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Usage.txt
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 24 Jun 2016 13:50:26 +0200 |
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children | 4ff789abc494 |
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============= Configuration ============= (1) You must change the Orthanc configuration file to tell Orthanc where it can find the DICOMweb plugin. This is done by properly modifying the "Plugins" configuration option of Orthanc. For instance, in Linux: { ... "Plugins" : [ "/home/user/OrthancDicomWeb/Build/libOrthancDicomWeb.so" ] ... } Or in Windows: { ... "Plugins" : [ "c:/Temp/OrthancDicomWeb.dll" ] ... } Note that the DICOMweb server will share all the parameters of the Orthanc HTTP server, notably wrt. authentication and HTTPS encryption. For this reason, you will most probably have to enable the remote access to the Orthanc HTTP server: { ... "RemoteAccessEnabled" : true ... } (2) There are several configuration options that can be set to fine-tune the Orthanc DICOMweb server. Here is the full list of the available options, all of them must be grouped inside the "DicomWeb" section of the Orthanc configuration file: { ... "DicomWeb" : { "Enable" : true, // Whether DICOMweb support is enabled "Root" : "/dicom-web/", // Root URI of the DICOMweb API (for QIDO-RS, STOW-RS and WADO-RS) "EnableWado" : true, // Whether WADO-URI (previously known as WADO) support is enabled "WadoRoot" : "/wado", // Root URI of the WADO-URI (aka. WADO) API "Host" : "localhost", // Hard-codes the name of the host for subsequent WADO-RS requests "Ssl" : false, // Whether HTTPS should be used for subsequent WADO-RS requests "StowMaxInstances" : 10, // For STOW-RS client, the maximum number of instances in one single HTTP query (0 = no limit) "StowMaxSize" : 10 // For STOW-RS client, the maximum size of the body in one single HTTP query (in MB, 0 = no limit) } ... } (3) If you want to connect Orthanc as a client to remote DICOMweb servers (cf. below), you need to modify the configuration file so as to define each of them in the option "DicomWeb.Servers". The syntax is identical to the "OrthancPeers" parameters. In the most simple case, here is how to instruct Orthanc about the existence of a password-less DICOMweb server: { ... "DicomWeb" : { "Servers" : [ "http://192.168.1.1/dicom-web/" ] } ... } If the DICOMweb server is protected by a password (with HTTP Basic access authentication): { ... "DicomWeb" : { "Servers" : [ "http://192.168.1.1/dicom-web/", "username", "password" ] } ... } If the DICOMweb server is protected with HTTPS client authentication, you must provide your client certificate (in the PEM format), your client private key (in the PEM format), together with the password protecting the private key: { ... "DicomWeb" : { "Servers" : [ { "Url" : "http://192.168.1.1/dicom-web/", "CertificateFile" : "client.crt", "CertificateKeyFile" : "client.key", "CertificateKeyPassword" : "password" } ] } ... } Finally, it is also possible to use client authentication with hardware security modules and smart cards through PKCS#11: { ... "DicomWeb" : { "Servers" : [ { "Url" : "http://192.168.1.1/dicom-web/", "Pkcs11" : true } ] } ... } Important remark: When querying a DICOMweb server, Orthanc will automatically use the global configuration options "HttpProxy", "HttpTimeout", "HttpsVerifyPeers", "HttpsCACertificates", and "Pkcs11". Make sure to adapt them if need be. ================================= Querying a remote DICOMweb server ================================= Listing the available servers ----------------------------- The list of the remote DICOMweb servers that are known to the DICOMweb plugin can be obtained as follows: # curl http://localhost:8042/dicom-web/servers/ [ "sample" ] Here, a single server called "sample" is configured. Making a call to QIDO-RS or WADO-RS ----------------------------------- In Orthanc, the URI "/{dicom-web}/servers/{name}/get" allows to make a HTTP GET call against a DICOMweb server. This can be used to issue a QIDO-RS or WADO-RS command. Orthanc will take care of properly encoding the URL and authenticating the client. For instance, here is a sample QIDO-RS search to query all the studies (using a bash command-line): # curl http://localhost:8042/dicom-web/servers/sample/get -d @- << EOF { "Uri" : "/studies" } EOF You do not have to specify the base URL of the remote DICOMweb server, as it is encoded in the configuration file. The result of the command above is a multipart "application/dicom+xml" document. It is possible to request a more human-friendly JSON answer by adding the "Accept" HTTP header. Here is how to search for a given patient name, while requesting a JSON answer and pretty-printing through the "json_pp" command-line tool: # curl http://localhost:8042/dicom-web/servers/sample/get -d @- << EOF | json_pp { "Uri" : "/studies", "HttpHeaders" : { "Accept" : "application/json" }, "Arguments" : { "00100010" : "*JODOGNE*" } } EOF Note how all the GET arguments must be specified in the "Arguments" field. Orthanc will take care of properly encoding it to a URL. An user-friendly reference of the features available in QIDO-RS and WADO-RS can be found at http://dicomweb.hcintegrations.ca/#/home Sending DICOM resources to a STOW-RS server ------------------------------------------- STOW-RS allows to send local DICOM resources to a remote DICOMweb server. In Orthanc, the STOW-RS client primitive is available at URI "/{dicom-web}/servers/{name}/stow". Here is a sample call: # curl http://localhost:8042/dicom-web/servers/sample/stow -X POST -d @- << EOF { "Resources" : [ "6ca4c9f3-5e895cb3-4d82c6da-09e060fe-9c59f228" ] } EOF Note that this primitive takes as its input a list of Orthanc identifiers corresponding to the resources (patients, studies, series and/or instances) to be exported: https://orthanc.chu.ulg.ac.be/book/faq/orthanc-ids.html Remark 1: Additional HTTP headers can be added with an optional "HttpHeaders" argument, as for QIDO-RS and WADO-RS. This might be useful e.g. for cookie-based session management. Remark 2: One call to this "/stow" primitive will possibly result in several HTTP requests to the DICOMweb server, in order to limit the size of the HTTP messages. The configuration options "DicomWeb.StowMaxInstances" and "DicomWeb.StowMaxSize" can be used to tune this behavior (set both options to 0 to send one single request). Retrieving DICOM resources from a WADO-RS server ------------------------------------------------ Once DICOM resources of interest have been identified through a QIDO-RS call to a remote DICOMweb server (cf. above), it is interesting to download them locally with a WADO-RS call. You could do it manually with a second call to the "/{dicom-web}/servers/{name}/get" URI, but Orthanc provides another primitive "/retrieve" to automate this process. Here is how you would download one study, one series and one instance whose StudyInstanceUID (0020,000d), SeriesInstanceUID (0020,000e) are SOPInstanceUID (0008,0018) have been identified through a former QIDO-RS call: # curl http://localhost:8042/dicom-web/servers/sample/retrieve -X POST -d @- << EOF { "Resources" : [ { "Study" : "1.3.51.0.1.1.192.168.29.133.1688840.1688819" }, { "Study" : "1.3.51.0.1.1.192.168.29.133.1681753.1681732", "Series" : "1.3.12.2.1107.5.2.33.37097.2012041613040617636372171.0.0.0" }, { "Study" : "1.3.51.0.1.1.192.168.29.133.1681753.1681732", "Series" : "1.3.12.2.1107.5.2.33.37097.2012041612474981424569674.0.0.0", "Instance" : "1.3.12.2.1107.5.2.33.37097.2012041612485540185869716" } ] } EOF Orthanc will reply with the list of the Orthanc identifiers of all the DICOM instances that were downloaded from the remote server. Remark 1: Contrarily to the "/stow" URI that uses Orthanc identifiers, the "/retrieve" URI uses DICOM identifiers. Remark 2: The "HttpArguments" is also available. ======= Samples ======= Samples of how to call DICOMweb services from standalone applications can be found in the following folders: - In Python: see ./Resources/Samples/Python/ - In JavaScript: see ./Resources/Samples/Python/