Mercurial > hg > orthanc-dicomweb
view Plugin/StowRs.cpp @ 253:172ddccbbc1a
Fix issue #4 (QIDO-RS: wrong serialization of number values)
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 26 Feb 2019 17:33:07 +0100 |
parents | d73e463dd5bc |
children | c6881fa1935c |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2019 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "StowRs.h" #include "Plugin.h" #include "Configuration.h" #include "Dicom.h" #include <Core/Toolbox.h> #include <stdexcept> static void SetTag(gdcm::DataSet& dataset, const gdcm::Tag& tag, const gdcm::VR& vr, const std::string& value) { gdcm::DataElement element(tag); element.SetVR(vr); element.SetByteValue(value.c_str(), value.size()); dataset.Insert(element); } static void SetSequenceTag(gdcm::DataSet& dataset, const gdcm::Tag& tag, gdcm::SmartPointer<gdcm::SequenceOfItems>& sequence) { gdcm::DataElement element; element.SetTag(tag); element.SetVR(gdcm::VR::SQ); element.SetValue(*sequence); element.SetVLToUndefined(); dataset.Insert(element); } bool IsXmlExpected(const OrthancPluginHttpRequest* request) { std::string accept; if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) { return false; // By default, return DICOM+JSON } Orthanc::Toolbox::ToLowerCase(accept); if (accept == "application/dicom+json" || accept == "application/json" || accept == "*/*") { return false; } else if (accept == "application/dicom+xml" || accept == "application/xml" || accept == "text/xml") { return true; } else { OrthancPlugins::LogError("Unsupported return MIME type: " + accept + ", will return DICOM+JSON"); return false; } } void StowCallback(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); const std::string wadoBase = OrthancPlugins::Configuration::GetBaseUrl(request); if (request->method != OrthancPluginHttpMethod_Post) { OrthancPluginSendMethodNotAllowed(context, output, "POST"); return; } std::string expectedStudy; if (request->groupsCount == 1) { expectedStudy = request->groups[0]; } if (expectedStudy.empty()) { OrthancPlugins::LogInfo("STOW-RS request without study"); } else { OrthancPlugins::LogInfo("STOW-RS request restricted to study UID " + expectedStudy); } bool isXml = IsXmlExpected(request); std::string header; if (!OrthancPlugins::LookupHttpHeader(header, request, "content-type")) { OrthancPlugins::LogError("No content type in the HTTP header of a STOW-RS request"); OrthancPluginSendHttpStatusCode(context, output, 400 /* Bad request */); return; } std::string application; std::map<std::string, std::string> attributes; OrthancPlugins::ParseContentType(application, attributes, header); if (application != "multipart/related" || attributes.find("type") == attributes.end() || attributes.find("boundary") == attributes.end()) { OrthancPlugins::LogError("Unable to parse the content type of a STOW-RS request (" + application + ")"); OrthancPluginSendHttpStatusCode(context, output, 400 /* Bad request */); return; } std::string boundary = attributes["boundary"]; if (attributes["type"] != "application/dicom") { OrthancPlugins::LogError("The STOW-RS plugin currently only supports application/dicom"); OrthancPluginSendHttpStatusCode(context, output, 415 /* Unsupported media type */); return; } bool isFirst = true; gdcm::DataSet result; gdcm::SmartPointer<gdcm::SequenceOfItems> success = new gdcm::SequenceOfItems(); gdcm::SmartPointer<gdcm::SequenceOfItems> failed = new gdcm::SequenceOfItems(); std::vector<OrthancPlugins::MultipartItem> items; OrthancPlugins::ParseMultipartBody(items, request->body, request->bodySize, boundary); for (size_t i = 0; i < items.size(); i++) { OrthancPlugins::LogInfo("Detected multipart item with content type \"" + items[i].contentType_ + "\" of size " + boost::lexical_cast<std::string>(items[i].size_)); } for (size_t i = 0; i < items.size(); i++) { if (!items[i].contentType_.empty() && items[i].contentType_ != "application/dicom") { OrthancPlugins::LogError("The STOW-RS request contains a part that is not " "\"application/dicom\" (it is: \"" + items[i].contentType_ + "\")"); OrthancPluginSendHttpStatusCode(context, output, 415 /* Unsupported media type */); return; } OrthancPlugins::ParsedDicomFile dicom(items[i]); std::string studyInstanceUid = dicom.GetRawTagWithDefault(OrthancPlugins::DICOM_TAG_STUDY_INSTANCE_UID, "", true); std::string sopClassUid = dicom.GetRawTagWithDefault(OrthancPlugins::DICOM_TAG_SOP_CLASS_UID, "", true); std::string sopInstanceUid = dicom.GetRawTagWithDefault(OrthancPlugins::DICOM_TAG_SOP_INSTANCE_UID, "", true); gdcm::Item item; item.SetVLToUndefined(); gdcm::DataSet &status = item.GetNestedDataSet(); SetTag(status, OrthancPlugins::DICOM_TAG_REFERENCED_SOP_CLASS_UID, gdcm::VR::UI, sopClassUid); SetTag(status, OrthancPlugins::DICOM_TAG_REFERENCED_SOP_INSTANCE_UID, gdcm::VR::UI, sopInstanceUid); if (!expectedStudy.empty() && studyInstanceUid != expectedStudy) { OrthancPlugins::LogInfo("STOW-RS request restricted to study [" + expectedStudy + "]: Ignoring instance from study [" + studyInstanceUid + "]"); SetTag(status, OrthancPlugins::DICOM_TAG_WARNING_REASON, gdcm::VR::US, "B006"); // Elements discarded success->AddItem(item); } else { if (isFirst) { std::string url = wadoBase + "studies/" + studyInstanceUid; SetTag(result, OrthancPlugins::DICOM_TAG_RETRIEVE_URL, gdcm::VR::UT, url); isFirst = false; } OrthancPlugins::MemoryBuffer tmp; bool ok = tmp.RestApiPost("/instances", items[i].data_, items[i].size_, false); tmp.Clear(); if (ok) { std::string url = (wadoBase + "studies/" + studyInstanceUid + "/series/" + dicom.GetRawTagWithDefault(OrthancPlugins::DICOM_TAG_SERIES_INSTANCE_UID, "", true) + "/instances/" + sopInstanceUid); SetTag(status, OrthancPlugins::DICOM_TAG_RETRIEVE_URL, gdcm::VR::UT, url); success->AddItem(item); } else { OrthancPlugins::LogError("Orthanc was unable to store instance through STOW-RS request"); SetTag(status, OrthancPlugins::DICOM_TAG_FAILURE_REASON, gdcm::VR::US, "0110"); // Processing failure failed->AddItem(item); } } } SetSequenceTag(result, OrthancPlugins::DICOM_TAG_FAILED_SOP_SEQUENCE, failed); SetSequenceTag(result, OrthancPlugins::DICOM_TAG_REFERENCED_SOP_SEQUENCE, success); OrthancPlugins::AnswerDicom(output, wadoBase, *dictionary_, result, isXml, false); }