Mercurial > hg > orthanc-dicomweb
view Plugin/StowRs.cpp @ 391:27001924c456
Fix issue #162 ("DICOMweb metadata resource reads all instances")
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 17 Feb 2020 16:33:32 +0100 |
parents | 9bf97ec22e22 |
children | 051ba7683c00 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2020 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "StowRs.h" #include "Configuration.h" #include "DicomWebFormatter.h" namespace OrthancPlugins { StowServer::StowServer(OrthancPluginContext* context, const std::map<std::string, std::string>& headers, const std::string& expectedStudy) : context_(context), xml_(Configuration::IsXmlExpected(headers)), wadoBase_(Configuration::GetBaseUrl(headers)), expectedStudy_(expectedStudy), isFirst_(true), result_(Json::objectValue), success_(Json::arrayValue), failed_(Json::arrayValue) { std::string tmp, contentType, subType, boundary; if (!Orthanc::MultipartStreamReader::GetMainContentType(tmp, headers) || !Orthanc::MultipartStreamReader::ParseMultipartContentType(contentType, subType, boundary, tmp)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnsupportedMediaType, "The STOW-RS server expects a multipart body in its request"); } if (contentType != "multipart/related") { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnsupportedMediaType, "The Content-Type of a STOW-RS request must be \"multipart/related\""); } if (subType != "application/dicom") { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnsupportedMediaType, "The STOW-RS plugin currently only supports \"application/dicom\" subtype"); } parser_.reset(new Orthanc::MultipartStreamReader(boundary)); parser_->SetHandler(*this); } void StowServer::HandlePart(const Orthanc::MultipartStreamReader::HttpHeaders& headers, const void* part, size_t size) { std::string contentType; if (!Orthanc::MultipartStreamReader::GetMainContentType(contentType, headers) || contentType != "application/dicom") { throw Orthanc::OrthancException( Orthanc::ErrorCode_UnsupportedMediaType, "The STOW-RS request contains a part that is not " "\"application/dicom\" (it is: \"" + contentType + "\")"); } Json::Value dicom; bool ok = false; try { OrthancString s; s.Assign(OrthancPluginDicomBufferToJson(context_, part, size, OrthancPluginDicomToJsonFormat_Short, OrthancPluginDicomToJsonFlags_None, 256)); if (s.GetContent() != NULL) { ok = true; s.ToJson(dicom); } } catch (Orthanc::OrthancException&) { } if (!ok) { // Bad DICOM file => TODO add to error LogWarning("STOW-RS cannot parse an incoming DICOM file"); return; } if (dicom.type() != Json::objectValue || !dicom.isMember(Orthanc::DICOM_TAG_SERIES_INSTANCE_UID.Format()) || !dicom.isMember(Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()) || !dicom.isMember(Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()) || !dicom.isMember(Orthanc::DICOM_TAG_STUDY_INSTANCE_UID.Format()) || dicom[Orthanc::DICOM_TAG_SERIES_INSTANCE_UID.Format()].type() != Json::stringValue || dicom[Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()].type() != Json::stringValue || dicom[Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()].type() != Json::stringValue || dicom[Orthanc::DICOM_TAG_STUDY_INSTANCE_UID.Format()].type() != Json::stringValue) { LogWarning("STOW-RS: Missing a mandatory tag in incoming DICOM file"); return; } const std::string seriesInstanceUid = dicom[Orthanc::DICOM_TAG_SERIES_INSTANCE_UID.Format()].asString(); const std::string sopClassUid = dicom[Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()].asString(); const std::string sopInstanceUid = dicom[Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()].asString(); const std::string studyInstanceUid = dicom[Orthanc::DICOM_TAG_STUDY_INSTANCE_UID.Format()].asString(); Json::Value item = Json::objectValue; item[DICOM_TAG_REFERENCED_SOP_CLASS_UID.Format()] = sopClassUid; item[DICOM_TAG_REFERENCED_SOP_INSTANCE_UID.Format()] = sopInstanceUid; if (!expectedStudy_.empty() && studyInstanceUid != expectedStudy_) { LogInfo("STOW-RS request restricted to study [" + expectedStudy_ + "]: Ignoring instance from study [" + studyInstanceUid + "]"); /*item[DICOM_TAG_WARNING_REASON.Format()] = boost::lexical_cast<std::string>(0xB006); // Elements discarded success.append(item);*/ } else { if (isFirst_) { std::string url = wadoBase_ + "studies/" + studyInstanceUid; result_[DICOM_TAG_RETRIEVE_URL.Format()] = url; isFirst_ = false; } MemoryBuffer tmp; bool ok = tmp.RestApiPost("/instances", part, size, false); tmp.Clear(); if (ok) { std::string url = (wadoBase_ + "studies/" + studyInstanceUid + "/series/" + seriesInstanceUid + "/instances/" + sopInstanceUid); item[DICOM_TAG_RETRIEVE_URL.Format()] = url; success_.append(item); } else { LogError("Orthanc was unable to store one instance in a STOW-RS request"); item[DICOM_TAG_FAILURE_REASON.Format()] = boost::lexical_cast<std::string>(0x0110); // Processing failure failed_.append(item); } } } void StowServer::AddChunk(const void* data, size_t size) { assert(parser_.get() != NULL); parser_->AddChunk(data, size); } void StowServer::Execute(OrthancPluginRestOutput* output) { assert(parser_.get() != NULL); parser_->CloseStream(); result_[DICOM_TAG_FAILED_SOP_SEQUENCE.Format()] = failed_; result_[DICOM_TAG_REFERENCED_SOP_SEQUENCE.Format()] = success_; std::string answer; { DicomWebFormatter::Locker locker(OrthancPluginDicomWebBinaryMode_Ignore, ""); locker.Apply(answer, context_, result_, xml_); } OrthancPluginAnswerBuffer(context_, output, answer.c_str(), answer.size(), xml_ ? "application/dicom+xml" : "application/dicom+json"); }; IChunkedRequestReader* StowServer::PostCallback(const char* url, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = GetGlobalContext(); if (request->method != OrthancPluginHttpMethod_Post) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } std::map<std::string, std::string> headers; for (uint32_t i = 0; i < request->headersCount; i++) { headers[request->headersKeys[i]] = request->headersValues[i]; } std::string expectedStudy; if (request->groupsCount == 1) { expectedStudy = request->groups[0]; } if (expectedStudy.empty()) { LogInfo("STOW-RS request without study"); } else { LogInfo("STOW-RS request restricted to study UID " + expectedStudy); } return new StowServer(context, headers, expectedStudy); } }