view Usage.txt @ 433:a87a69e6648b OrthancDicomWeb-0.3

closing OrthancDicomWeb-0.3
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 26 May 2020 11:05:28 +0200
parents 4ff789abc494
children
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=============
Configuration
=============

(1) You must change the Orthanc configuration file to tell Orthanc
    where it can find the DICOMweb plugin. This is done by properly
    modifying the "Plugins" configuration option of Orthanc. For
    instance, in Linux:

{
  ...
  "Plugins" : [
    "/home/user/OrthancDicomWeb/Build/libOrthancDicomWeb.so"
  ]
  ...
}

    Or in Windows:

{
  ...
  "Plugins" : [
    "c:/Temp/OrthancDicomWeb.dll"
  ]
  ...
}

    Note that the DICOMweb server will share all the parameters of the
    Orthanc HTTP server, notably wrt. authentication and HTTPS
    encryption. For this reason, you will most probably have to enable
    the remote access to the Orthanc HTTP server:

{
  ...
  "RemoteAccessEnabled" : true
  ...
}


(2) There are several configuration options that can be set to
    fine-tune the Orthanc DICOMweb server. Here is the full list of
    the available options, all of them must be grouped inside the
    "DicomWeb" section of the Orthanc configuration file:

{
  ...
  "DicomWeb" : {
    "Enable" : true,          // Whether DICOMweb support is enabled
    "Root" : "/dicom-web/",   // Root URI of the DICOMweb API (for QIDO-RS, STOW-RS and WADO-RS)
    "EnableWado" : true,      // Whether WADO-URI (previously known as WADO) support is enabled
    "WadoRoot" : "/wado",     // Root URI of the WADO-URI (aka. WADO) API
    "Host" : "localhost",     // Hard-codes the name of the host for subsequent WADO-RS requests
    "Ssl" : false,            // Whether HTTPS should be used for subsequent WADO-RS requests
    "StowMaxInstances" : 10,  // For STOW-RS client, the maximum number of instances in one single HTTP query (0 = no limit)
    "StowMaxSize" : 10        // For STOW-RS client, the maximum size of the body in one single HTTP query (in MB, 0 = no limit)
  }
  ...
}


(3) If you want to connect Orthanc as a client to remote DICOMweb
    servers (cf. below), you need to modify the configuration file so
    as to define each of them in the option "DicomWeb.Servers".  The
    syntax is identical to the "OrthancPeers" parameters.

    In the most simple case, here is how to instruct Orthanc about the
    existence of a password-less DICOMweb server that will be refered
    to as "sample" in Orthanc:

{
  ...
  "DicomWeb" : {
    "Servers" : {
      "sample" : [ "http://192.168.1.1/dicom-web/" ]
    }
  }
  ...
}

    You are of course free to add as many DICOMweb servers as you
    need. If the DICOMweb server is protected by a password (with HTTP
    Basic access authentication):

{
  ...
  "DicomWeb" : {
    "Servers" : {
      "sample" : [ "http://192.168.1.1/dicom-web/", "username", "password" ]
    }
  }
  ...
}

    If the DICOMweb server is protected with HTTPS client
    authentication, you must provide your client certificate (in the
    PEM format), your client private key (in the PEM format), together
    with the password protecting the private key:

{
  ...
  "DicomWeb" : {
    "Servers" : {
      "sample" : {
        "Url" : "http://192.168.1.1/dicom-web/", 
        "CertificateFile" : "client.crt",
        "CertificateKeyFile" : "client.key",
        "CertificateKeyPassword" : "password"
      }
    }
  }
  ...
}

    Finally, it is also possible to use client authentication with
    hardware security modules and smart cards through PKCS#11 (this
    feature is only available is the core of Orthanc was compiled with
    the "-DENABLE_PKCS11=ON" option in CMake, and if the Orthanc
    configuration file has a proper "Pkcs11" section):

{
  ...
  "DicomWeb" : {
    "Servers" : {
      "sample" : {
        "Url" : "http://192.168.1.1/dicom-web/", 
        "Pkcs11" : true
      }
    }
  }
  ...
}

    Important remark: When querying a DICOMweb server, Orthanc will
    automatically use the global configuration options "HttpProxy",
    "HttpTimeout", "HttpsVerifyPeers", "HttpsCACertificates", and
    "Pkcs11". Make sure to adapt them if need be.



=================================
Querying a remote DICOMweb server
=================================

Listing the available servers
-----------------------------

The list of the remote DICOMweb servers that are known to the DICOMweb
plugin can be obtained as follows:

# curl http://localhost:8042/dicom-web/servers/
[ "sample" ]

Here, a single server called "sample" is configured.


Making a call to QIDO-RS or WADO-RS
-----------------------------------

In Orthanc, the URI "/{dicom-web}/servers/{name}/get" allows to make a
HTTP GET call against a DICOMweb server. This can be used to issue a
QIDO-RS or WADO-RS command. Orthanc will take care of properly
encoding the URL and authenticating the client.

For instance, here is a sample QIDO-RS search to query all the
studies (using a bash command-line):

# curl http://localhost:8042/dicom-web/servers/sample/get -d @- << EOF
{
  "Uri" : "/studies"
}
EOF

You do not have to specify the base URL of the remote DICOMweb server,
as it is encoded in the configuration file.

The result of the command above is a multipart "application/dicom+xml"
document.  It is possible to request a more human-friendly JSON answer
by adding the "Accept" HTTP header. Here is how to search for a given
patient name, while requesting a JSON answer and pretty-printing
through the "json_pp" command-line tool:

# curl http://localhost:8042/dicom-web/servers/sample/get -d @- << EOF | json_pp 
{
  "Uri" : "/studies",
  "HttpHeaders" : {
    "Accept" : "application/json"
  },
  "Arguments" : {
    "00100010" : "*JODOGNE*"
  }
}
EOF

Note how all the GET arguments must be specified in the "Arguments"
field. Orthanc will take care of properly encoding it to a URL.

An user-friendly reference of the features available in QIDO-RS and
WADO-RS can be found at http://dicomweb.hcintegrations.ca/#/home


Sending DICOM resources to a STOW-RS server
-------------------------------------------

STOW-RS allows to send local DICOM resources to a remote DICOMweb
server. In Orthanc, the STOW-RS client primitive is available at URI
"/{dicom-web}/servers/{name}/stow". Here is a sample call:

# curl http://localhost:8042/dicom-web/servers/sample/stow -X POST -d @- << EOF
{
  "Resources" : [
    "6ca4c9f3-5e895cb3-4d82c6da-09e060fe-9c59f228"
  ]
}
EOF

Note that this primitive takes as its input a list of Orthanc
identifiers corresponding to the resources (patients, studies, series
and/or instances) to be exported:
https://orthanc.chu.ulg.ac.be/book/faq/orthanc-ids.html

Remark 1: Additional HTTP headers can be added with an optional
"HttpHeaders" argument, as for QIDO-RS and WADO-RS. This might be
useful e.g. for cookie-based session management.

Remark 2: One call to this "/stow" primitive will possibly result in
several HTTP requests to the DICOMweb server, in order to limit the
size of the HTTP messages. The configuration options
"DicomWeb.StowMaxInstances" and "DicomWeb.StowMaxSize" can be used to
tune this behavior (set both options to 0 to send one single request).


Retrieving DICOM resources from a WADO-RS server
------------------------------------------------

Once DICOM resources of interest have been identified through a
QIDO-RS call to a remote DICOMweb server (cf. above), it is
interesting to download them locally with a WADO-RS call. You could do
it manually with a second call to the
"/{dicom-web}/servers/{name}/get" URI, but Orthanc provides another
primitive "/retrieve" to automate this process.

Here is how you would download one study, one series and one instance
whose StudyInstanceUID (0020,000d), SeriesInstanceUID (0020,000e) are
SOPInstanceUID (0008,0018) have been identified through a former
QIDO-RS call:

# curl http://localhost:8042/dicom-web/servers/sample/retrieve -X POST -d @- << EOF
{
  "Resources" : [
    {
      "Study" : "1.3.51.0.1.1.192.168.29.133.1688840.1688819"
    },
    {
      "Study" : "1.3.51.0.1.1.192.168.29.133.1681753.1681732",
      "Series" : "1.3.12.2.1107.5.2.33.37097.2012041613040617636372171.0.0.0"
    },
    {
      "Study" : "1.3.51.0.1.1.192.168.29.133.1681753.1681732",
      "Series" : "1.3.12.2.1107.5.2.33.37097.2012041612474981424569674.0.0.0",
      "Instance" : "1.3.12.2.1107.5.2.33.37097.2012041612485540185869716"
    }
  ]
}
EOF

Orthanc will reply with the list of the Orthanc identifiers of all the
DICOM instances that were downloaded from the remote server.

Remark 1: Contrarily to the "/stow" URI that uses Orthanc identifiers,
the "/retrieve" URI uses DICOM identifiers.

Remark 2: The "HttpArguments" is also available.



=======
Samples
=======

Samples of how to call DICOMweb services from standalone applications
can be found in the following folders:

- In Python: see ./Resources/Samples/Python/
- In JavaScript: see ./Resources/Samples/Python/