Mercurial > hg > orthanc-java
view Samples/FHIR/src/main/java/ImagingStudyProvider.java @ 43:678bbed285a1 default tip
improved import of JNI in cmake
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 06 Sep 2024 13:53:54 +0200 |
parents | 296798e75896 |
children |
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/** * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium * SPDX-License-Identifier: GPL-3.0-or-later **/ /** * Java plugin for Orthanc * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ import be.uclouvain.orthanc.ResourceType; import ca.uhn.fhir.rest.annotation.*; import ca.uhn.fhir.rest.param.ReferenceParam; import ca.uhn.fhir.rest.param.StringParam; import ca.uhn.fhir.rest.server.IResourceProvider; import org.hl7.fhir.r5.model.IdType; import org.hl7.fhir.r5.model.ImagingStudy; import java.util.ArrayList; import java.util.HashMap; import java.util.List; import java.util.Map; public class ImagingStudyProvider implements IResourceProvider { private IOrthancConnection orthanc; ImagingStudyProvider(IOrthancConnection orthanc) { this.orthanc = orthanc; } @Override public Class<ImagingStudy> getResourceType() { return ImagingStudy.class; } @Read public ImagingStudy getResourceById(@IdParam IdType theId) { Map<String, String> tags = new HashMap<>(); tags.put(Toolbox.TAG_STUDY_INSTANCE_UID, theId.getIdPart()); List<OrthancResource> resources = OrthancResource.find(orthanc, be.uclouvain.orthanc.ResourceType.STUDY, tags, true); if (resources.size() == 0) { return null; } else if (resources.size() > 1) { throw new RuntimeException("Too many matching resources"); } else { return resources.get(0).getFhirStudy(orthanc); } } @Search() public List<ImagingStudy> getImagingStudies(@OptionalParam(name = ImagingStudy.SP_IDENTIFIER) StringParam theIdentifier, @OptionalParam(name = ImagingStudy.SP_SUBJECT) ReferenceParam theSubject, @Offset Integer theOffset, @Count Integer theCount) { Map<String, String> tags = new HashMap<>(); if (theIdentifier != null) { tags.put(Toolbox.TAG_STUDY_INSTANCE_UID, theIdentifier.getValue()); } if (theSubject != null) { // https://hapifhir.io/hapi-fhir/docs/server_plain/rest_operations_search.html#search-parameters-resource-reference tags.put(Toolbox.TAG_PATIENT_ID, theSubject.getValue()); } final boolean caseSensitive = false; List<OrthancResource> resources; if (theOffset != null && theCount != null) { resources = OrthancResource.find(orthanc, ResourceType.STUDY, tags, caseSensitive, theOffset.intValue(), theCount.intValue()); } else if (theCount != null) { resources = OrthancResource.find(orthanc, ResourceType.STUDY, tags, caseSensitive, 0, theCount.intValue()); } else { resources = OrthancResource.find(orthanc, ResourceType.STUDY, tags, false); } List<ImagingStudy> studies = new ArrayList<>(); for (OrthancResource resource : resources) { ImagingStudy study = resource.getFhirStudy(orthanc); if (study.hasId()) { studies.add(study); } } return studies; } }