Mercurial > hg > orthanc-dicomweb
view Plugin/DicomResults.cpp @ 132:972a2cca130d dev
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 24 Jun 2016 11:56:09 +0200 |
parents | 17c916a8bc65 |
children | ac2adc1afd3c |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "DicomResults.h" #include "Dicom.h" #include "../Orthanc/Core/Toolbox.h" #include "../Orthanc/Plugins/Samples/Common/OrthancPluginCppWrapper.h" #include <boost/lexical_cast.hpp> #include <boost/noncopyable.hpp> namespace OrthancPlugins { DicomResults::DicomResults(OrthancPluginContext* context, OrthancPluginRestOutput* output, const std::string& wadoBase, const gdcm::Dict& dictionary, bool isXml, bool isBulkAccessible) : context_(context), output_(output), wadoBase_(wadoBase), dictionary_(dictionary), isFirst_(true), isXml_(isXml), isBulkAccessible_(isBulkAccessible) { if (isXml_ && OrthancPluginStartMultipartAnswer(context_, output_, "related", "application/dicom+xml") != 0) { OrthancPlugins::Configuration::LogError("Unable to create a multipart stream of DICOM+XML answers"); throw OrthancPlugins::PluginException(OrthancPluginErrorCode_NetworkProtocol); } jsonWriter_.AddChunk("[\n"); } void DicomResults::AddInternal(const std::string& item) { if (isXml_) { if (OrthancPluginSendMultipartItem(context_, output_, item.c_str(), item.size()) != 0) { OrthancPlugins::Configuration::LogError("Unable to create a multipart stream of DICOM+XML answers"); throw OrthancPlugins::PluginException(OrthancPluginErrorCode_NetworkProtocol); } } else { if (!isFirst_) { jsonWriter_.AddChunk(",\n"); } jsonWriter_.AddChunk(item); } isFirst_ = false; } void DicomResults::AddInternal(const gdcm::File* file, const gdcm::DataSet& dicom) { std::string item; if (isXml_) { GenerateSingleDicomAnswer(item, wadoBase_, dictionary_, file, dicom, true, isBulkAccessible_); } else { GenerateSingleDicomAnswer(item, wadoBase_, dictionary_, file, dicom, false, isBulkAccessible_); } AddInternal(item); isFirst_ = false; } namespace { class ITagVisitor : public boost::noncopyable { public: virtual ~ITagVisitor() { } virtual void Visit(const gdcm::Tag& tag, bool isSequence, const std::string& vr, const std::string& type, const Json::Value& value) = 0; static void Apply(ITagVisitor& visitor, const Json::Value& source, const gdcm::Dict& dictionary) { if (source.type() != Json::objectValue) { throw OrthancPlugins::PluginException(OrthancPluginErrorCode_InternalError); } Json::Value::Members members = source.getMemberNames(); for (size_t i = 0; i < members.size(); i++) { if (members[i].size() != 9 || members[i][4] != ',' || source[members[i]].type() != Json::objectValue || !source[members[i]].isMember("Value") || !source[members[i]].isMember("Type") || source[members[i]]["Type"].type() != Json::stringValue) { throw OrthancPlugins::PluginException(OrthancPluginErrorCode_InternalError); } const Json::Value& value = source[members[i]]["Value"]; const std::string type = source[members[i]]["Type"].asString(); gdcm::Tag tag(OrthancPlugins::ParseTag(dictionary, members[i])); bool isSequence = false; std::string vr = GetVRName(isSequence, dictionary, tag); if (tag == DICOM_TAG_RETRIEVE_URL) { // The VR of this attribute has changed from UT to UR. vr = "UR"; } else { vr = GetVRName(isSequence, dictionary, tag); } visitor.Visit(tag, isSequence, vr, type, value); } } }; class TagVisitorBase : public ITagVisitor { protected: const Json::Value& source_; const gdcm::Dict& dictionary_; const std::string& bulkUri_; public: TagVisitorBase(const Json::Value& source, const gdcm::Dict& dictionary, const std::string& bulkUri) : source_(source), dictionary_(dictionary), bulkUri_(bulkUri) { } }; class JsonVisitor : public TagVisitorBase { private: Json::Value& target_; public: JsonVisitor(Json::Value& target, const Json::Value& source, const gdcm::Dict& dictionary, const std::string& bulkUri) : TagVisitorBase(source, dictionary, bulkUri), target_(target) { target_ = Json::objectValue; } virtual void Visit(const gdcm::Tag& tag, bool isSequence, const std::string& vr, const std::string& type, const Json::Value& value) { const std::string formattedTag = OrthancPlugins::FormatTag(tag); Json::Value node = Json::objectValue; node["vr"] = vr; bool ok = false; if (isSequence) { // Deal with sequences if (type != "Sequence" || value.type() != Json::arrayValue) { throw OrthancPlugins::PluginException(OrthancPluginErrorCode_InternalError); } node["Value"] = Json::arrayValue; for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) { if (value[i].type() != Json::objectValue) { throw OrthancPlugins::PluginException(OrthancPluginErrorCode_InternalError); } Json::Value child; std::string childUri; if (!bulkUri_.empty()) { std::string number = boost::lexical_cast<std::string>(i); childUri = bulkUri_ + formattedTag + "/" + number + "/"; } JsonVisitor visitor(child, value[i], dictionary_, childUri); JsonVisitor::Apply(visitor, value[i], dictionary_); node["Value"].append(child); } ok = true; } else if (type == "String" && value.type() == Json::stringValue) { // Deal with string representations node["Value"] = Json::arrayValue; node["Value"].append(value.asString()); ok = true; } else { // Bulk data if (!bulkUri_.empty()) { node["BulkDataURI"] = bulkUri_ + formattedTag; ok = true; } } if (ok) { target_[formattedTag] = node; } } }; class XmlVisitor : public TagVisitorBase { private: pugi::xml_node& target_; public: XmlVisitor(pugi::xml_node& target, const Json::Value& source, const gdcm::Dict& dictionary, const std::string& bulkUri) : TagVisitorBase(source, dictionary, bulkUri), target_(target) { } virtual void Visit(const gdcm::Tag& tag, bool isSequence, const std::string& vr, const std::string& type, const Json::Value& value) { const std::string formattedTag = OrthancPlugins::FormatTag(tag); pugi::xml_node node = target_.append_child("DicomAttribute"); node.append_attribute("tag").set_value(formattedTag.c_str()); node.append_attribute("vr").set_value(vr.c_str()); const char* keyword = GetKeyword(dictionary_, tag); if (keyword != NULL) { node.append_attribute("keyword").set_value(keyword); } if (isSequence) { // Deal with sequences if (type != "Sequence" || value.type() != Json::arrayValue) { throw OrthancPlugins::PluginException(OrthancPluginErrorCode_InternalError); } for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) { if (value[i].type() != Json::objectValue) { throw OrthancPlugins::PluginException(OrthancPluginErrorCode_InternalError); } pugi::xml_node child = node.append_child("Item"); std::string number = boost::lexical_cast<std::string>(i + 1); child.append_attribute("number").set_value(number.c_str()); std::string childUri; if (!bulkUri_.empty()) { childUri = bulkUri_ + formattedTag + "/" + number + "/"; } XmlVisitor visitor(child, value[i], dictionary_, childUri); XmlVisitor::Apply(visitor, value[i], dictionary_); } } else if (type == "String" && value.type() == Json::stringValue) { // Deal with string representations pugi::xml_node item = node.append_child("Value"); item.append_attribute("number").set_value("1"); item.append_child(pugi::node_pcdata).set_value(value.asCString()); } else { // Bulk data if (!bulkUri_.empty()) { pugi::xml_node value = node.append_child("BulkData"); std::string uri = bulkUri_ + formattedTag; value.append_attribute("uri").set_value(uri.c_str()); } } } }; } static void OrthancToDicomWebXml(pugi::xml_document& target, const Json::Value& source, const gdcm::Dict& dictionary, const std::string& bulkUriRoot) { pugi::xml_node root = target.append_child("NativeDicomModel"); root.append_attribute("xmlns").set_value("http://dicom.nema.org/PS3.19/models/NativeDICOM"); root.append_attribute("xsi:schemaLocation").set_value("http://dicom.nema.org/PS3.19/models/NativeDICOM"); root.append_attribute("xmlns:xsi").set_value("http://www.w3.org/2001/XMLSchema-instance"); XmlVisitor visitor(root, source, dictionary, bulkUriRoot); ITagVisitor::Apply(visitor, source, dictionary); pugi::xml_node decl = target.prepend_child(pugi::node_declaration); decl.append_attribute("version").set_value("1.0"); decl.append_attribute("encoding").set_value("utf-8"); } void DicomResults::AddFromOrthanc(const Json::Value& dicom, const std::string& wadoUrl) { std::string bulkUriRoot; if (isBulkAccessible_) { bulkUriRoot = wadoUrl + "bulk/"; } if (isXml_) { pugi::xml_document doc; OrthancToDicomWebXml(doc, dicom, dictionary_, bulkUriRoot); ChunkedBufferWriter writer; doc.save(writer, " ", pugi::format_default, pugi::encoding_utf8); std::string item; writer.Flatten(item); AddInternal(item); } else { Json::Value v; JsonVisitor visitor(v, dicom, dictionary_, bulkUriRoot); ITagVisitor::Apply(visitor, dicom, dictionary_); Json::FastWriter writer; AddInternal(writer.write(v)); } } void DicomResults::Answer() { if (isXml_) { // Nothing to do in this case } else { jsonWriter_.AddChunk("]\n"); std::string answer; jsonWriter_.Flatten(answer); OrthancPluginAnswerBuffer(context_, output_, answer.c_str(), answer.size(), "application/json"); } } }