
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32 #include <Compression/GzipCompressor.h>
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33
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34 #include <EmbeddedResources.h>
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35
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36 #include <boost/thread/shared_mutex.hpp>
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37
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38
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39 // Reference: https://v3-docs.ohif.org/configuration/dataSources/dicom-json
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40
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41 enum DataType
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42 {
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43 DataType_String,
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44 DataType_Integer,
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45 DataType_Float,
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46 DataType_ListOfFloats,
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47 DataType_ListOfStrings,
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48 DataType_None
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49 };
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50
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51 class TagInformation
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52 {
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53 private:
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54 DataType type_;
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55 std::string name_;
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56
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57 public:
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58 TagInformation() :
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59 type_(DataType_None)
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60 {
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61 }
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62
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63 TagInformation(DataType type,
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64 const std::string& name) :
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65 type_(type),
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66 name_(name)
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67 {
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68 }
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69
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70 DataType GetType() const
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71 {
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72 return type_;
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73 }
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74
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75 const std::string& GetName() const
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76 {
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77 return name_;
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78 }
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79
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80 bool operator== (const TagInformation& other) const
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81 {
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82 return (type_ == other.type_ &&
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83 name_ == other.name_);
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84 }
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85 };
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86
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87 typedef std::map<Orthanc::DicomTag, TagInformation> TagsDictionary;
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88
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89 static TagsDictionary ohifStudyTags_, ohifSeriesTags_, ohifInstanceTags_, allTags_;
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90
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91 static void InitializeOhifTags()
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92 {
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93 ohifStudyTags_[Orthanc::DICOM_TAG_STUDY_INSTANCE_UID] = TagInformation(DataType_String, "StudyInstanceUID");
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94 ohifStudyTags_[Orthanc::DICOM_TAG_STUDY_DATE] = TagInformation(DataType_String, "StudyDate");
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95 ohifStudyTags_[Orthanc::DICOM_TAG_STUDY_TIME] = TagInformation(DataType_String, "StudyTime");
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96 ohifStudyTags_[Orthanc::DICOM_TAG_PATIENT_NAME] = TagInformation(DataType_String, "PatientName");
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97 ohifStudyTags_[Orthanc::DICOM_TAG_PATIENT_ID] = TagInformation(DataType_String, "PatientID");
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98 ohifStudyTags_[Orthanc::DICOM_TAG_ACCESSION_NUMBER] = TagInformation(DataType_String, "AccessionNumber");
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99 ohifStudyTags_[Orthanc::DicomTag(0x0010, 0x1010)] = TagInformation(DataType_String, "PatientAge");
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100 ohifStudyTags_[Orthanc::DICOM_TAG_PATIENT_SEX] = TagInformation(DataType_String, "PatientSex");
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101
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102 ohifSeriesTags_[Orthanc::DICOM_TAG_SERIES_INSTANCE_UID] = TagInformation(DataType_String, "SeriesInstanceUID");
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103 ohifSeriesTags_[Orthanc::DICOM_TAG_SERIES_NUMBER] = TagInformation(DataType_Integer, "SeriesNumber");
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104 ohifSeriesTags_[Orthanc::DICOM_TAG_MODALITY] = TagInformation(DataType_String, "Modality");
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105 ohifSeriesTags_[Orthanc::DICOM_TAG_SLICE_THICKNESS] = TagInformation(DataType_Float, "SliceThickness");
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106
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107 ohifInstanceTags_[Orthanc::DICOM_TAG_COLUMNS] = TagInformation(DataType_Integer, "Columns");
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108 ohifInstanceTags_[Orthanc::DICOM_TAG_ROWS] = TagInformation(DataType_Integer, "Rows");
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109 ohifInstanceTags_[Orthanc::DICOM_TAG_INSTANCE_NUMBER] = TagInformation(DataType_Integer, "InstanceNumber");
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110 ohifInstanceTags_[Orthanc::DICOM_TAG_SOP_CLASS_UID] = TagInformation(DataType_String, "SOPClassUID");
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111 ohifInstanceTags_[Orthanc::DICOM_TAG_PHOTOMETRIC_INTERPRETATION] = TagInformation(DataType_String, "PhotometricInterpretation");
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112 ohifInstanceTags_[Orthanc::DICOM_TAG_BITS_ALLOCATED] = TagInformation(DataType_Integer, "BitsAllocated");
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113 ohifInstanceTags_[Orthanc::DICOM_TAG_BITS_STORED] = TagInformation(DataType_Integer, "BitsStored");
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114 ohifInstanceTags_[Orthanc::DICOM_TAG_PIXEL_REPRESENTATION] = TagInformation(DataType_Integer, "PixelRepresentation");
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115 ohifInstanceTags_[Orthanc::DICOM_TAG_SAMPLES_PER_PIXEL] = TagInformation(DataType_Integer, "SamplesPerPixel");
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116 ohifInstanceTags_[Orthanc::DICOM_TAG_PIXEL_SPACING] = TagInformation(DataType_ListOfFloats, "PixelSpacing");
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117 ohifInstanceTags_[Orthanc::DICOM_TAG_HIGH_BIT] = TagInformation(DataType_Integer, "HighBit");
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118 ohifInstanceTags_[Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT] = TagInformation(DataType_ListOfFloats, "ImageOrientationPatient");
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119 ohifInstanceTags_[Orthanc::DICOM_TAG_IMAGE_POSITION_PATIENT] = TagInformation(DataType_ListOfFloats, "ImagePositionPatient");
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120 ohifInstanceTags_[Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID] = TagInformation(DataType_String, "FrameOfReferenceUID");
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121 ohifInstanceTags_[Orthanc::DicomTag(0x0008, 0x0008)] = TagInformation(DataType_ListOfStrings, "ImageType");
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122 ohifInstanceTags_[Orthanc::DICOM_TAG_MODALITY] = TagInformation(DataType_String, "Modality");
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123 ohifInstanceTags_[Orthanc::DICOM_TAG_SOP_INSTANCE_UID] = TagInformation(DataType_String, "SOPInstanceUID");
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124 ohifInstanceTags_[Orthanc::DICOM_TAG_SERIES_INSTANCE_UID] = TagInformation(DataType_String, "SeriesInstanceUID");
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125 ohifInstanceTags_[Orthanc::DICOM_TAG_STUDY_INSTANCE_UID] = TagInformation(DataType_String, "StudyInstanceUID");
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126 ohifInstanceTags_[Orthanc::DICOM_TAG_WINDOW_CENTER] = TagInformation(DataType_Float, "WindowCenter");
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127 ohifInstanceTags_[Orthanc::DICOM_TAG_WINDOW_WIDTH] = TagInformation(DataType_Float, "WindowWidth");
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128 ohifInstanceTags_[Orthanc::DICOM_TAG_SERIES_DATE] = TagInformation(DataType_String, "SeriesDate");
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129
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130 for (TagsDictionary::const_iterator it = ohifStudyTags_.begin(); it != ohifStudyTags_.end(); ++it)
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131 {
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132 assert(allTags_.find(it->first) == allTags_.end() ||
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133 allTags_[it->first] == it->second);
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134 allTags_[it->first] = it->second;
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135 }
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136
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137 for (TagsDictionary::const_iterator it = ohifSeriesTags_.begin(); it != ohifSeriesTags_.end(); ++it)
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138 {
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139 assert(allTags_.find(it->first) == allTags_.end() ||
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140 allTags_[it->first] == it->second);
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141 allTags_[it->first] = it->second;
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142 }
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143
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144 for (TagsDictionary::const_iterator it = ohifInstanceTags_.begin(); it != ohifInstanceTags_.end(); ++it)
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145 {
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146 assert(allTags_.find(it->first) == allTags_.end() ||
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147 allTags_[it->first] == it->second);
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148 allTags_[it->first] = it->second;
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149 }
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150 }
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151
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152
0
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153 // Forward declaration
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154 void ReadStaticAsset(std::string& target,
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155 const std::string& path);
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156
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157
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158 /**
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159 * As the OHIF static assets are gzipped by the "EmbedStaticAssets.py"
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160 * script, we use a cache to maintain the uncompressed assets in order
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161 * to avoid multiple gzip decodings.
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162 **/
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163 class ResourcesCache : public boost::noncopyable
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164 {
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165 private:
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166 typedef std::map<std::string, std::string*> Content;
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167
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168 boost::shared_mutex mutex_;
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169 Content content_;
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170
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171 public:
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172 ~ResourcesCache()
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173 {
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174 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
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175 {
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176 assert(it->second != NULL);
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177 delete it->second;
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178 }
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179 }
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180
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181 void Answer(OrthancPluginContext* context,
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182 OrthancPluginRestOutput* output,
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183 const std::string& path)
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184 {
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185 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
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186
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187 {
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188 // Check whether the cache already contains the resource
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189 boost::shared_lock<boost::shared_mutex> lock(mutex_);
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190
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191 Content::const_iterator found = content_.find(path);
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192
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193 if (found != content_.end())
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194 {
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195 assert(found->second != NULL);
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196 OrthancPluginAnswerBuffer(context, output, found->second->c_str(), found->second->size(), mime.c_str());
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197 return;
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198 }
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199 }
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200
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201 // This resource has not been cached yet
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202
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203 std::unique_ptr<std::string> item(new std::string);
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204 ReadStaticAsset(*item, path);
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205 OrthancPluginAnswerBuffer(context, output, item->c_str(), item->size(), mime.c_str());
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206
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207 {
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208 // Store the resource into the cache
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209 boost::unique_lock<boost::shared_mutex> lock(mutex_);
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210
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211 if (content_.find(path) == content_.end())
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212 {
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213 content_[path] = item.release();
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214 }
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215 }
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216 }
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217 };
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218
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219
3
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220 static void GetOhifDicomTags(Json::Value& target,
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221 const std::string& instanceId)
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222 {
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223 Json::Value source;
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224 if (!OrthancPlugins::RestApiGet(source, "/instances/" + instanceId + "/tags?short", false))
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225 {
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226 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
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227 }
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228
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229 if (source.type() != Json::objectValue)
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230 {
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231 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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232 }
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233
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234 for (TagsDictionary::const_iterator it = allTags_.begin(); it != allTags_.end(); ++it)
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235 {
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236 const std::string tag = it->first.Format();
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237
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238 if (source.isMember(tag))
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239 {
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240 const Json::Value& value = source[tag];
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241
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242 /**
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243 * The cases below derive from "Toolbox::SimplifyDicomAsJson()"
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244 * with "DicomToJsonFormat_Short", which is invoked by the REST
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245 * API call to "/instances/.../tags?short".
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246 **/
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247
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248 switch (value.type())
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249 {
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250 case Json::nullValue:
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251 break;
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252
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253 case Json::arrayValue:
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254 // This should never happen, as this would correspond to a sequence
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255 break;
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256
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257 case Json::stringValue:
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258 {
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259 switch (it->second.GetType())
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260 {
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261 case DataType_String:
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262 target[tag] = value;
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263 break;
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264
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265 case DataType_Integer:
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266 {
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267 int32_t v;
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268 if (Orthanc::SerializationToolbox::ParseInteger32(v, value.asString()))
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269 {
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270 target[tag] = v;
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271 }
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272 break;
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273 }
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274
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275 case DataType_Float:
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276 {
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277 float v;
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278 if (Orthanc::SerializationToolbox::ParseFloat(v, value.asString()))
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279 {
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280 target[tag] = v;
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281 }
3
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282 break;
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283 }
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284
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285 case DataType_ListOfStrings:
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286 {
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287 std::vector<std::string> tokens;
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288 Orthanc::Toolbox::TokenizeString(tokens, value.asString(), '\\');
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289 target[tag] = Json::arrayValue;
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290 for (size_t i = 0; i < tokens.size(); i++)
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291 {
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292 target[tag].append(tokens[i]);
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293 }
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294 break;
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295 }
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296
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297 case DataType_ListOfFloats:
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298 {
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299 std::vector<std::string> tokens;
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300 Orthanc::Toolbox::TokenizeString(tokens, value.asString(), '\\');
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301 target[tag] = Json::arrayValue;
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302 for (size_t i = 0; i < tokens.size(); i++)
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303 {
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304 float v;
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305 if (Orthanc::SerializationToolbox::ParseFloat(v, tokens[i]))
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306 {
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307 target[tag].append(v);
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308 }
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309 }
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310 break;
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311 }
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312
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313 default:
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314 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
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315 }
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316 }
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317
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318 default:
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319 // This should never happen
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320 break;
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321 }
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322 }
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323 }
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324 }
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325
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326
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327 static ResourcesCache cache_;
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328 static std::string routerBasename_;
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329
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330 void ServeFile(OrthancPluginRestOutput* output,
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331 const char* url,
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332 const OrthancPluginHttpRequest* request)
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333 {
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334 OrthancPluginContext* context = OrthancPlugins::GetGlobalContext();
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335
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336 // The next 3 HTTP headers are required to enable SharedArrayBuffer
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337 // (https://web.dev/coop-coep/)
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338 OrthancPluginSetHttpHeader(context, output, "Cross-Origin-Embedder-Policy", "require-corp");
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339 OrthancPluginSetHttpHeader(context, output, "Cross-Origin-Opener-Policy", "same-origin");
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340 OrthancPluginSetHttpHeader(context, output, "Cross-Origin-Resource-Policy", "same-origin");
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341
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342 std::string uri = request->groups[0];
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343
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344 if (uri == "app-config.js")
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345 {
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346 std::string system, user;
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347 Orthanc::EmbeddedResources::GetFileResource(system, Orthanc::EmbeddedResources::APP_CONFIG_SYSTEM);
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348 Orthanc::EmbeddedResources::GetFileResource(user, Orthanc::EmbeddedResources::APP_CONFIG_USER);
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349
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350 std::map<std::string, std::string> dictionary;
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351 dictionary["ROUTER_BASENAME"] = routerBasename_;
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352
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353 system = Orthanc::Toolbox::SubstituteVariables(system, dictionary);
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354
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355 std::string s = (user + "\n" + system);
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356 OrthancPluginAnswerBuffer(context, output, s.c_str(), s.size(), "application/json");
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357 }
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358 else if (uri == "viewer")
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359 {
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360 cache_.Answer(context, output, "index.html");
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361 }
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362 else
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363 {
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364 cache_.Answer(context, output, uri);
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365 }
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366 }
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367
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368
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369 OrthancPluginErrorCode OnChangeCallback(OrthancPluginChangeType changeType,
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370 OrthancPluginResourceType resourceType,
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371 const char* resourceId)
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372 {
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373 try
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374 {
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375 if (changeType == OrthancPluginChangeType_OrthancStarted)
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376 {
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377 /*{
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378 Json::Value v;
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379 GetOhifDicomTags(v, "54bfd747-407e46b1-ef106fdd-dc19e482-ff8dbe02");
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380 std::cout << v.toStyledString();
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381 std::string s;
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382 Orthanc::Toolbox::WriteFastJson(s, v);
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383 std::cout << s.size() << std::endl;
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384
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385 Orthanc::GzipCompressor c;
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386 std::string ss;
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387 Orthanc::IBufferCompressor::Compress(ss, c, s);
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388 std::cout << ss.size() << std::endl;
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389
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390 std::string sss;
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391 Orthanc::Toolbox::EncodeBase64(sss, ss);
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392 std::cout << sss.size() << std::endl;
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393 }*/
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394
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395 Json::Value info;
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396 if (!OrthancPlugins::RestApiGet(info, "/plugins/dicom-web", false))
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397 {
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398 throw Orthanc::OrthancException(
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399 Orthanc::ErrorCode_InternalError,
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400 "The OHIF plugin requires the DICOMweb plugin to be installed");
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401 }
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402
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403 if (info.type() != Json::objectValue ||
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404 !info.isMember("ID") ||
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405 !info.isMember("Version") ||
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406 info["ID"].type() != Json::stringValue ||
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407 info["Version"].type() != Json::stringValue ||
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408 info["ID"].asString() != "dicom-web")
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409 {
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410 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError,
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411 "The DICOMweb plugin is not properly installed");
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412 }
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413 }
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414 }
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415 catch (Orthanc::OrthancException& e)
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416 {
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417 LOG(ERROR) << "Exception: " << e.What();
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418 return static_cast<OrthancPluginErrorCode>(e.GetErrorCode());
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419 }
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420
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421 return OrthancPluginErrorCode_Success;
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422 }
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423
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424
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425 extern "C"
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426 {
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427 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
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428 {
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429 OrthancPlugins::SetGlobalContext(context);
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430
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431 /* Check the version of the Orthanc core */
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432 if (OrthancPluginCheckVersion(context) == 0)
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433 {
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434 char info[1024];
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435 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
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436 context->orthancVersion,
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437 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
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438 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
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439 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
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440 OrthancPluginLogError(context, info);
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441 return -1;
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442 }
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443
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444 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
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445 Orthanc::Logging::InitializePluginContext(context);
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446 #else
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447 Orthanc::Logging::Initialize(context);
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448 #endif
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449
3
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450 InitializeOhifTags();
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451
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452 OrthancPlugins::OrthancConfiguration configuration;
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453
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454 {
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455 OrthancPlugins::OrthancConfiguration globalConfiguration;
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456 globalConfiguration.GetSection(configuration, "OHIF");
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457 }
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458
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459 routerBasename_ = configuration.GetStringValue("RouterBasename", "/ohif");
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460
0
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461 OrthancPluginSetDescription(context, "OHIF plugin for Orthanc.");
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462
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463 OrthancPlugins::RegisterRestCallback<ServeFile>("/ohif/(.*)", true);
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464
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465 OrthancPluginRegisterOnChangeCallback(context, OnChangeCallback);
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466
0
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467 // Extend the default Orthanc Explorer with custom JavaScript for OHIF
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468 std::string explorer;
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469 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
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470 OrthancPluginExtendOrthancExplorer(context, explorer.c_str());
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471
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472 return 0;
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473 }
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474
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475
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476 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
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477 {
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478 }
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479
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480
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481 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
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482 {
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483 return "ohif";
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484 }
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485
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486
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487 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
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488 {
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489 return ORTHANC_OHIF_VERSION;
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490 }
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491 }