Mercurial > hg > orthanc-java

annotate Samples/FHIR/src/main/java/PatientProvider.java @ 12:31fc239e3481

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added missing dependency
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 21 Oct 2023 10:08:08 +0200
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1 /**
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2 * SPDX-FileCopyrightText: 2023 Sebastien Jodogne, UCLouvain, Belgium
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3 * SPDX-License-Identifier: GPL-3.0-or-later
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4 */
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5
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6 /**
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7 * Java plugin for Orthanc
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8 * Copyright (C) 2023 Sebastien Jodogne, UCLouvain, Belgium
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9 *
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10 * This program is free software: you can redistribute it and/or
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11 * modify it under the terms of the GNU General Public License as
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12 * published by the Free Software Foundation, either version 3 of the
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13 * License, or (at your option) any later version.
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14 *
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15 * This program is distributed in the hope that it will be useful, but
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 * General Public License for more details.
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19 *
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20 * You should have received a copy of the GNU General Public License
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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22 **/
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23
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24
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25 import be.uclouvain.orthanc.ResourceType;
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26 import ca.uhn.fhir.rest.annotation.IdParam;
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27 import ca.uhn.fhir.rest.annotation.OptionalParam;
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28 import ca.uhn.fhir.rest.annotation.Read;
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29 import ca.uhn.fhir.rest.annotation.Search;
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30 import ca.uhn.fhir.rest.param.DateParam;
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31 import ca.uhn.fhir.rest.param.StringParam;
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32 import ca.uhn.fhir.rest.server.IResourceProvider;
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33 import org.hl7.fhir.r5.model.IdType;
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34 import org.hl7.fhir.r5.model.Patient;
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35
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36 import java.util.ArrayList;
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37 import java.util.HashMap;
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38 import java.util.List;
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39 import java.util.Map;
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40
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41 public class PatientProvider implements IResourceProvider {
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42 private IOrthancConnection orthanc;
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43
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44 PatientProvider(IOrthancConnection orthanc) {
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45 this.orthanc = orthanc;
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46 }
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47
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48 @Override
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49 public Class<Patient> getResourceType() {
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50 return Patient.class;
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51 }
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52
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53 @Read()
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54 public Patient getResourceById(@IdParam IdType theId) {
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55 Map<String, String> tags = new HashMap<>();
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56 tags.put(Toolbox.TAG_PATIENT_ID, theId.getIdPart());
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57
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58 List<OrthancResource> resources = OrthancResource.find(orthanc, ResourceType.PATIENT, tags, true);
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59 if (resources.size() == 0) {
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60 return null;
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61 } else if (resources.size() > 1) {
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62 throw new RuntimeException("Too many matching resources");
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63 } else {
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64 return resources.get(0).getFhirPatient();
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65 }
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66 }
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67
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68 @Search()
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69 public List<Patient> getPatients(@OptionalParam(name = Patient.SP_FAMILY) StringParam theFamilyName,
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70 @OptionalParam(name = Patient.SP_GIVEN) StringParam theGivenName,
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71 @OptionalParam(name = Patient.SP_IDENTIFIER) StringParam theIdentifier,
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72 @OptionalParam(name = Patient.SP_BIRTHDATE) DateParam theBirthDate) {
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73 Map<String, String> tags = new HashMap<>();
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74
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75 if (theFamilyName != null &&
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76 theGivenName != null) {
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77 tags.put(Toolbox.TAG_PATIENT_NAME, "*" + theFamilyName.getValue() + "*" + theGivenName.getValue() + "*");
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78 } else if (theFamilyName != null) {
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79 tags.put(Toolbox.TAG_PATIENT_NAME, "*" + theFamilyName.getValue() + "*");
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80 } else if (theGivenName != null) {
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81 tags.put(Toolbox.TAG_PATIENT_NAME, "*" + theGivenName.getValue() + "*");
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82 }
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83
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84 if (theIdentifier != null) {
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85 tags.put(Toolbox.TAG_PATIENT_ID, theIdentifier.getValue());
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86 }
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87
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88 if (theBirthDate != null) {
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89 tags.put(Toolbox.TAG_PATIENT_BIRTH_DATE, Toolbox.formatDicomDate(theBirthDate.getValue()));
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90 }
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91
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92 List<OrthancResource> resources = OrthancResource.find(orthanc, ResourceType.PATIENT, tags, false);
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93
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94 List<Patient> patients = new ArrayList<>();
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95 for (OrthancResource resource : resources) {
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96 Patient patient = resource.getFhirPatient();
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97 if (patient.hasId()) {
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98 patients.add(patient);
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99 }
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100 }
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101
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102 return patients;
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103 }
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104 }