Mercurial > hg > orthanc-dicomweb
view Plugin/WadoRs.cpp @ 16:a90389070513
return US values
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 19 May 2015 13:05:57 +0200 |
parents | 0ed8bbf35577 |
children | c1223564bc80 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "Plugin.h" #include <boost/lexical_cast.hpp> #include "../Core/Configuration.h" #include "../Core/Dicom.h" #include "../Core/DicomResults.h" #include "../Core/MultipartWriter.h" static bool AcceptMultipartDicom(const OrthancPluginHttpRequest* request) { std::string accept; if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) { return true; // By default, return "multipart/related; type=application/dicom;" } std::string application; std::map<std::string, std::string> attributes; OrthancPlugins::ParseContentType(application, attributes, accept); if (application != "multipart/related" && application != "*/*") { std::string s = "This WADO-RS plugin cannot generate the following content type: " + accept; OrthancPluginLogError(context_, s.c_str()); return false; } if (attributes.find("type") != attributes.end()) { std::string s = attributes["type"]; OrthancPlugins::ToLowerCase(s); if (s != "application/dicom") { std::string s = "This WADO-RS plugin only supports application/dicom return type for DICOM retrieval (" + accept + ")"; OrthancPluginLogError(context_, s.c_str()); return false; } } if (attributes.find("transfer-syntax") != attributes.end()) { std::string s = "This WADO-RS plugin cannot change the transfer syntax to " + attributes["transfer-syntax"]; OrthancPluginLogError(context_, s.c_str()); return false; } return true; } static bool AcceptMetadata(const OrthancPluginHttpRequest* request, bool& isXml) { isXml = true; std::string accept; if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) { // By default, return "multipart/related; type=application/dicom+xml;" return true; } std::string application; std::map<std::string, std::string> attributes; OrthancPlugins::ParseContentType(application, attributes, accept); if (application == "application/json") { isXml = false; return true; } if (application != "multipart/related" && application != "*/*") { std::string s = "This WADO-RS plugin cannot generate the following content type: " + accept; OrthancPluginLogError(context_, s.c_str()); return false; } if (attributes.find("type") != attributes.end()) { std::string s = attributes["type"]; OrthancPlugins::ToLowerCase(s); if (s != "application/dicom+xml") { std::string s = "This WADO-RS plugin only supports application/json or application/dicom+xml return types for metadata (" + accept + ")"; OrthancPluginLogError(context_, s.c_str()); return false; } } if (attributes.find("transfer-syntax") != attributes.end()) { std::string s = "This WADO-RS plugin cannot change the transfer syntax to " + attributes["transfer-syntax"]; OrthancPluginLogError(context_, s.c_str()); return false; } return true; } static bool AcceptBulkData(const OrthancPluginHttpRequest* request) { std::string accept; if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) { return true; // By default, return "multipart/related; type=application/octet-stream;" } std::string application; std::map<std::string, std::string> attributes; OrthancPlugins::ParseContentType(application, attributes, accept); if (application != "multipart/related" && application != "*/*") { std::string s = "This WADO-RS plugin cannot generate the following bulk data type: " + accept; OrthancPluginLogError(context_, s.c_str()); return false; } if (attributes.find("type") != attributes.end()) { std::string s = attributes["type"]; OrthancPlugins::ToLowerCase(s); if (s != "application/octet-stream") { std::string s = "This WADO-RS plugin only supports application/octet-stream return type for bulk data retrieval (" + accept + ")"; OrthancPluginLogError(context_, s.c_str()); return false; } } if (attributes.find("ra,ge") != attributes.end()) { std::string s = "This WADO-RS plugin does not support Range retrieval, it can only return entire bulk data object"; OrthancPluginLogError(context_, s.c_str()); return false; } return true; } static int32_t AnswerListOfDicomInstances(OrthancPluginRestOutput* output, const std::string& resource) { Json::Value instances; if (!OrthancPlugins::RestApiGetJson(instances, context_, resource + "/instances")) { // Internal error OrthancPluginSendHttpStatusCode(context_, output, 400); return 0; } OrthancPlugins::MultipartWriter writer("application/dicom"); for (Json::Value::ArrayIndex i = 0; i < instances.size(); i++) { std::string uri = "/instances/" + instances[i]["ID"].asString() + "/file"; std::string dicom; if (OrthancPlugins::RestApiGetString(dicom, context_, uri)) { writer.AddPart(dicom); } } writer.Answer(context_, output); return 0; } static void AnswerMetadata(OrthancPluginRestOutput* output, const std::string& resource, bool isInstance, bool isXml) { std::list<std::string> files; if (isInstance) { files.push_back(resource + "/file"); } else { Json::Value instances; if (!OrthancPlugins::RestApiGetJson(instances, context_, resource + "/instances")) { // Internal error OrthancPluginSendHttpStatusCode(context_, output, 400); return; } for (Json::Value::ArrayIndex i = 0; i < instances.size(); i++) { files.push_back("/instances/" + instances[i]["ID"].asString() + "/file"); } } OrthancPlugins::DicomResults results(*dictionary_, isXml, true); for (std::list<std::string>::const_iterator it = files.begin(); it != files.end(); ++it) { std::string content; if (OrthancPlugins::RestApiGetString(content, context_, *it)) { OrthancPlugins::ParsedDicomFile dicom(content); results.Add(dicom.GetFile()); } } results.Answer(context_, output); } static bool LocateStudy(OrthancPluginRestOutput* output, std::string& uri, const OrthancPluginHttpRequest* request) { if (request->method != OrthancPluginHttpMethod_Get) { OrthancPluginSendMethodNotAllowed(context_, output, "GET"); return false; } std::string id; { char* tmp = OrthancPluginLookupStudy(context_, request->groups[0]); if (tmp == NULL) { std::string s = "Accessing an inexistent study with WADO-RS: " + std::string(request->groups[0]); OrthancPluginLogError(context_, s.c_str()); OrthancPluginSendHttpStatusCode(context_, output, 404); return false; } id.assign(tmp); OrthancPluginFreeString(context_, tmp); } uri = "/studies/" + id; return true; } static bool LocateSeries(OrthancPluginRestOutput* output, std::string& uri, const OrthancPluginHttpRequest* request) { if (request->method != OrthancPluginHttpMethod_Get) { OrthancPluginSendMethodNotAllowed(context_, output, "GET"); return false; } std::string id; { char* tmp = OrthancPluginLookupSeries(context_, request->groups[1]); if (tmp == NULL) { std::string s = "Accessing an inexistent series with WADO-RS: " + std::string(request->groups[1]); OrthancPluginLogError(context_, s.c_str()); OrthancPluginSendHttpStatusCode(context_, output, 404); return false; } id.assign(tmp); OrthancPluginFreeString(context_, tmp); } Json::Value study; if (!OrthancPlugins::RestApiGetJson(study, context_, "/series/" + id + "/study")) { OrthancPluginSendHttpStatusCode(context_, output, 404); return false; } if (study["MainDicomTags"]["StudyInstanceUID"].asString() != std::string(request->groups[0])) { std::string s = "No series " + std::string(request->groups[1]) + " in study " + std::string(request->groups[0]); OrthancPluginLogError(context_, s.c_str()); OrthancPluginSendHttpStatusCode(context_, output, 404); return false; } uri = "/series/" + id; return true; } static bool LocateInstance(OrthancPluginRestOutput* output, std::string& uri, const OrthancPluginHttpRequest* request) { if (request->method != OrthancPluginHttpMethod_Get) { OrthancPluginSendMethodNotAllowed(context_, output, "GET"); return false; } std::string id; { char* tmp = OrthancPluginLookupInstance(context_, request->groups[2]); if (tmp == NULL) { std::string s = "Accessing an inexistent instance with WADO-RS: " + std::string(request->groups[2]); OrthancPluginLogError(context_, s.c_str()); OrthancPluginSendHttpStatusCode(context_, output, 404); return false; } id.assign(tmp); OrthancPluginFreeString(context_, tmp); } Json::Value study, series; if (!OrthancPlugins::RestApiGetJson(series, context_, "/instances/" + id + "/series") || !OrthancPlugins::RestApiGetJson(study, context_, "/instances/" + id + "/study")) { OrthancPluginSendHttpStatusCode(context_, output, 404); return false; } if (study["MainDicomTags"]["StudyInstanceUID"].asString() != std::string(request->groups[0]) || series["MainDicomTags"]["SeriesInstanceUID"].asString() != std::string(request->groups[1])) { std::string s = ("No instance " + std::string(request->groups[2]) + " in study " + std::string(request->groups[0]) + " or " + " in series " + std::string(request->groups[1])); OrthancPluginLogError(context_, s.c_str()); OrthancPluginSendHttpStatusCode(context_, output, 404); return false; } uri = "/instances/" + id; return true; } int32_t RetrieveDicomStudy(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { if (!AcceptMultipartDicom(request)) { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); return 0; } std::string uri; if (LocateStudy(output, uri, request)) { AnswerListOfDicomInstances(output, uri); } return 0; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return -1; } } int32_t RetrieveDicomSeries(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { if (!AcceptMultipartDicom(request)) { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); return 0; } std::string uri; if (LocateSeries(output, uri, request)) { AnswerListOfDicomInstances(output, uri); } return 0; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return -1; } } int32_t RetrieveDicomInstance(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { if (!AcceptMultipartDicom(request)) { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); return 0; } std::string uri; if (LocateInstance(output, uri, request)) { OrthancPlugins::MultipartWriter writer("application/dicom"); std::string dicom; if (OrthancPlugins::RestApiGetString(dicom, context_, uri + "/file")) { writer.AddPart(dicom); } writer.Answer(context_, output); } return 0; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return -1; } } int32_t RetrieveStudyMetadata(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { bool isXml; if (!AcceptMetadata(request, isXml)) { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); return 0; } std::string uri; if (LocateStudy(output, uri, request)) { AnswerMetadata(output, uri, false, isXml); } return 0; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return -1; } } int32_t RetrieveSeriesMetadata(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { bool isXml; if (!AcceptMetadata(request, isXml)) { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); return 0; } std::string uri; if (LocateSeries(output, uri, request)) { AnswerMetadata(output, uri, false, isXml); } return 0; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return -1; } } int32_t RetrieveInstanceMetadata(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { bool isXml; if (!AcceptMetadata(request, isXml)) { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); return 0; } std::string uri; if (LocateInstance(output, uri, request)) { AnswerMetadata(output, uri, true, isXml); } return 0; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return -1; } } static uint32_t Hex2Dec(char c) { return (c >= '0' && c <= '9') ? c - '0' : c - 'a' + 10; } static bool ParseBulkTag(gdcm::Tag& tag, const std::string& s) { if (s.size() != 8) { return false; } for (size_t i = 0; i < 8; i++) { if ((s[i] < '0' || s[i] > '9') && (s[i] < 'a' || s[i] > 'f')) { return false; } } uint32_t g = ((Hex2Dec(s[0]) << 12) + (Hex2Dec(s[1]) << 8) + (Hex2Dec(s[2]) << 4) + Hex2Dec(s[3])); uint32_t e = ((Hex2Dec(s[4]) << 12) + (Hex2Dec(s[5]) << 8) + (Hex2Dec(s[6]) << 4) + Hex2Dec(s[7])); tag = gdcm::Tag(g, e); return true; } static bool ExploreBulkData(std::string& content, const std::vector<std::string>& path, size_t position, const gdcm::DataSet& dataset) { gdcm::Tag tag; if (!ParseBulkTag(tag, path[position]) || !dataset.FindDataElement(tag)) { return false; } const gdcm::DataElement& element = dataset.GetDataElement(tag); if (position + 1 == path.size()) { const gdcm::ByteValue* data = element.GetByteValue(); if (!data) { content.clear(); } else { content.assign(data->GetPointer(), data->GetLength()); } return true; } return false; } int32_t RetrieveBulkData(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { if (!AcceptBulkData(request)) { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); return 0; } std::string uri, content; if (LocateInstance(output, uri, request) && OrthancPlugins::RestApiGetString(content, context_, uri + "/file")) { OrthancPlugins::ParsedDicomFile dicom(content); std::vector<std::string> path; OrthancPlugins::TokenizeString(path, request->groups[3], '/'); std::string result; if (path.size() % 2 == 1 && ExploreBulkData(result, path, 0, dicom.GetDataSet())) { OrthancPlugins::MultipartWriter writer("application/octet-stream"); writer.AddPart(result); writer.Answer(context_, output); } else { OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); } } return 0; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return -1; } }