Mercurial > hg > orthanc-java
annotate Samples/FHIR/src/main/java/Toolbox.java @ 43:678bbed285a1 default tip
improved import of JNI in cmake
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 06 Sep 2024 13:53:54 +0200 |
parents | 296798e75896 |
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1 /** |
20 | 2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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3 * SPDX-License-Identifier: GPL-3.0-or-later |
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4 **/ |
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5 |
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6 /** |
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7 * Java plugin for Orthanc |
20 | 8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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9 * |
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10 * This program is free software: you can redistribute it and/or |
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11 * modify it under the terms of the GNU General Public License as |
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12 * published by the Free Software Foundation, either version 3 of the |
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13 * License, or (at your option) any later version. |
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14 * |
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15 * This program is distributed in the hope that it will be useful, but |
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 * General Public License for more details. |
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19 * |
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20 * You should have received a copy of the GNU General Public License |
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 **/ |
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23 |
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24 |
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25 import org.hl7.fhir.r5.model.CodeableConcept; |
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26 import org.hl7.fhir.r5.model.Reference; |
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27 |
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28 import java.util.Calendar; |
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29 import java.util.Date; |
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30 import java.util.GregorianCalendar; |
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31 import java.util.regex.Matcher; |
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32 import java.util.regex.Pattern; |
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33 |
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34 public class Toolbox { |
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35 public static String TAG_PATIENT_NAME = "0010,0010"; |
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36 public static String TAG_PATIENT_ID = "0010,0020"; |
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37 public static String TAG_PATIENT_BIRTH_DATE = "0010,0030"; |
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38 public static String TAG_PATIENT_SEX = "0010,0040"; |
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39 public static String TAG_STUDY_INSTANCE_UID = "0020,000d"; |
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40 public static String TAG_STUDY_DATE = "0008,0020"; |
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41 public static String TAG_SERIES_DESCRIPTION = "0008,103e"; |
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42 public static String TAG_SERIES_INSTANCE_UID = "0020,000e"; |
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43 public static String TAG_MODALITY = "0008,0060"; |
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44 public static String TAG_SERIES_NUMBER = "0020,0011"; |
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45 public static String TAG_SOP_INSTANCE_UID = "0008,0018"; |
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46 public static String TAG_INSTANCE_NUMBER = "0020,0013"; |
15 | 47 public static String TAG_STUDY_DESCRIPTION = "0008,1030"; |
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48 |
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49 public static Date parseDicomDate(String date) { |
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50 Pattern pattern = Pattern.compile("^([0-9]{4})([0-9]{2})([0-9]{2})$"); |
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51 Matcher matcher = pattern.matcher(date); |
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52 if (matcher.matches()) { |
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53 GregorianCalendar calendar = new GregorianCalendar( |
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54 Integer.parseInt(matcher.group(1)), |
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55 Integer.parseInt(matcher.group(2)) - 1, // Month is 1-based in DICOM |
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56 Integer.parseInt(matcher.group(3))); |
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57 return calendar.getTime(); |
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58 } else { |
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59 throw new IllegalArgumentException("Badly formatted DICOM date: " + date); |
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60 } |
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61 } |
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62 |
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63 public static Date parseFhirDate(String date) { |
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64 Pattern pattern = Pattern.compile("^([0-9]{4})-([0-9]{2})-([0-9]{2})$"); |
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65 Matcher matcher = pattern.matcher(date); |
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66 if (matcher.matches()) { |
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67 Calendar c = Calendar.getInstance(); |
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68 c.set(Integer.parseInt(matcher.group(1)), |
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69 Integer.parseInt(matcher.group(2)) - 1, // Month is 1-based in FHIR |
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70 Integer.parseInt(matcher.group(3))); |
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71 return c.getTime(); |
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72 } else { |
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73 throw new IllegalArgumentException("Badly formatted FHIR date: " + date); |
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74 } |
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75 } |
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76 |
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77 public static String formatDicomDate(Date date) { |
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78 Calendar calendar = new GregorianCalendar(); |
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79 calendar.setTime(date); |
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80 return String.format("%04d%02d%02d", calendar.get(Calendar.YEAR), |
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81 calendar.get(Calendar.MONTH) + 1, // Month is 1-based in DICOM |
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82 calendar.get(Calendar.DAY_OF_MONTH)); |
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83 } |
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84 |
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85 public static String formatFhirDate(Date date) { |
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86 Calendar calendar = new GregorianCalendar(); |
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87 calendar.setTime(date); |
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88 return String.format("%04d-%02d-%02d", calendar.get(Calendar.YEAR), |
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89 calendar.get(Calendar.MONTH) + 1, // Month is 1-based in FHIR |
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90 calendar.get(Calendar.DAY_OF_MONTH)); |
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91 } |
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92 |
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93 public static CodeableConcept createCodeableConcept(String system, |
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94 String code) { |
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95 CodeableConcept codeable = new CodeableConcept(); |
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96 codeable.addCoding(); |
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97 codeable.getCoding().get(0).setSystem(system); |
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98 codeable.getCoding().get(0).setCode(code); |
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99 return codeable; |
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100 } |
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101 |
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102 public static CodeableConcept createDicomCodeableConcept(String code) { |
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103 return createCodeableConcept("http://dicom.nema.org/resources/ontology/DCM", code); |
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104 } |
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105 |
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106 public static Reference createLocalReference(String type, |
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107 String id) { |
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108 Reference reference = new Reference(); |
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109 reference.setReference(type + "/" + id); |
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110 return reference; |
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111 } |
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112 } |