Mercurial > hg > orthanc-dicomweb
view Plugin/Configuration.cpp @ 661:f85a7341b103
upgrading SendStow.py and WadoRetrieveStudy.py sample scripts to Python 3
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 05 Jun 2024 14:56:03 +0200 |
parents | c59955903971 |
children | 882743589c73 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "Configuration.h" #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" #include "DicomWebServers.h" #include <DicomFormat/DicomMap.h> #include <Compatibility.h> #include <Logging.h> #include <Toolbox.h> #include <fstream> #include <boost/regex.hpp> #include <boost/lexical_cast.hpp> #include <boost/algorithm/string/predicate.hpp> // Assume Latin-1 encoding by default (as in the Orthanc core) static Orthanc::Encoding defaultEncoding_ = Orthanc::Encoding_Latin1; static std::unique_ptr<OrthancPlugins::OrthancConfiguration> dicomWebConfiguration_; static std::unique_ptr<OrthancPlugins::OrthancConfiguration> globalConfiguration_; static bool serversInDatabase_ = false; static const int32_t GLOBAL_PROPERTY_SERVERS = 5468; namespace OrthancPlugins { bool LookupHttpHeader(std::string& value, const OrthancPluginHttpRequest* request, const std::string& header) { value.clear(); for (uint32_t i = 0; i < request->headersCount; i++) { std::string s = request->headersKeys[i]; Orthanc::Toolbox::ToLowerCase(s); if (s == header) { value = request->headersValues[i]; return true; } } return false; } void ParseAssociativeArray(std::map<std::string, std::string>& target, const Json::Value& value) { if (value.type() != Json::objectValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "The JSON object is not a JSON associative array as expected"); } Json::Value::Members names = value.getMemberNames(); for (size_t i = 0; i < names.size(); i++) { if (value[names[i]].type() != Json::stringValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Value \"" + names[i] + "\" in the associative array " "is not a string as expected"); } else { target[names[i]] = value[names[i]].asString(); } } } void ParseAssociativeArray(std::map<std::string, std::string>& target, const Json::Value& value, const std::string& key) { if (value.type() != Json::objectValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "This is not a JSON object"); } if (value.isMember(key)) { ParseAssociativeArray(target, value[key]); } else { target.clear(); } } bool ParseTag(Orthanc::DicomTag& target, const std::string& name) { OrthancPluginDictionaryEntry entry; if (OrthancPluginLookupDictionary(GetGlobalContext(), &entry, name.c_str()) == OrthancPluginErrorCode_Success) { target = Orthanc::DicomTag(entry.group, entry.element); return true; } else { return false; } } void ParseJsonBody(Json::Value& target, const OrthancPluginHttpRequest* request) { if (!OrthancPlugins::ReadJson(target, request->body, request->bodySize)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "A JSON file was expected"); } } std::string RemoveMultipleSlashes(const std::string& source) { std::string target; target.reserve(source.size()); size_t prefix = 0; if (boost::starts_with(source, "https://")) { prefix = 8; } else if (boost::starts_with(source, "http://")) { prefix = 7; } for (size_t i = 0; i < prefix; i++) { target.push_back(source[i]); } bool isLastSlash = false; for (size_t i = prefix; i < source.size(); i++) { if (source[i] == '/') { if (!isLastSlash) { target.push_back('/'); isLastSlash = true; } } else { target.push_back(source[i]); isLastSlash = false; } } return target; } bool LookupStringValue(std::string& target, const Json::Value& json, const std::string& key) { if (json.type() != Json::objectValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } else if (!json.isMember(key)) { return false; } else if (json[key].type() != Json::stringValue) { throw Orthanc::OrthancException( Orthanc::ErrorCode_BadFileFormat, "The field \"" + key + "\" in a JSON object should be a string"); } else { target = json[key].asString(); return true; } } bool LookupIntegerValue(int& target, const Json::Value& json, const std::string& key) { if (json.type() != Json::objectValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } else if (!json.isMember(key)) { return false; } else if (json[key].type() != Json::intValue && json[key].type() != Json::uintValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } else { target = json[key].asInt(); return true; } } bool LookupBooleanValue(bool& target, const Json::Value& json, const std::string& key) { if (json.type() != Json::objectValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } else if (!json.isMember(key)) { return false; } else if (json[key].type() != Json::booleanValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } else { target = json[key].asBool(); return true; } } namespace Configuration { // TODO: find a way to reuse/share the method from/with the Orthanc Core void LoadMainDicomTags(const Json::Value& configuration) { static const char* const EXTRA_MAIN_DICOM_TAGS = "ExtraMainDicomTags"; // note: the configuration is assumed to be valid since it has already been parsed by the Orthanc Core Json::Value::Members levels(configuration[EXTRA_MAIN_DICOM_TAGS].getMemberNames()); for (Json::Value::ArrayIndex i = 0; i < levels.size(); i++) { Orthanc::ResourceType level = Orthanc::StringToResourceType(levels[i].c_str()); const Json::Value& content = configuration[EXTRA_MAIN_DICOM_TAGS][levels[i]]; if (content.size() > 0) { for (Json::Value::ArrayIndex t = 0; t < content.size(); t++) { const std::string& tagName = content[t].asString(); Orthanc::DicomTag tag(0, 0); OrthancPlugins::ParseTag(tag, tagName); Orthanc::DicomMap::AddMainDicomTag(tag, level); } } } } void Initialize() { dicomWebConfiguration_.reset(new OrthancConfiguration); globalConfiguration_.reset(new OrthancConfiguration); globalConfiguration_->GetSection(*dicomWebConfiguration_, "DicomWeb"); std::string s; if (globalConfiguration_->LookupStringValue(s, "DefaultEncoding")) { defaultEncoding_ = Orthanc::StringToEncoding(s.c_str()); } if (!dicomWebConfiguration_->LookupBooleanValue(serversInDatabase_, "ServersInDatabase")) { serversInDatabase_ = false; } if (serversInDatabase_) { LOG(INFO) << "The DICOMweb plugin stores the DICOMweb servers in the Orthanc database"; } else { LOG(INFO) << "The DICOMweb plugin reads the DICOMweb servers from the configuration file"; } DicomWebServers::GetInstance().Clear(); // Check configuration during initialization GetMetadataMode(Orthanc::ResourceType_Study); GetMetadataMode(Orthanc::ResourceType_Series); std::set<Orthanc::DicomTag> tags; GetExtrapolatedMetadataTags(tags, Orthanc::ResourceType_Study); GetExtrapolatedMetadataTags(tags, Orthanc::ResourceType_Series); LoadMainDicomTags(globalConfiguration_->GetJson()); } std::string GetStringValue(const std::string& key, const std::string& defaultValue) { assert(dicomWebConfiguration_.get() != NULL); return dicomWebConfiguration_->GetStringValue(key, defaultValue); } bool GetBooleanValue(const std::string& key, bool defaultValue) { assert(dicomWebConfiguration_.get() != NULL); return dicomWebConfiguration_->GetBooleanValue(key, defaultValue); } bool LookupBooleanValue(bool& target, const std::string& key) { assert(dicomWebConfiguration_.get() != NULL); return dicomWebConfiguration_->LookupBooleanValue(target, key); } unsigned int GetUnsignedIntegerValue(const std::string& key, unsigned int defaultValue) { assert(dicomWebConfiguration_.get() != NULL); return dicomWebConfiguration_->GetUnsignedIntegerValue(key, defaultValue); } std::string GetRootPath(const char* configName, const char* defaultValue) { assert(dicomWebConfiguration_.get() != NULL); std::string root = dicomWebConfiguration_->GetStringValue(configName, defaultValue); // Make sure the root URI starts and ends with a slash if (root.size() == 0 || root[0] != '/') { root = "/" + root; } if (root[root.length() - 1] != '/') { root += "/"; } return root; } std::string GetDicomWebRoot() { return GetRootPath("Root", "/dicom-web/"); } std::string GetPublicRoot() { std::string root = GetDicomWebRoot(); return GetRootPath("PublicRoot", root.c_str()); } std::string GetOrthancApiRoot() { std::string root = Configuration::GetDicomWebRoot(); std::vector<std::string> tokens; Orthanc::Toolbox::TokenizeString(tokens, root, '/'); int depth = 0; for (size_t i = 0; i < tokens.size(); i++) { if (tokens[i].empty() || tokens[i] == ".") { // Don't change the depth } else if (tokens[i] == "..") { depth--; } else { depth++; } } std::string orthancRoot = "./"; for (int i = 0; i < depth; i++) { orthancRoot += "../"; } return orthancRoot; } std::string GetWadoRoot() { assert(dicomWebConfiguration_.get() != NULL); std::string root = dicomWebConfiguration_->GetStringValue("WadoRoot", "/wado/"); // Make sure the root URI starts with a slash if (root.size() == 0 || root[0] != '/') { root = "/" + root; } // Remove the trailing slash, if any if (root[root.length() - 1] == '/') { root = root.substr(0, root.length() - 1); } return root; } static bool IsHttpsProto(const std::string& proto, bool defaultValue) { if (proto == "http") { return false; } else if (proto == "https") { return true; } else { return defaultValue; } } static bool LookupHttpHeader2(std::string& value, const HttpClient::HttpHeaders& headers, const std::string& name) { for (HttpClient::HttpHeaders::const_iterator it = headers.begin(); it != headers.end(); ++it) { if (boost::iequals(it->first, name)) { value = it->second; return true; } } return false; } std::string GetBasePublicUrl(const HttpClient::HttpHeaders& headers) { assert(dicomWebConfiguration_.get() != NULL); std::string host = dicomWebConfiguration_->GetStringValue("Host", ""); bool https = dicomWebConfiguration_->GetBooleanValue("Ssl", false); std::string forwardedHost, forwardedProto; if (host.empty() && LookupHttpHeader2(forwardedHost, headers, "x-forwarded-host") && LookupHttpHeader2(forwardedProto, headers, "x-forwarded-proto")) { // There is a "X-Forwarded-Proto" and a "X-Forwarded-Host" HTTP header in the query // https://developer.mozilla.org/en-US/docs/Web/HTTP/Headers/X-Forwarded-Proto host = Orthanc::Toolbox::StripSpaces(forwardedHost); https = IsHttpsProto(Orthanc::Toolbox::StripSpaces(forwardedProto), https); } std::string forwarded; if (host.empty() && LookupHttpHeader2(forwarded, headers, "forwarded")) { // There is a "Forwarded" HTTP header in the query // https://developer.mozilla.org/en-US/docs/Web/HTTP/Headers/Forwarded std::vector<std::string> forwarders; Orthanc::Toolbox::TokenizeString(forwarders, forwarded, ','); // Only consider the first forwarder, if any if (!forwarders.empty()) { std::vector<std::string> tokens; Orthanc::Toolbox::TokenizeString(tokens, forwarders[0], ';'); for (size_t j = 0; j < tokens.size(); j++) { std::vector<std::string> args; Orthanc::Toolbox::TokenizeString(args, tokens[j], '='); if (args.size() == 2) { std::string key = Orthanc::Toolbox::StripSpaces(args[0]); std::string value = Orthanc::Toolbox::StripSpaces(args[1]); Orthanc::Toolbox::ToLowerCase(key); if (key == "host") { host = value; } else if (key == "proto") { https = IsHttpsProto(value, https); } } } } } if (host.empty() && !LookupHttpHeader2(host, headers, "host")) { // Should never happen: The "host" header should always be present // in HTTP requests. Provide a default value anyway. host = "localhost:8042"; } return (https ? "https://" : "http://") + host + GetPublicRoot(); } std::string GetBasePublicUrl(const OrthancPluginHttpRequest* request) { HttpClient::HttpHeaders headers; std::string value; if (LookupHttpHeader(value, request, "forwarded")) { headers["Forwarded"] = value; } if (LookupHttpHeader(value, request, "host")) { headers["Host"] = value; } if (LookupHttpHeader(value, request, "x-forwarded-host")) { headers["X-Forwarded-Host"] = value; } if (LookupHttpHeader(value, request, "x-forwarded-proto")) { headers["X-Forwarded-Proto"] = value; } if (LookupHttpHeader(value, request, "host")) { headers["Host"] = value; } return GetBasePublicUrl(headers); } std::string GetWadoUrl(const std::string& wadoBase, const std::string& studyInstanceUid, const std::string& seriesInstanceUid, const std::string& sopInstanceUid) { if (studyInstanceUid.empty() || seriesInstanceUid.empty() || sopInstanceUid.empty()) { return ""; } else { return (wadoBase + "studies/" + studyInstanceUid + "/series/" + seriesInstanceUid + "/instances/" + sopInstanceUid + "/"); } } Orthanc::Encoding GetDefaultEncoding() { return defaultEncoding_; } static bool IsXmlExpected(const std::string& acceptHeader) { std::string accept; Orthanc::Toolbox::ToLowerCase(accept, acceptHeader); if (accept == "application/dicom+json" || accept == "application/json" || accept == "*/*") { return false; } else if (accept == "application/dicom+xml" || accept == "application/xml" || accept == "text/xml") { return true; } else { LOG(ERROR) << "Unsupported return MIME type: " << accept << ", will return DICOM+JSON"; return false; } } bool IsXmlExpected(const std::map<std::string, std::string>& headers) { std::map<std::string, std::string>::const_iterator found = headers.find("accept"); if (found == headers.end()) { return false; // By default, return DICOM+JSON } else { return IsXmlExpected(found->second); } } bool IsXmlExpected(const OrthancPluginHttpRequest* request) { std::string accept; if (LookupHttpHeader(accept, request, "accept")) { return IsXmlExpected(accept); } else { return false; // By default, return DICOM+JSON } } unsigned int GetMetadataWorkerThreadsCount() { return GetUnsignedIntegerValue("MetadataWorkerThreadsCount", 4); } bool IsMetadataCacheEnabled() { return GetBooleanValue("EnableMetadataCache", true); } MetadataMode GetMetadataMode(Orthanc::ResourceType level) { static const std::string FULL = "Full"; static const std::string MAIN_DICOM_TAGS = "MainDicomTags"; static const std::string EXTRAPOLATE = "Extrapolate"; std::string key; switch (level) { case Orthanc::ResourceType_Study: key = "StudiesMetadata"; break; case Orthanc::ResourceType_Series: key = "SeriesMetadata"; break; default: throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } std::string value = GetStringValue(key, FULL); if (value == FULL) { return MetadataMode_Full; } else if (value == MAIN_DICOM_TAGS) { return MetadataMode_MainDicomTags; } else if (value == EXTRAPOLATE) { return MetadataMode_Extrapolate; } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, "Bad value for option \"" + key + "\": Should be either \"" + FULL + "\" or \"" + MAIN_DICOM_TAGS + "\" or \"" + EXTRAPOLATE + "\""); } } void GetSetOfTags(std::set<Orthanc::DicomTag>& tags, const std::string& key) { tags.clear(); std::list<std::string> s; if (dicomWebConfiguration_->LookupListOfStrings(s, key, false)) { for (std::list<std::string>::const_iterator it = s.begin(); it != s.end(); ++it) { OrthancPluginDictionaryEntry entry; if (OrthancPluginLookupDictionary(GetGlobalContext(), &entry, it->c_str()) == OrthancPluginErrorCode_Success) { tags.insert(Orthanc::DicomTag(entry.group, entry.element)); } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, "Unknown DICOM tag in option \"" + key + "\" of DICOMweb: " + *it); } } } } void GetExtrapolatedMetadataTags(std::set<Orthanc::DicomTag>& tags, Orthanc::ResourceType level) { switch (level) { case Orthanc::ResourceType_Study: GetSetOfTags(tags, "StudiesMetadataExtrapolatedTags"); break; case Orthanc::ResourceType_Series: GetSetOfTags(tags, "SeriesMetadataExtrapolatedTags"); break; default: throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } } void LoadDicomWebServers() { if (serversInDatabase_) { // New in DICOMweb 1.5 OrthancString property; property.Assign(OrthancPluginGetGlobalProperty( GetGlobalContext(), GLOBAL_PROPERTY_SERVERS, "{}")); if (property.GetContent() == NULL) { DicomWebServers::GetInstance().Clear(); } else { try { DicomWebServers::GetInstance().UnserializeGlobalProperty(property.GetContent()); } catch (Orthanc::OrthancException&) { DicomWebServers::GetInstance().Clear(); LOG(ERROR) << "Cannot read the DICOMweb servers from the database, no server will be defined"; } } } else { OrthancConfiguration servers; dicomWebConfiguration_->GetSection(servers, "Servers"); DicomWebServers::GetInstance().LoadGlobalConfiguration(servers.GetJson()); } } void SaveDicomWebServers() { if (serversInDatabase_) { // New in DICOMweb 1.5 std::string property; DicomWebServers::GetInstance().SerializeGlobalProperty(property); if (OrthancPluginSetGlobalProperty( OrthancPlugins::GetGlobalContext(), GLOBAL_PROPERTY_SERVERS, property.c_str()) != OrthancPluginErrorCode_Success) { LOG(ERROR) << "Cannot write the DICOMweb servers into the database"; } } } } }