Mercurial > hg > orthanc-java

annotate Samples/FHIR/src/main/java/ImagingStudyProvider.java @ 43:678bbed285a1 default tip

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improved import of JNI in cmake
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 06 Sep 2024 13:53:54 +0200
parents 296798e75896
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1 /**
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2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
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3 * SPDX-License-Identifier: GPL-3.0-or-later
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4 **/
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6 /**
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7 * Java plugin for Orthanc
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8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
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9 *
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10 * This program is free software: you can redistribute it and/or
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11 * modify it under the terms of the GNU General Public License as
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12 * published by the Free Software Foundation, either version 3 of the
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13 * License, or (at your option) any later version.
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14 *
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15 * This program is distributed in the hope that it will be useful, but
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 * General Public License for more details.
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19 *
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20 * You should have received a copy of the GNU General Public License
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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22 **/
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25 import be.uclouvain.orthanc.ResourceType;
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26 import ca.uhn.fhir.rest.annotation.*;
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27 import ca.uhn.fhir.rest.param.ReferenceParam;
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28 import ca.uhn.fhir.rest.param.StringParam;
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29 import ca.uhn.fhir.rest.server.IResourceProvider;
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30 import org.hl7.fhir.r5.model.IdType;
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31 import org.hl7.fhir.r5.model.ImagingStudy;
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33 import java.util.ArrayList;
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34 import java.util.HashMap;
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35 import java.util.List;
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36 import java.util.Map;
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38 public class ImagingStudyProvider implements IResourceProvider {
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39 private IOrthancConnection orthanc;
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41 ImagingStudyProvider(IOrthancConnection orthanc) {
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42 this.orthanc = orthanc;
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43 }
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45 @Override
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46 public Class<ImagingStudy> getResourceType() {
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47 return ImagingStudy.class;
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48 }
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50 @Read
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51 public ImagingStudy getResourceById(@IdParam IdType theId) {
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52 Map<String, String> tags = new HashMap<>();
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53 tags.put(Toolbox.TAG_STUDY_INSTANCE_UID, theId.getIdPart());
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55 List<OrthancResource> resources = OrthancResource.find(orthanc, be.uclouvain.orthanc.ResourceType.STUDY, tags, true);
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56 if (resources.size() == 0) {
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57 return null;
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58 } else if (resources.size() > 1) {
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59 throw new RuntimeException("Too many matching resources");
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60 } else {
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61 return resources.get(0).getFhirStudy(orthanc);
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62 }
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63 }
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65 @Search()
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66 public List<ImagingStudy> getImagingStudies(@OptionalParam(name = ImagingStudy.SP_IDENTIFIER) StringParam theIdentifier,
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67 @OptionalParam(name = ImagingStudy.SP_SUBJECT) ReferenceParam theSubject,
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68 @Offset Integer theOffset,
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69 @Count Integer theCount) {
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70 Map<String, String> tags = new HashMap<>();
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72 if (theIdentifier != null) {
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73 tags.put(Toolbox.TAG_STUDY_INSTANCE_UID, theIdentifier.getValue());
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74 }
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76 if (theSubject != null) {
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77 // https://hapifhir.io/hapi-fhir/docs/server_plain/rest_operations_search.html#search-parameters-resource-reference
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78 tags.put(Toolbox.TAG_PATIENT_ID, theSubject.getValue());
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79 }
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80
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81 final boolean caseSensitive = false;
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82
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83 List<OrthancResource> resources;
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84
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85 if (theOffset != null &&
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86 theCount != null) {
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87 resources = OrthancResource.find(orthanc, ResourceType.STUDY, tags, caseSensitive, theOffset.intValue(), theCount.intValue());
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88 } else if (theCount != null) {
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89 resources = OrthancResource.find(orthanc, ResourceType.STUDY, tags, caseSensitive, 0, theCount.intValue());
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90 } else {
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91 resources = OrthancResource.find(orthanc, ResourceType.STUDY, tags, false);
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92 }
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94 List<ImagingStudy> studies = new ArrayList<>();
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95 for (OrthancResource resource : resources) {
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96 ImagingStudy study = resource.getFhirStudy(orthanc);
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97 if (study.hasId()) {
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98 studies.add(study);
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99 }
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100 }
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101
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102 return studies;
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103 }
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104 }