Mercurial > hg > orthanc-dicomweb
view Plugin/DicomWebFormatter.cpp @ 655:c59955903971
updated copyright, as Orthanc Team now replaces Osimis
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Thu, 30 May 2024 21:42:05 +0200 |
parents | d3f5eb4d3830 |
children |
line wrap: on
line source
/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "DicomWebFormatter.h" #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" #if !defined(NDEBUG) // In debug mode, check that the value is actually a JSON string # include <Toolbox.h> #endif namespace OrthancPlugins { static std::string FormatTag(uint16_t group, uint16_t element) { char buf[16]; sprintf(buf, "%04x%04x", group, element); return std::string(buf); } void DicomWebFormatter::Callback(OrthancPluginDicomWebNode *node, OrthancPluginDicomWebSetBinaryNode setter, uint32_t levelDepth, const uint16_t *levelTagGroup, const uint16_t *levelTagElement, const uint32_t *levelIndex, uint16_t tagGroup, uint16_t tagElement, OrthancPluginValueRepresentation vr, void* payload) { const DicomWebFormatter& that = *reinterpret_cast<const DicomWebFormatter*>(payload); switch (that.mode_) { case OrthancPluginDicomWebBinaryMode_Ignore: case OrthancPluginDicomWebBinaryMode_InlineBinary: setter(node, that.mode_, NULL); break; case OrthancPluginDicomWebBinaryMode_BulkDataUri: { std::string uri = that.bulkRoot_; for (size_t i = 0; i < levelDepth; i++) { uri += ("/" + FormatTag(levelTagGroup[i], levelTagElement[i]) + "/" + boost::lexical_cast<std::string>(levelIndex[i] + 1)); } uri += "/" + FormatTag(tagGroup, tagElement); setter(node, that.mode_, uri.c_str()); break; } } } void DicomWebFormatter::Apply(std::string& target, OrthancPluginContext* context, const void* data, size_t size, bool xml, OrthancPluginDicomWebBinaryMode mode, const std::string& bulkRoot) { DicomWebFormatter payload(mode, bulkRoot); OrthancString s; if (xml) { s.Assign(OrthancPluginEncodeDicomWebXml2(context, data, size, Callback, &payload)); } else { s.Assign(OrthancPluginEncodeDicomWebJson2(context, data, size, Callback, &payload)); } if (s.GetContent() == NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError, "Cannot convert DICOM to DICOMweb"); } else { s.ToString(target); } } void DicomWebFormatter::Apply(std::string& target, OrthancPluginContext* context, const Json::Value& value, bool xml, OrthancPluginDicomWebBinaryMode mode, const std::string& bulkRoot) { MemoryBuffer dicom; dicom.CreateDicom(value, OrthancPluginCreateDicomFlags_None); Apply(target, context, dicom.GetData(), dicom.GetSize(), xml, mode, bulkRoot); } void DicomWebFormatter::Apply(std::string& target, OrthancPluginContext* context, const DicomInstance& instance, bool xml, OrthancPluginDicomWebBinaryMode mode, const std::string& bulkRoot) { DicomWebFormatter payload(mode, bulkRoot); OrthancString s; if (xml) { s.Assign(OrthancPluginGetInstanceDicomWebXml(context, instance.GetObject(), Callback, &payload)); } else { s.Assign(OrthancPluginGetInstanceDicomWebJson(context, instance.GetObject(), Callback, &payload)); } if (s.GetContent() == NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError, "Cannot convert DICOM to DICOMweb"); } else { s.ToString(target); } } DicomWebFormatter::HttpWriter::HttpWriter(OrthancPluginRestOutput* output, bool isXml) : context_(GetGlobalContext()), output_(output), isXml_(isXml), first_(true) { if (context_ == NULL || (isXml_ && output_ == NULL)) // allow no output when working with Json output. { throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer); } if (isXml_) { OrthancPluginStartMultipartAnswer(context_, output_, "related", "application/dicom+xml"); } else { jsonBuffer_.AddChunk("["); } } void DicomWebFormatter::HttpWriter::AddInternal(const void* dicom, size_t size, OrthancPluginDicomWebBinaryMode mode, const std::string& bulkRoot) { if (!first_ && !isXml_) { jsonBuffer_.AddChunk(","); } first_ = false; std::string item; DicomWebFormatter::Apply(item, context_, dicom, size, isXml_, mode, bulkRoot); if (isXml_) { OrthancPluginSendMultipartItem(context_, output_, item.c_str(), item.size()); } else { jsonBuffer_.AddChunk(item); } } static void ToShortDicomAsJson(Json::Value& target, const Json::Value& fullJsonSource) { // printf("%s", fullJsonSource.toStyledString().c_str()); if (fullJsonSource.isArray() && target.isArray()) { for (Json::Value::ArrayIndex i = 0; i < fullJsonSource.size(); ++i) { Json::Value& child = target.append(Json::objectValue); ToShortDicomAsJson(child, fullJsonSource[i]); } } else if (fullJsonSource.isObject() && target.isObject()) { const Json::Value::Members& members = fullJsonSource.getMemberNames(); for (Json::Value::Members::const_iterator member = members.begin(); member != members.end(); ++member) { target[*member] = Json::objectValue; const Json::Value& jsonSourceMember = fullJsonSource[*member]; if (jsonSourceMember.isMember("Type")) { if (jsonSourceMember["Type"] == "String") { target[*member] = jsonSourceMember["Value"]; } else if (jsonSourceMember["Type"] == "Sequence") { target[*member] = Json::arrayValue; ToShortDicomAsJson(target[*member], jsonSourceMember["Value"]); } else if (jsonSourceMember["Type"] == "Null") { target[*member] = Json::nullValue; } } } } } void DicomWebFormatter::HttpWriter::AddOrthancMap(const Orthanc::DicomMap& value) { Json::Value json = Json::objectValue; std::set<Orthanc::DicomTag> tags; value.GetTags(tags); // construct a "short" DicomAsJson that can be used in CreateDicom for (std::set<Orthanc::DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) { const Orthanc::DicomValue& v = value.GetValue(*it); if (v.IsSequence()) { json[it->Format()] = Json::arrayValue; ToShortDicomAsJson(json[it->Format()], v.GetSequenceContent()); } else { std::string s; if (value.LookupStringValue(s, *it, false)) { json[it->Format()] = s; } } } AddOrthancJson(json); } void DicomWebFormatter::HttpWriter::AddOrthancJson(const Json::Value& value) { MemoryBuffer dicom; dicom.CreateDicom(value, OrthancPluginCreateDicomFlags_None); AddInternal(dicom.GetData(), dicom.GetSize(), OrthancPluginDicomWebBinaryMode_Ignore, ""); } void DicomWebFormatter::HttpWriter::AddDicomWebInstanceSerializedJson(const void* data, size_t size) { if (isXml_) { // This function can only be used in the JSON case throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); } #if !defined(NDEBUG) // In debug mode, check that the value is actually a JSON string Json::Value json; if (!OrthancPlugins::ReadJson(json, data, size)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } #endif if (first_) { first_ = false; } else { jsonBuffer_.AddChunk(","); } jsonBuffer_.AddChunk(data, size); } void DicomWebFormatter::HttpWriter::AddDicomWebSeriesSerializedJson(const void* data, size_t size) { if (isXml_) { // This function can only be used in the JSON case throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); } #if !defined(NDEBUG) // In debug mode, check that the value is actually a JSON string Json::Value json; if (!OrthancPlugins::ReadJson(json, data, size)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } #endif if (size <= 2 || reinterpret_cast<const char*>(data)[0] != '[' || reinterpret_cast<const char*>(data)[size-1] != ']') { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "The series metadata json does not contain an array."); } if (first_) { first_ = false; } else { jsonBuffer_.AddChunk(","); } jsonBuffer_.AddChunk(reinterpret_cast<const char*>(data) + 1, size - 2); // remove leading and trailing [] } void DicomWebFormatter::HttpWriter::Send() { if (!isXml_) { jsonBuffer_.AddChunk("]"); std::string answer; jsonBuffer_.Flatten(answer); OrthancPluginAnswerBuffer(context_, output_, answer.c_str(), answer.size(), "application/dicom+json"); } } void DicomWebFormatter::HttpWriter::CloseAndGetJsonOutput(std::string& target) { if (!isXml_) { jsonBuffer_.AddChunk("]"); jsonBuffer_.Flatten(target); } } void DicomWebFormatter::HttpWriter::AddInstance(const DicomInstance& instance, const std::string& bulkRoot) { if (!first_ && !isXml_) { jsonBuffer_.AddChunk(","); } first_ = false; std::string item; DicomWebFormatter::Apply(item, context_, instance, isXml_, OrthancPluginDicomWebBinaryMode_BulkDataUri, bulkRoot); if (isXml_) { OrthancPluginSendMultipartItem(context_, output_, item.c_str(), item.size()); } else { jsonBuffer_.AddChunk(item); } } }