annotate Samples/FHIR/src/main/java/Main.java @ 43:678bbed285a1 default tip

improved import of JNI in cmake
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 06 Sep 2024 13:53:54 +0200
parents 7579255a14f8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
20
1c407ba1d311 update year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * SPDX-License-Identifier: GPL-3.0-or-later
14
0dc05fe76bd5 implemented paging in Patient and ImagingStudy resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
4 **/
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 /**
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * Java plugin for Orthanc
20
1c407ba1d311 update year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 *
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * This program is free software: you can redistribute it and/or
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * modify it under the terms of the GNU General Public License as
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * published by the Free Software Foundation, either version 3 of the
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * License, or (at your option) any later version.
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 *
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * This program is distributed in the hope that it will be useful, but
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * WITHOUT ANY WARRANTY; without even the implied warranty of
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * General Public License for more details.
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 *
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * You should have received a copy of the GNU General Public License
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 **/
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 import be.uclouvain.orthanc.Callbacks;
31
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
26 import be.uclouvain.orthanc.ChangeType;
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
27 import be.uclouvain.orthanc.ResourceType;
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 import ca.uhn.fhir.context.FhirContext;
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 import ca.uhn.fhir.rest.server.HardcodedServerAddressStrategy;
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 import ca.uhn.fhir.rest.server.IResourceProvider;
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 import ca.uhn.fhir.rest.server.RestfulServer;
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 import org.springframework.mock.web.MockServletConfig;
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
30
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
35 import java.io.IOException;
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
36 import java.io.InputStream;
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 import java.util.ArrayList;
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 import java.util.List;
30
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
39 import java.util.Properties;
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 import javax.servlet.ServletException;
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 public class Main extends RestfulServer {
31
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
44 Main() {
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 setFhirContext(FhirContext.forR5());
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46
30
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
47 setServerName("Orthanc FHIR server");
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
48
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
49 try (InputStream is = Main.class.getResourceAsStream("app.properties")) {
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
50 Properties properties = new Properties();
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
51 properties.load(is);
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
52 setServerVersion(properties.getProperty("orthanc_java.version"));
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
53 } catch (IOException e) {
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
54 // Ignore error
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
55 }
296798e75896 publish software name and version in FHIR /metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
56
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 FhirConfiguration configuration = new FhirConfiguration();
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 setServerAddressStrategy(new HardcodedServerAddressStrategy(configuration.getServerBaseUrl()));
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 configuration.getDicomWebBaseUrl();
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 IOrthancConnection connection = new OrthancPluginConnection();
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 List<IResourceProvider> resourceProviders = new ArrayList<IResourceProvider>();
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 resourceProviders.add(new PatientProvider(connection));
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 resourceProviders.add(new ImagingStudyProvider(connection));
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 resourceProviders.add(new EndpointProvider(connection));
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 setResourceProviders(resourceProviders);
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 }
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70
31
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
71 private static Main main = new Main();
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72
31
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
73 static {
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 try {
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 main.init(new MockServletConfig());
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 } catch (ServletException e) {
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 throw new RuntimeException("Cannot start the HAPI FHIR server");
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
31
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
80 Callbacks.register(new Callbacks.OnChange() {
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
81 @Override
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
82 public void call(ChangeType changeType, ResourceType resourceType, String resourceId) {
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
83 if (changeType == ChangeType.ORTHANC_STOPPED) {
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
84 main.destroy();
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
85 }
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
86 }
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
87 });
7579255a14f8 calling destroy() on the FHIR server at shutdown
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
88
11
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 Callbacks.register("/fhir(/.*)", new FhirRequestHandler(main));
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 Callbacks.register("/fhir", new FhirRequestHandler(main));
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 }
8d876a4f541b added sample FHIR server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 }