Mercurial > hg > orthanc-dicomweb
view Plugin/WadoRs.cpp @ 216:a97d667d1b29
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 11 Apr 2018 16:24:42 +0200 |
parents | 28d017f770a3 |
children | c7cf816f8c3f |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2018 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "Plugin.h" #include "Configuration.h" #include "Dicom.h" #include "DicomResults.h" #include "../Orthanc/Core/Toolbox.h" #include <memory> static bool AcceptMultipartDicom(const OrthancPluginHttpRequest* request) { std::string accept; if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) { return true; // By default, return "multipart/related; type=application/dicom;" } std::string application; std::map<std::string, std::string> attributes; OrthancPlugins::ParseContentType(application, attributes, accept); if (application != "multipart/related" && application != "*/*") { OrthancPlugins::Configuration::LogError("This WADO-RS plugin cannot generate the following content type: " + accept); return false; } if (attributes.find("type") != attributes.end()) { std::string s = attributes["type"]; Orthanc::Toolbox::ToLowerCase(s); if (s != "application/dicom") { OrthancPlugins::Configuration::LogError("This WADO-RS plugin only supports application/dicom " "return type for DICOM retrieval (" + accept + ")"); return false; } } if (attributes.find("transfer-syntax") != attributes.end()) { OrthancPlugins::Configuration::LogError("This WADO-RS plugin cannot change the transfer syntax to " + attributes["transfer-syntax"]); return false; } return true; } static bool AcceptMetadata(const OrthancPluginHttpRequest* request, bool& isXml) { isXml = false; // By default, return application/dicom+json std::string accept; if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) { return true; } std::string application; std::map<std::string, std::string> attributes; OrthancPlugins::ParseContentType(application, attributes, accept); if (application == "application/json" || application == "application/dicom+json" || application == "*/*") { return true; } if (application != "multipart/related") { OrthancPlugins::Configuration::LogError("This WADO-RS plugin cannot generate the following content type: " + accept); return false; } if (attributes.find("type") != attributes.end()) { std::string s = attributes["type"]; Orthanc::Toolbox::ToLowerCase(s); if (s == "application/dicom+xml") { isXml = true; } else { OrthancPlugins::Configuration::LogError("This WADO-RS plugin only supports application/dicom+xml " "type for multipart/related accept (" + accept + ")"); return false; } } else { OrthancPlugins::Configuration::LogError("Missing \"type\" in multipart/related accept type (" + accept + ")"); return false; } if (attributes.find("transfer-syntax") != attributes.end()) { OrthancPlugins::Configuration::LogError("This WADO-RS plugin cannot change the transfer syntax to " + attributes["transfer-syntax"]); return false; } return true; } static bool AcceptBulkData(const OrthancPluginHttpRequest* request) { std::string accept; if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) { return true; // By default, return "multipart/related; type=application/octet-stream;" } std::string application; std::map<std::string, std::string> attributes; OrthancPlugins::ParseContentType(application, attributes, accept); if (application != "multipart/related" && application != "*/*") { OrthancPlugins::Configuration::LogError("This WADO-RS plugin cannot generate the following bulk data type: " + accept); return false; } if (attributes.find("type") != attributes.end()) { std::string s = attributes["type"]; Orthanc::Toolbox::ToLowerCase(s); if (s != "application/octet-stream") { OrthancPlugins::Configuration::LogError("This WADO-RS plugin only supports application/octet-stream " "return type for bulk data retrieval (" + accept + ")"); return false; } } if (attributes.find("ra,ge") != attributes.end()) { OrthancPlugins::Configuration::LogError("This WADO-RS plugin does not support Range retrieval, " "it can only return entire bulk data object"); return false; } return true; } static void AnswerListOfDicomInstances(OrthancPluginRestOutput* output, const std::string& resource) { OrthancPluginContext* context = OrthancPlugins::Configuration::GetContext(); Json::Value instances; if (!OrthancPlugins::RestApiGet(instances, context, resource + "/instances", false)) { // Internal error OrthancPluginSendHttpStatusCode(context, output, 400); return; } if (OrthancPluginStartMultipartAnswer(context, output, "related", "application/dicom")) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } for (Json::Value::ArrayIndex i = 0; i < instances.size(); i++) { std::string uri = "/instances/" + instances[i]["ID"].asString() + "/file"; OrthancPlugins::MemoryBuffer dicom(context); if (dicom.RestApiGet(uri, false) && OrthancPluginSendMultipartItem(context, output, dicom.GetData(), dicom.GetSize()) != 0) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } } } static void AnswerMetadata(OrthancPluginRestOutput* output, const OrthancPluginHttpRequest* request, const std::string& resource, bool isInstance, bool isXml) { OrthancPluginContext* context = OrthancPlugins::Configuration::GetContext(); std::list<std::string> files; if (isInstance) { files.push_back(resource + "/file"); } else { Json::Value instances; if (!OrthancPlugins::RestApiGet(instances, context, resource + "/instances", false)) { // Internal error OrthancPluginSendHttpStatusCode(context, output, 400); return; } for (Json::Value::ArrayIndex i = 0; i < instances.size(); i++) { files.push_back("/instances/" + instances[i]["ID"].asString() + "/file"); } } const std::string wadoBase = OrthancPlugins::Configuration::GetBaseUrl(request); OrthancPlugins::DicomResults results(context, output, wadoBase, *dictionary_, isXml, true); for (std::list<std::string>::const_iterator it = files.begin(); it != files.end(); ++it) { OrthancPlugins::MemoryBuffer content(context); if (content.RestApiGet(*it, false)) { OrthancPlugins::ParsedDicomFile dicom(content); results.Add(dicom.GetFile()); } } results.Answer(); } static bool LocateStudy(OrthancPluginRestOutput* output, std::string& uri, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::Configuration::GetContext(); if (request->method != OrthancPluginHttpMethod_Get) { OrthancPluginSendMethodNotAllowed(context, output, "GET"); return false; } std::string id; { char* tmp = OrthancPluginLookupStudy(context, request->groups[0]); if (tmp == NULL) { OrthancPlugins::Configuration::LogError("Accessing an inexistent study with WADO-RS: " + std::string(request->groups[0])); OrthancPluginSendHttpStatusCode(context, output, 404); return false; } id.assign(tmp); OrthancPluginFreeString(context, tmp); } uri = "/studies/" + id; return true; } static bool LocateSeries(OrthancPluginRestOutput* output, std::string& uri, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::Configuration::GetContext(); if (request->method != OrthancPluginHttpMethod_Get) { OrthancPluginSendMethodNotAllowed(context, output, "GET"); return false; } std::string id; { char* tmp = OrthancPluginLookupSeries(context, request->groups[1]); if (tmp == NULL) { OrthancPlugins::Configuration::LogError("Accessing an inexistent series with WADO-RS: " + std::string(request->groups[1])); OrthancPluginSendHttpStatusCode(context, output, 404); return false; } id.assign(tmp); OrthancPluginFreeString(context, tmp); } Json::Value study; if (!OrthancPlugins::RestApiGet(study, context, "/series/" + id + "/study", false)) { OrthancPluginSendHttpStatusCode(context, output, 404); return false; } if (study["MainDicomTags"]["StudyInstanceUID"].asString() != std::string(request->groups[0])) { OrthancPlugins::Configuration::LogError("No series " + std::string(request->groups[1]) + " in study " + std::string(request->groups[0])); OrthancPluginSendHttpStatusCode(context, output, 404); return false; } uri = "/series/" + id; return true; } bool LocateInstance(OrthancPluginRestOutput* output, std::string& uri, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::Configuration::GetContext(); if (request->method != OrthancPluginHttpMethod_Get) { OrthancPluginSendMethodNotAllowed(context, output, "GET"); return false; } std::string id; { char* tmp = OrthancPluginLookupInstance(context, request->groups[2]); if (tmp == NULL) { OrthancPlugins::Configuration::LogError("Accessing an inexistent instance with WADO-RS: " + std::string(request->groups[2])); OrthancPluginSendHttpStatusCode(context, output, 404); return false; } id.assign(tmp); OrthancPluginFreeString(context, tmp); } Json::Value study, series; if (!OrthancPlugins::RestApiGet(series, context, "/instances/" + id + "/series", false) || !OrthancPlugins::RestApiGet(study, context, "/instances/" + id + "/study", false)) { OrthancPluginSendHttpStatusCode(context, output, 404); return false; } if (study["MainDicomTags"]["StudyInstanceUID"].asString() != std::string(request->groups[0]) || series["MainDicomTags"]["SeriesInstanceUID"].asString() != std::string(request->groups[1])) { OrthancPlugins::Configuration::LogError("No instance " + std::string(request->groups[2]) + " in study " + std::string(request->groups[0]) + " or " + " in series " + std::string(request->groups[1])); OrthancPluginSendHttpStatusCode(context, output, 404); return false; } uri = "/instances/" + id; return true; } void RetrieveDicomStudy(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { if (!AcceptMultipartDicom(request)) { OrthancPluginSendHttpStatusCode(OrthancPlugins::Configuration::GetContext(), output, 400 /* Bad request */); } else { std::string uri; if (LocateStudy(output, uri, request)) { AnswerListOfDicomInstances(output, uri); } } } void RetrieveDicomSeries(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { if (!AcceptMultipartDicom(request)) { OrthancPluginSendHttpStatusCode(OrthancPlugins::Configuration::GetContext(), output, 400 /* Bad request */); } else { std::string uri; if (LocateSeries(output, uri, request)) { AnswerListOfDicomInstances(output, uri); } } } void RetrieveDicomInstance(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::Configuration::GetContext(); if (!AcceptMultipartDicom(request)) { OrthancPluginSendHttpStatusCode(context, output, 400 /* Bad request */); } else { std::string uri; if (LocateInstance(output, uri, request)) { if (OrthancPluginStartMultipartAnswer(context, output, "related", "application/dicom")) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } OrthancPlugins::MemoryBuffer dicom(context); if (dicom.RestApiGet(uri + "/file", false) && OrthancPluginSendMultipartItem(context, output, dicom.GetData(), dicom.GetSize()) != 0) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } } } } void RetrieveStudyMetadata(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { bool isXml; if (!AcceptMetadata(request, isXml)) { OrthancPluginSendHttpStatusCode(OrthancPlugins::Configuration::GetContext(), output, 400 /* Bad request */); } else { std::string uri; if (LocateStudy(output, uri, request)) { AnswerMetadata(output, request, uri, false, isXml); } } } void RetrieveSeriesMetadata(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { bool isXml; if (!AcceptMetadata(request, isXml)) { OrthancPluginSendHttpStatusCode(OrthancPlugins::Configuration::GetContext(), output, 400 /* Bad request */); } else { std::string uri; if (LocateSeries(output, uri, request)) { AnswerMetadata(output, request, uri, false, isXml); } } } void RetrieveInstanceMetadata(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { bool isXml; if (!AcceptMetadata(request, isXml)) { OrthancPluginSendHttpStatusCode(OrthancPlugins::Configuration::GetContext(), output, 400 /* Bad request */); } else { std::string uri; if (LocateInstance(output, uri, request)) { AnswerMetadata(output, request, uri, true, isXml); } } } static uint32_t Hex2Dec(char c) { return (c >= '0' && c <= '9') ? c - '0' : c - 'a' + 10; } static bool ParseBulkTag(gdcm::Tag& tag, const std::string& s) { if (s.size() != 8) { return false; } for (size_t i = 0; i < 8; i++) { if ((s[i] < '0' || s[i] > '9') && (s[i] < 'a' || s[i] > 'f')) { return false; } } uint32_t g = ((Hex2Dec(s[0]) << 12) + (Hex2Dec(s[1]) << 8) + (Hex2Dec(s[2]) << 4) + Hex2Dec(s[3])); uint32_t e = ((Hex2Dec(s[4]) << 12) + (Hex2Dec(s[5]) << 8) + (Hex2Dec(s[6]) << 4) + Hex2Dec(s[7])); tag = gdcm::Tag(g, e); return true; } static bool ExploreBulkData(std::string& content, const std::vector<std::string>& path, size_t position, const gdcm::DataSet& dataset) { gdcm::Tag tag; if (!ParseBulkTag(tag, path[position]) || !dataset.FindDataElement(tag)) { return false; } const gdcm::DataElement& element = dataset.GetDataElement(tag); if (position + 1 == path.size()) { const gdcm::ByteValue* data = element.GetByteValue(); if (!data) { content.clear(); } else { content.assign(data->GetPointer(), data->GetLength()); } return true; } return false; } void RetrieveBulkData(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::Configuration::GetContext(); if (!AcceptBulkData(request)) { OrthancPluginSendHttpStatusCode(context, output, 400 /* Bad request */); return; } std::string uri; OrthancPlugins::MemoryBuffer content(context); if (LocateInstance(output, uri, request) && content.RestApiGet(uri + "/file", false)) { OrthancPlugins::ParsedDicomFile dicom(content); std::vector<std::string> path; Orthanc::Toolbox::TokenizeString(path, request->groups[3], '/'); std::string result; if (path.size() % 2 == 1 && ExploreBulkData(result, path, 0, dicom.GetDataSet())) { if (OrthancPluginStartMultipartAnswer(context, output, "related", "application/octet-stream") != 0 || OrthancPluginSendMultipartItem(context, output, result.c_str(), result.size()) != 0) { throw Orthanc::OrthancException(Orthanc::ErrorCode_Plugin); } } else { OrthancPluginSendHttpStatusCode(context, output, 400 /* Bad request */); } } }