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view Plugin/DicomWebClient.cpp @ 493:712d8e7a1add
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 26 Jan 2021 19:22:05 +0100 |
parents | 327acd0232d8 |
children | 0611b666285c |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2021 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "DicomWebClient.h" #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" #include "DicomWebServers.h" #include <ChunkedBuffer.h> #include <Compatibility.h> #include <HttpServer/MultipartStreamReader.h> #include <Logging.h> #include <Toolbox.h> #include <list> #include <set> #include <boost/lexical_cast.hpp> #include <boost/thread.hpp> #include <boost/algorithm/string/predicate.hpp> static const std::string HAS_WADO_RS_UNIVERSAL_TRANSFER_SYNTAX = "HasWadoRsUniversalTransferSyntax"; class SingleFunctionJob : public OrthancPlugins::OrthancJob { public: class JobContext : public boost::noncopyable { private: SingleFunctionJob& that_; public: explicit JobContext(SingleFunctionJob& that) : that_(that) { } void SetContent(const std::string& key, const std::string& value) { that_.SetContent(key, value); } void SetProgress(unsigned int position, unsigned int maxPosition) { boost::mutex::scoped_lock lock(that_.mutex_); if (maxPosition == 0 || position > maxPosition) { that_.UpdateProgress(1); } else { that_.UpdateProgress(static_cast<float>(position) / static_cast<float>(maxPosition)); } } }; class IFunction : public boost::noncopyable { public: virtual ~IFunction() { } virtual void Execute(JobContext& context) = 0; }; class IFunctionFactory : public boost::noncopyable { public: virtual ~IFunctionFactory() { } // Called when the job is paused or canceled. WARNING: // "CancelFunction()" will be invoked while "Execute()" is // running. Mutex is probably necessary. virtual void CancelFunction() = 0; virtual void PauseFunction() = 0; virtual IFunction* CreateFunction() = 0; }; protected: void SetFactory(IFunctionFactory& factory) { boost::mutex::scoped_lock lock(mutex_); if (factory_ != NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); } else { factory_ = &factory; } } private: enum FunctionResult { FunctionResult_Running, FunctionResult_Done, FunctionResult_Failure }; boost::mutex mutex_; FunctionResult functionResult_; // Can only be modified by the "Worker()" function std::unique_ptr<boost::thread> worker_; Json::Value content_; IFunctionFactory* factory_; bool stopping_; void JoinWorker() { assert(factory_ != NULL); if (worker_.get() != NULL) { if (worker_->joinable()) { worker_->join(); } worker_.reset(); } } void StartWorker() { assert(factory_ != NULL); if (worker_.get() == NULL) { stopping_ = false; worker_.reset(new boost::thread(Worker, this, factory_)); } } void SetContent(const std::string& key, const std::string& value) { boost::mutex::scoped_lock lock(mutex_); content_[key] = value; UpdateContent(content_); } static void Worker(SingleFunctionJob* job, IFunctionFactory* factory) { assert(job != NULL && factory != NULL); try { JobContext context(*job); std::unique_ptr<IFunction> function(factory->CreateFunction()); function->Execute(context); { boost::mutex::scoped_lock lock(job->mutex_); job->functionResult_ = FunctionResult_Done; } } catch (Orthanc::OrthancException& e) { LOG(ERROR) << "Error in a job: " << e.What(); { boost::mutex::scoped_lock lock(job->mutex_); job->functionResult_ = FunctionResult_Failure; if (!job->stopping_) { // Don't report exceptions that are a consequence of stopping the function job->content_["FunctionErrorCode"] = e.GetErrorCode(); job->content_["FunctionErrorDescription"] = e.What(); if (e.HasDetails()) { job->content_["FunctionErrorDetails"] = e.GetDetails(); } job->UpdateContent(job->content_); } } } } public: explicit SingleFunctionJob(const std::string& jobName) : OrthancJob(jobName), functionResult_(FunctionResult_Running), content_(Json::objectValue), factory_(NULL), stopping_(false) { } virtual ~SingleFunctionJob() { if (worker_.get() != NULL) { LOG(ERROR) << "Classes deriving from SingleFunctionJob must " << "explicitly call Finalize() in their destructor"; Finalize(); } } void Finalize() { try { Stop(OrthancPluginJobStopReason_Canceled); } catch (Orthanc::OrthancException&) { } } virtual OrthancPluginJobStepStatus Step() ORTHANC_OVERRIDE { if (factory_ == NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); } FunctionResult result; { boost::mutex::scoped_lock lock(mutex_); result = functionResult_; } switch (result) { case FunctionResult_Running: StartWorker(); boost::this_thread::sleep(boost::posix_time::milliseconds(500)); return OrthancPluginJobStepStatus_Continue; case FunctionResult_Done: JoinWorker(); return OrthancPluginJobStepStatus_Success; case FunctionResult_Failure: JoinWorker(); return OrthancPluginJobStepStatus_Failure; default: throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } } virtual void Stop(OrthancPluginJobStopReason reason) ORTHANC_OVERRIDE { if (factory_ == NULL) { return; } else if (reason == OrthancPluginJobStopReason_Paused || reason == OrthancPluginJobStopReason_Canceled) { stopping_ = true; if (reason == OrthancPluginJobStopReason_Paused) { factory_->PauseFunction(); } else { factory_->CancelFunction(); } JoinWorker(); // Be ready for the next possible call to "Step()" that will resume the function functionResult_ = FunctionResult_Running; } } virtual void Reset() ORTHANC_OVERRIDE { boost::mutex::scoped_lock lock(mutex_); assert(worker_.get() == NULL); functionResult_ = FunctionResult_Running; content_ = Json::objectValue; ClearContent(); } }; static const std::string MULTIPART_RELATED = "multipart/related"; static void SubmitJob(OrthancPluginRestOutput* output, OrthancPlugins::OrthancJob* job, const Json::Value& body, bool defaultSynchronous) { std::unique_ptr<OrthancPlugins::OrthancJob> protection(job); bool synchronous; bool b; if (OrthancPlugins::LookupBooleanValue(b, body, "Synchronous")) { synchronous = b; } else if (OrthancPlugins::LookupBooleanValue(b, body, "Asynchronous")) { synchronous = !b; } else { synchronous = defaultSynchronous; } int priority; if (!OrthancPlugins::LookupIntegerValue(priority, body, "Priority")) { priority = 0; } Json::Value answer; if (synchronous) { OrthancPlugins::OrthancJob::SubmitAndWait(answer, protection.release(), priority); } else { std::string jobId = OrthancPlugins::OrthancJob::Submit(protection.release(), priority); answer = Json::objectValue; answer["ID"] = jobId; answer["Path"] = OrthancPlugins::RemoveMultipleSlashes ("../" + OrthancPlugins::Configuration::GetOrthancApiRoot() + "/jobs/" + jobId); } std::string s = answer.toStyledString(); OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json"); } static void AddInstance(std::list<std::string>& target, const Json::Value& instance) { std::string id; if (OrthancPlugins::LookupStringValue(id, instance, "ID")) { target.push_back(id); } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } } static bool GetSequenceSize(size_t& result, const Json::Value& answer, const std::string& tag, bool isMandatory, const std::string& server) { const Json::Value* value = NULL; std::string upper, lower; Orthanc::Toolbox::ToUpperCase(upper, tag); Orthanc::Toolbox::ToLowerCase(lower, tag); if (answer.isMember(upper)) { value = &answer[upper]; } else if (answer.isMember(lower)) { value = &answer[lower]; } else if (isMandatory) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The STOW-RS JSON response from DICOMweb server " + server + " does not contain the mandatory tag " + upper); } else { return false; } if (value->type() != Json::objectValue || (value->isMember("Value") && (*value) ["Value"].type() != Json::arrayValue)) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "Unable to parse STOW-RS JSON response from DICOMweb server " + server); } if (value->isMember("Value")) { result = (*value) ["Value"].size(); } else { result = 0; } return true; } static void CheckStowAnswer(const Json::Value& response, const std::string& serverName, size_t instancesCount) { if (response.type() != Json::objectValue || !response.isMember("00081199")) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "Unable to parse STOW-RS JSON response from DICOMweb server " + serverName); } size_t size; if (!GetSequenceSize(size, response, "00081199", true, serverName) || size != instancesCount) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The STOW-RS server was only able to receive " + boost::lexical_cast<std::string>(size) + " instances out of " + boost::lexical_cast<std::string>(instancesCount)); } if (GetSequenceSize(size, response, "00081198", false, serverName) && size != 0) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The response from the STOW-RS server contains " + boost::lexical_cast<std::string>(size) + " items in its Failed SOP Sequence (0008,1198) tag"); } if (GetSequenceSize(size, response, "0008119A", false, serverName) && size != 0) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The response from the STOW-RS server contains " + boost::lexical_cast<std::string>(size) + " items in its Other Failures Sequence (0008,119A) tag"); } } static void ParseStowRequest(std::list<std::string>& instances /* out */, std::map<std::string, std::string>& httpHeaders /* out */, const Json::Value& body /* in */) { static const char* RESOURCES = "Resources"; static const char* HTTP_HEADERS = "HttpHeaders"; if (body.type() != Json::objectValue || !body.isMember(RESOURCES) || body[RESOURCES].type() != Json::arrayValue) { throw Orthanc::OrthancException( Orthanc::ErrorCode_BadFileFormat, "A request to the DICOMweb STOW-RS client must provide a JSON object " "with the field \"" + std::string(RESOURCES) + "\" containing an array of resources to be sent"); } OrthancPlugins::ParseAssociativeArray(httpHeaders, body, HTTP_HEADERS); const Json::Value& resources = body[RESOURCES]; // Extract information about all the child instances for (Json::Value::ArrayIndex i = 0; i < resources.size(); i++) { if (resources[i].type() != Json::stringValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } std::string resource = resources[i].asString(); if (resource.empty()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } // Test whether this resource is an instance Json::Value tmp; if (OrthancPlugins::RestApiGet(tmp, "/instances/" + resource, false)) { AddInstance(instances, tmp); } // This was not an instance, successively try with series/studies/patients else if ((OrthancPlugins::RestApiGet(tmp, "/series/" + resource, false) && OrthancPlugins::RestApiGet(tmp, "/series/" + resource + "/instances", false)) || (OrthancPlugins::RestApiGet(tmp, "/studies/" + resource, false) && OrthancPlugins::RestApiGet(tmp, "/studies/" + resource + "/instances", false)) || (OrthancPlugins::RestApiGet(tmp, "/patients/" + resource, false) && OrthancPlugins::RestApiGet(tmp, "/patients/" + resource + "/instances", false))) { if (tmp.type() != Json::arrayValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } for (Json::Value::ArrayIndex j = 0; j < tmp.size(); j++) { AddInstance(instances, tmp[j]); } } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } } } class StowClientJob : public SingleFunctionJob, private SingleFunctionJob::IFunctionFactory { private: enum Action { Action_None, Action_Pause, Action_Cancel }; boost::mutex mutex_; std::string serverName_; std::vector<std::string> instances_; OrthancPlugins::HttpClient::HttpHeaders headers_; std::string boundary_; size_t position_; Action action_; size_t networkSize_; bool debug_; bool ReadNextInstance(std::string& dicom, JobContext& context) { boost::mutex::scoped_lock lock(mutex_); if (action_ != Action_None) { return false; } while (position_ < instances_.size()) { context.SetProgress(position_, instances_.size()); size_t i = position_++; if (debug_) { boost::this_thread::sleep(boost::posix_time::milliseconds(100)); } if (OrthancPlugins::RestApiGetString(dicom, "/instances/" + instances_[i] + "/file", false)) { networkSize_ += dicom.size(); context.SetContent("NetworkSizeMB", boost::lexical_cast<std::string> (networkSize_ / static_cast<uint64_t>(1024 * 1024))); return true; } } return false; } class RequestBody : public OrthancPlugins::HttpClient::IRequestBody { private: StowClientJob& that_; JobContext& context_; std::string boundary_; bool done_; size_t processedSize_; public: RequestBody(StowClientJob& that, JobContext& context) : that_(that), context_(context), boundary_(that.boundary_), done_(false), processedSize_(0) { } virtual bool ReadNextChunk(std::string& chunk) ORTHANC_OVERRIDE { if (done_) { context_.SetProgress(1, 1); return false; } else { std::string dicom; if (that_.ReadNextInstance(dicom, context_)) { chunk = ("--" + boundary_ + "\r\n" + "Content-Type: application/dicom\r\n" + "Content-Length: " + boost::lexical_cast<std::string>(dicom.size()) + "\r\n\r\n" + dicom + "\r\n"); } else { done_ = true; chunk = ("--" + boundary_ + "--"); } //boost::this_thread::sleep(boost::posix_time::seconds(1)); processedSize_ += chunk.size(); return true; } } size_t GetProcessedSize() const { return processedSize_; } }; class F : public IFunction { private: StowClientJob& that_; public: explicit F(StowClientJob& that) : that_(that) { } virtual void Execute(JobContext& context) { std::string serverName; size_t startPosition; // The lifetime of "body" should be larger than "client" std::unique_ptr<RequestBody> body; std::unique_ptr<OrthancPlugins::HttpClient> client; { boost::mutex::scoped_lock lock(that_.mutex_); context.SetContent("InstancesCount", boost::lexical_cast<std::string>(that_.instances_.size())); serverName = that_.serverName_; startPosition = that_.position_; body.reset(new RequestBody(that_, context)); client.reset(new OrthancPlugins::HttpClient); std::map<std::string, std::string> userProperties; OrthancPlugins::DicomWebServers::GetInstance().ConfigureHttpClient(*client, userProperties, serverName, "/studies"); client->SetMethod(OrthancPluginHttpMethod_Post); client->AddHeaders(that_.headers_); } OrthancPlugins::HttpClient::HttpHeaders answerHeaders; Json::Value answerBody; assert(client.get() != NULL); client->SetBody(*body); try { client->Execute(answerHeaders, answerBody); } catch (Orthanc::OrthancException&) { if (client->GetHttpStatus() == 411) { /** * "Length required" error. This might indicate an older * version of Orthanc (<= 1.5.6) that does not support * chunked transfers, or a version of Orthanc <= 1.7.2 that * supports chunk transfers, but cannot receive multipart * messages larger than 2GB. The latter problem is fixed by: * https://hg.orthanc-server.com/orthanc/rev/36257d6f348f **/ if (client->IsChunkedTransfersAllowed()) { LOG(ERROR) << "The remote DICOMweb server \"" << serverName << "\" does not support chunked transfers " << "(this might indicate Orthanc <= 1.5.6), set configuration option \"ChunkedTransfers\" " << "to \"false\" in the configuration (or upgrade remote Orthanc if applicable)"; } else if (body->GetProcessedSize() >= 2 * static_cast<uint64_t>(1024 * 1024 * 1024)) { LOG(ERROR) << "Cannot send a study larger than 2GB (chunked transfer is disabled) using STOW-RS, " << "this might indicate that the remote DICOMweb server is Orthanc <= 1.7.2 " << "(if so, please upgrade the remote Orthanc)"; } else { LOG(ERROR) << "Cannot send a study of " << (body->GetProcessedSize() / (1024 * 1024)) << "MB with STOW-RS (chunked transfer is disabled), check out the logs of the remote modality"; } } throw; } { boost::mutex::scoped_lock lock(that_.mutex_); size_t endPosition = that_.position_; CheckStowAnswer(answerBody, serverName, endPosition - startPosition); if (that_.action_ == Action_Cancel) { that_.position_ = 0; } } } }; virtual void CancelFunction() ORTHANC_OVERRIDE { boost::mutex::scoped_lock lock(mutex_); action_ = Action_Cancel; } virtual void PauseFunction() ORTHANC_OVERRIDE { boost::mutex::scoped_lock lock(mutex_); action_ = Action_Pause; } virtual IFunction* CreateFunction() ORTHANC_OVERRIDE { action_ = Action_None; return new F(*this); } public: StowClientJob(const std::string& serverName, const std::list<std::string>& instances, const OrthancPlugins::HttpClient::HttpHeaders& headers) : SingleFunctionJob("DicomWebStowClient"), serverName_(serverName), headers_(headers), position_(0), action_(Action_None), networkSize_(0), debug_(false) { SetFactory(*this); instances_.reserve(instances.size()); for (std::list<std::string>::const_iterator it = instances.begin(); it != instances.end(); ++it) { instances_.push_back(*it); } { OrthancPlugins::OrthancString tmp; tmp.Assign(OrthancPluginGenerateUuid(OrthancPlugins::GetGlobalContext())); if (tmp.GetContent() == NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError, "Cannot generate a UUID"); } tmp.ToString(boundary_); } boundary_ = (boundary_ + "-" + boundary_); // Make the boundary longer headers_["Accept"] = "application/dicom+json"; headers_["Expect"] = ""; headers_["Content-Type"] = "multipart/related; type=\"application/dicom\"; boundary=" + boundary_; } void SetDebug(bool debug) { debug_ = debug; } }; void StowClient(OrthancPluginRestOutput* output, const char* /*url*/, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); if (request->method != OrthancPluginHttpMethod_Post) { OrthancPluginSendMethodNotAllowed(context, output, "POST"); return; } if (request->groupsCount != 1) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); } std::string serverName(request->groups[0]); Json::Value body; OrthancPlugins::ParseJsonBody(body, request); std::list<std::string> instances; std::map<std::string, std::string> httpHeaders; ParseStowRequest(instances, httpHeaders, body); OrthancPlugins::LogInfo("Sending " + boost::lexical_cast<std::string>(instances.size()) + " instances using STOW-RS to DICOMweb server: " + serverName); std::unique_ptr<StowClientJob> job(new StowClientJob(serverName, instances, httpHeaders)); bool debug; if (OrthancPlugins::LookupBooleanValue(debug, body, "Debug")) { job->SetDebug(debug); } Json::Value answer; SubmitJob(output, job.release(), body, true /* synchronous by default, for compatibility with <= 0.6 */); } static void ParseGetFromServer(std::string& uri, std::map<std::string, std::string>& additionalHeaders, const Json::Value& resource) { static const char* URI = "Uri"; static const char* HTTP_HEADERS = "HttpHeaders"; static const char* GET_ARGUMENTS = "Arguments"; std::string tmp; if (resource.type() != Json::objectValue || !OrthancPlugins::LookupStringValue(tmp, resource, URI)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "A request to the DICOMweb client must provide a JSON object " "with the field \"Uri\" containing the URI of interest"); } std::map<std::string, std::string> getArguments; OrthancPlugins::ParseAssociativeArray(getArguments, resource, GET_ARGUMENTS); OrthancPlugins::DicomWebServers::UriEncode(uri, tmp, getArguments); OrthancPlugins::ParseAssociativeArray(additionalHeaders, resource, HTTP_HEADERS); } static void ConfigureGetFromServer(OrthancPlugins::HttpClient& client, const OrthancPluginHttpRequest* request) { if (request->method != OrthancPluginHttpMethod_Post) { throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } Json::Value body; OrthancPlugins::ParseJsonBody(body, request); std::string uri; std::map<std::string, std::string> additionalHeaders; ParseGetFromServer(uri, additionalHeaders, body); std::map<std::string, std::string> userProperties; OrthancPlugins::DicomWebServers::GetInstance().ConfigureHttpClient(client, userProperties, request->groups[0], uri); client.AddHeaders(additionalHeaders); } void GetFromServer(OrthancPluginRestOutput* output, const char* /*url*/, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); if (request->method != OrthancPluginHttpMethod_Post) { OrthancPluginSendMethodNotAllowed(context, output, "POST"); return; } OrthancPlugins::HttpClient client; ConfigureGetFromServer(client, request); std::map<std::string, std::string> answerHeaders; std::string answer; client.Execute(answerHeaders, answer); std::string contentType = "application/octet-stream"; for (std::map<std::string, std::string>::const_iterator it = answerHeaders.begin(); it != answerHeaders.end(); ++it) { std::string key = it->first; Orthanc::Toolbox::ToLowerCase(key); if (key == "content-type") { contentType = it->second; } else if (key == "transfer-encoding" || key == "content-length" || key == "connection") { // Do not forward these headers } else { OrthancPluginSetHttpHeader(context, output, it->first.c_str(), it->second.c_str()); } } OrthancPluginAnswerBuffer(context, output, answer.empty() ? NULL : answer.c_str(), answer.size(), contentType.c_str()); } void GetFromServer(Json::Value& result, const OrthancPluginHttpRequest* request) { OrthancPlugins::HttpClient client; ConfigureGetFromServer(client, request); std::map<std::string, std::string> answerHeaders; client.Execute(answerHeaders, result); } class WadoRetrieveAnswer : public OrthancPlugins::HttpClient::IAnswer, private Orthanc::MultipartStreamReader::IHandler { private: enum State { State_Headers, State_Body, State_Canceled }; bool debug_; boost::mutex mutex_; State state_; std::list<std::string> instances_; std::unique_ptr<Orthanc::MultipartStreamReader> reader_; uint64_t networkSize_; virtual void HandlePart(const Orthanc::MultipartStreamReader::HttpHeaders& headers, const void* part, size_t size) ORTHANC_OVERRIDE { std::string contentType; if (!Orthanc::MultipartStreamReader::GetMainContentType(contentType, headers)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, "Missing Content-Type for a part of WADO-RS answer"); } size_t pos = contentType.find(';'); if (pos != std::string::npos) { contentType = contentType.substr(0, pos); } contentType = Orthanc::Toolbox::StripSpaces(contentType); if (!boost::iequals(contentType, "application/dicom")) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "Parts of a WADO-RS retrieve should have \"application/dicom\" type, but received: " + contentType); } OrthancPlugins::MemoryBuffer tmp; tmp.RestApiPost("/instances", part, size, false); Json::Value result; tmp.ToJson(result); std::string id; if (OrthancPlugins::LookupStringValue(id, result, "ID")) { instances_.push_back(id); } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } if (debug_) { boost::this_thread::sleep(boost::posix_time::milliseconds(50)); } } public: WadoRetrieveAnswer() : debug_(false), state_(State_Headers), networkSize_(0) { } virtual ~WadoRetrieveAnswer() { } void SetDebug(bool debug) { debug_ = debug; } void Close() { boost::mutex::scoped_lock lock(mutex_); if (state_ != State_Canceled && reader_.get() != NULL) { reader_->CloseStream(); } } virtual void AddHeader(const std::string& key, const std::string& value) ORTHANC_OVERRIDE { boost::mutex::scoped_lock lock(mutex_); if (state_ == State_Canceled) { return; } else if (state_ != State_Headers) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } if (boost::iequals(key, "Content-Type")) { if (reader_.get() != NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, "Received twice a Content-Type header in WADO-RS"); } std::string contentType, subType, boundary; if (!Orthanc::MultipartStreamReader::ParseMultipartContentType (contentType, subType, boundary, value)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, "Cannot parse the Content-Type for WADO-RS: " + value); } if (!boost::iequals(contentType, MULTIPART_RELATED)) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The remote WADO-RS server answers with a \"" + contentType + "\" Content-Type, but \"" + MULTIPART_RELATED + "\" is expected"); } reader_.reset(new Orthanc::MultipartStreamReader(boundary)); reader_->SetHandler(*this); if (debug_) { reader_->SetBlockSize(1024 * 64); } } } virtual void AddChunk(const void* data, size_t size) ORTHANC_OVERRIDE { boost::mutex::scoped_lock lock(mutex_); if (state_ == State_Canceled) { throw Orthanc::OrthancException(Orthanc::ErrorCode_CanceledJob); } else if (reader_.get() == NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, "No Content-Type provided by the remote WADO-RS server, " "your remote DICOMweb server might need client option \"" + HAS_WADO_RS_UNIVERSAL_TRANSFER_SYNTAX + "\" set to \"false\""); } else { state_ = State_Body; networkSize_ += size; reader_->AddChunk(data, size); } } void GetReceivedInstances(std::list<std::string>& target) { boost::mutex::scoped_lock lock(mutex_); target = instances_; } void Cancel() { boost::mutex::scoped_lock lock(mutex_); LOG(ERROR) << "A WADO-RS retrieve job has been canceled, expect \"Error in the network protocol\" errors"; state_ = State_Canceled; } uint64_t GetNetworkSize() { boost::mutex::scoped_lock lock(mutex_); return networkSize_; } }; class WadoRetrieveJob : public SingleFunctionJob, private SingleFunctionJob::IFunctionFactory { private: class Resource : public boost::noncopyable { private: std::string uri_; std::map<std::string, std::string> additionalHeaders_; public: explicit Resource(const std::string& uri) : uri_(uri) { } Resource(const std::string& uri, const std::map<std::string, std::string>& additionalHeaders) : uri_(uri), additionalHeaders_(additionalHeaders) { } const std::string& GetUri() const { return uri_; } const std::map<std::string, std::string>& GetAdditionalHeaders() const { return additionalHeaders_; } }; class F : public IFunction { private: WadoRetrieveJob& that_; public: explicit F(WadoRetrieveJob& that) : that_(that) { } virtual void Execute(JobContext& context) { for (;;) { OrthancPlugins::HttpClient client; if (that_.SetupNextResource(client, context)) { client.Execute(*that_.answer_); that_.CloseResource(context); } else { return; // We're done } } } }; boost::mutex mutex_; std::string serverName_; size_t position_; std::vector<Resource*> resources_; bool stopped_; std::list<std::string> retrievedInstances_; std::unique_ptr<WadoRetrieveAnswer> answer_; uint64_t networkSize_; bool debug_; bool SetupNextResource(OrthancPlugins::HttpClient& client, JobContext& context) { boost::mutex::scoped_lock lock(mutex_); if (stopped_ || position_ == resources_.size()) { return false; } else { context.SetProgress(position_, resources_.size()); answer_.reset(new WadoRetrieveAnswer); answer_->SetDebug(debug_); const Resource* resource = resources_[position_++]; if (resource == NULL) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } const std::map<std::string, std::string>& headers = resource->GetAdditionalHeaders(); std::map<std::string, std::string> userProperties; OrthancPlugins::DicomWebServers::GetInstance().ConfigureHttpClient (client, userProperties, serverName_, resource->GetUri()); client.AddHeaders(headers); /** * From documentation of Google Healthcare API: "The response's * default transfer syntax is Little Endian Explicit. As a * result, if the file was uploaded using a compressed transfer * syntax, the returned object will be decompressed. This can * negatively impact performance and lead to errors for transfer * syntaxes that the Cloud Healthcare API doesn't support. To * avoid these issues, and if the returned object's transfer * syntax does not matter to your application, use the [...] * Accept Header." * https://cloud.google.com/healthcare/docs/dicom * https://groups.google.com/d/msg/orthanc-users/w1Ekrsc6-U8/T2a_DoQ5CwAJ * * WARNING - This breaks compatibility with Orthanc servers * equiped with DICOMweb <= 1.0, as can be seen in integration * test "Orthanc.test_server_retrieve". The configuration option * "HasWadoRsUniversalTransferSyntax" enables compatibility with * DICOMweb <= 1.0. **/ if (headers.find("Accept") == headers.end()) { bool hasUniversal; // The "Accept" field was not provided in the "HttpHeaders" // field of the POST body of: "/dicom-web/servers/.../retrieve" std::map<std::string, std::string>::const_iterator found = userProperties.find(HAS_WADO_RS_UNIVERSAL_TRANSFER_SYNTAX); if (found == userProperties.end()) { hasUniversal = true; // By default, assume "true" } else if (found->second == "true" || found->second == "1") { hasUniversal = true; } else if (found->second == "false" || found->second == "0") { hasUniversal = false; } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, "Configuration option \"" + HAS_WADO_RS_UNIVERSAL_TRANSFER_SYNTAX + "\" of remote DICOMweb server \"" + serverName_ + "\" must be a Boolean, found: " + found->second); } if (hasUniversal) { client.AddHeader("Accept", "multipart/related; type=\"application/dicom\"; transfer-syntax=*"); } } return true; } } void CloseResource(JobContext& context) { boost::mutex::scoped_lock lock(mutex_); answer_->Close(); std::list<std::string> instances; answer_->GetReceivedInstances(instances); networkSize_ += answer_->GetNetworkSize(); answer_.reset(); retrievedInstances_.splice(retrievedInstances_.end(), instances); context.SetProgress(position_, resources_.size()); context.SetContent("NetworkUsageMB", boost::lexical_cast<std::string> (networkSize_ / static_cast<uint64_t>(1024 * 1024))); context.SetContent("ReceivedInstancesCount", boost::lexical_cast<std::string>(retrievedInstances_.size())); } virtual void CancelFunction() ORTHANC_OVERRIDE { boost::mutex::scoped_lock lock(mutex_); stopped_ = true; if (answer_.get() != NULL) { answer_->Cancel(); } } virtual void PauseFunction() ORTHANC_OVERRIDE { // This type of job cannot be paused CancelFunction(); } virtual IFunction* CreateFunction() ORTHANC_OVERRIDE { // This type of job cannot be paused: If restarting, always go // back to the beginning stopped_ = false; position_ = 0; retrievedInstances_.clear(); return new F(*this); } public: explicit WadoRetrieveJob(const std::string& serverName) : SingleFunctionJob("DicomWebWadoRetrieveClient"), serverName_(serverName), position_(0), stopped_(false), networkSize_(0), debug_(false) { SetFactory(*this); } virtual ~WadoRetrieveJob() { SingleFunctionJob::Finalize(); for (size_t i = 0; i < resources_.size(); i++) { assert(resources_[i] != NULL); delete resources_[i]; } } void SetDebug(bool debug) { debug_ = debug; } /*void AddResource(const std::string& uri) { resources_.push_back(new Resource(uri)); }*/ void AddResource(const std::string& uri, const std::map<std::string, std::string>& additionalHeaders) { resources_.push_back(new Resource(uri, additionalHeaders)); } void AddResourceFromRequest(const Json::Value& resource) { std::string uri; std::map<std::string, std::string> additionalHeaders; ParseGetFromServer(uri, additionalHeaders, resource); resources_.push_back(new Resource(uri, additionalHeaders)); } }; void WadoRetrieveClient(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { if (request->method != OrthancPluginHttpMethod_Post) { throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } if (request->groupsCount != 1) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); } std::string serverName(request->groups[0]); Json::Value body; OrthancPlugins::ParseJsonBody(body, request); std::unique_ptr<WadoRetrieveJob> job(new WadoRetrieveJob(serverName)); job->AddResourceFromRequest(body); bool debug; if (OrthancPlugins::LookupBooleanValue(debug, body, "Debug")) { job->SetDebug(debug); } SubmitJob(output, job.release(), body, false /* asynchronous by default */); } void RetrieveFromServer(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { static const char* const GET_ARGUMENTS = "GetArguments"; static const char* const HTTP_HEADERS = "HttpHeaders"; static const char* const RESOURCES = "Resources"; static const char* const STUDY = "Study"; static const char* const SERIES = "Series"; static const char* const INSTANCE = "Instance"; if (request->method != OrthancPluginHttpMethod_Post) { throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } if (request->groupsCount != 1) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); } std::string serverName(request->groups[0]); Json::Value body; OrthancPlugins::ParseJsonBody(body, request); std::map<std::string, std::string> getArguments; OrthancPlugins::ParseAssociativeArray(getArguments, body, GET_ARGUMENTS); std::map<std::string, std::string> additionalHeaders; OrthancPlugins::ParseAssociativeArray(additionalHeaders, body, HTTP_HEADERS); std::unique_ptr<WadoRetrieveJob> job(new WadoRetrieveJob(serverName)); if (body.type() != Json::objectValue || !body.isMember(RESOURCES) || body[RESOURCES].type() != Json::arrayValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "The body must be a JSON object containing an array \"" + std::string(RESOURCES) + "\""); } const Json::Value& resources = body[RESOURCES]; for (Json::Value::ArrayIndex i = 0; i < resources.size(); i++) { std::string study; if (!OrthancPlugins::LookupStringValue(study, resources[i], STUDY)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Missing \"Study\" field in the body"); } std::string series; if (!OrthancPlugins::LookupStringValue(series, resources[i], SERIES)) { series.clear(); } std::string instance; if (!OrthancPlugins::LookupStringValue(instance, resources[i], INSTANCE)) { instance.clear(); } if (series.empty() && !instance.empty()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Missing \"Series\" field in the body, as \"Instance\" is present"); } std::string tmp = "/studies/" + study; if (!series.empty()) { tmp += "/series/" + series; } if (!instance.empty()) { tmp += "/instances/" + instance; } std::string uri; OrthancPlugins::DicomWebServers::UriEncode(uri, tmp, getArguments); job->AddResource(uri, additionalHeaders); } bool debug; if (OrthancPlugins::LookupBooleanValue(debug, body, "Debug")) { job->SetDebug(debug); } SubmitJob(output, job.release(), body, true /* synchronous by default, for compatibility with <= 0.6 */); }