Mercurial > hg > orthanc-dicomweb
view Plugin/DicomWebClient.cpp @ 253:172ddccbbc1a
Fix issue #4 (QIDO-RS: wrong serialization of number values)
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 26 Feb 2019 17:33:07 +0100 |
parents | d73e463dd5bc |
children | c6881fa1935c |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2019 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "DicomWebClient.h" #include "Plugin.h" #include "DicomWebServers.h" #include <json/reader.h> #include <list> #include <set> #include <boost/lexical_cast.hpp> #include <Core/ChunkedBuffer.h> #include <Core/Toolbox.h> static void AddInstance(std::list<std::string>& target, const Json::Value& instance) { if (instance.type() != Json::objectValue || !instance.isMember("ID") || instance["ID"].type() != Json::stringValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } else { target.push_back(instance["ID"].asString()); } } static bool GetSequenceSize(size_t& result, const Json::Value& answer, const std::string& tag, bool isMandatory, const std::string& server) { const Json::Value* value = NULL; std::string upper, lower; Orthanc::Toolbox::ToUpperCase(upper, tag); Orthanc::Toolbox::ToLowerCase(lower, tag); if (answer.isMember(upper)) { value = &answer[upper]; } else if (answer.isMember(lower)) { value = &answer[lower]; } else if (isMandatory) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The STOW-RS JSON response from DICOMweb server " + server + " does not contain the mandatory tag " + upper); } else { return false; } if (value->type() != Json::objectValue || !value->isMember("Value") || (*value) ["Value"].type() != Json::arrayValue) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "Unable to parse STOW-RS JSON response from DICOMweb server " + server); } result = (*value) ["Value"].size(); return true; } static void ParseStowRequest(std::list<std::string>& instances /* out */, std::map<std::string, std::string>& httpHeaders /* out */, std::map<std::string, std::string>& queryArguments /* out */, const OrthancPluginHttpRequest* request /* in */) { static const char* RESOURCES = "Resources"; static const char* HTTP_HEADERS = "HttpHeaders"; static const char* QUERY_ARGUMENTS = "Arguments"; Json::Value body; Json::Reader reader; if (!reader.parse(request->body, request->body + request->bodySize, body) || body.type() != Json::objectValue || !body.isMember(RESOURCES) || body[RESOURCES].type() != Json::arrayValue) { throw Orthanc::OrthancException( Orthanc::ErrorCode_BadFileFormat, "A request to the DICOMweb STOW-RS client must provide a JSON object " "with the field \"" + std::string(RESOURCES) + "\" containing an array of resources to be sent"); } OrthancPlugins::ParseAssociativeArray(queryArguments, body, QUERY_ARGUMENTS); OrthancPlugins::ParseAssociativeArray(httpHeaders, body, HTTP_HEADERS); Json::Value& resources = body[RESOURCES]; // Extract information about all the child instances for (Json::Value::ArrayIndex i = 0; i < resources.size(); i++) { if (resources[i].type() != Json::stringValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } std::string resource = resources[i].asString(); if (resource.empty()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } // Test whether this resource is an instance Json::Value tmp; if (OrthancPlugins::RestApiGet(tmp, "/instances/" + resource, false)) { AddInstance(instances, tmp); } // This was not an instance, successively try with series/studies/patients else if ((OrthancPlugins::RestApiGet(tmp, "/series/" + resource, false) && OrthancPlugins::RestApiGet(tmp, "/series/" + resource + "/instances", false)) || (OrthancPlugins::RestApiGet(tmp, "/studies/" + resource, false) && OrthancPlugins::RestApiGet(tmp, "/studies/" + resource + "/instances", false)) || (OrthancPlugins::RestApiGet(tmp, "/patients/" + resource, false) && OrthancPlugins::RestApiGet(tmp, "/patients/" + resource + "/instances", false))) { if (tmp.type() != Json::arrayValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } for (Json::Value::ArrayIndex j = 0; j < tmp.size(); j++) { AddInstance(instances, tmp[j]); } } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } } } static void SendStowChunks(const Orthanc::WebServiceParameters& server, const std::map<std::string, std::string>& httpHeaders, const std::map<std::string, std::string>& queryArguments, const std::string& boundary, Orthanc::ChunkedBuffer& chunks, size_t& countInstances, bool force) { unsigned int maxInstances = OrthancPlugins::Configuration::GetUnsignedIntegerValue("StowMaxInstances", 10); size_t maxSize = static_cast<size_t>(OrthancPlugins::Configuration::GetUnsignedIntegerValue("StowMaxSize", 10)) * 1024 * 1024; if ((force && countInstances > 0) || (maxInstances != 0 && countInstances >= maxInstances) || (maxSize != 0 && chunks.GetNumBytes() >= maxSize)) { chunks.AddChunk("\r\n--" + boundary + "--\r\n"); std::string body; chunks.Flatten(body); OrthancPlugins::MemoryBuffer answerBody; std::map<std::string, std::string> answerHeaders; std::string uri; OrthancPlugins::UriEncode(uri, "studies", queryArguments); OrthancPlugins::CallServer(answerBody, answerHeaders, server, OrthancPluginHttpMethod_Post, httpHeaders, uri, body); Json::Value response; Json::Reader reader; bool success = reader.parse(reinterpret_cast<const char*>((*answerBody)->data), reinterpret_cast<const char*>((*answerBody)->data) + (*answerBody)->size, response); answerBody.Clear(); if (!success || response.type() != Json::objectValue || !response.isMember("00081199")) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "Unable to parse STOW-RS JSON response from DICOMweb server " + server.GetUrl()); } size_t size; if (!GetSequenceSize(size, response, "00081199", true, server.GetUrl()) || size != countInstances) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The STOW-RS server was only able to receive " + boost::lexical_cast<std::string>(size) + " instances out of " + boost::lexical_cast<std::string>(countInstances)); } if (GetSequenceSize(size, response, "00081198", false, server.GetUrl()) && size != 0) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The response from the STOW-RS server contains " + boost::lexical_cast<std::string>(size) + " items in its Failed SOP Sequence (0008,1198) tag"); } if (GetSequenceSize(size, response, "0008119A", false, server.GetUrl()) && size != 0) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The response from the STOW-RS server contains " + boost::lexical_cast<std::string>(size) + " items in its Other Failures Sequence (0008,119A) tag"); } countInstances = 0; } } void StowClient(OrthancPluginRestOutput* output, const char* /*url*/, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); if (request->groupsCount != 1) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); } if (request->method != OrthancPluginHttpMethod_Post) { OrthancPluginSendMethodNotAllowed(context, output, "POST"); return; } Orthanc::WebServiceParameters server(OrthancPlugins::DicomWebServers::GetInstance().GetServer(request->groups[0])); std::string boundary; { char* uuid = OrthancPluginGenerateUuid(context); try { boundary.assign(uuid); } catch (...) { OrthancPluginFreeString(context, uuid); throw Orthanc::OrthancException(Orthanc::ErrorCode_NotEnoughMemory); } OrthancPluginFreeString(context, uuid); } std::string mime = "multipart/related; type=application/dicom; boundary=" + boundary; std::map<std::string, std::string> queryArguments; std::map<std::string, std::string> httpHeaders; httpHeaders["Accept"] = "application/dicom+json"; httpHeaders["Expect"] = ""; httpHeaders["Content-Type"] = mime; std::list<std::string> instances; ParseStowRequest(instances, httpHeaders, queryArguments, request); OrthancPlugins::LogInfo("Sending " + boost::lexical_cast<std::string>(instances.size()) + " instances using STOW-RS to DICOMweb server: " + server.GetUrl()); Orthanc::ChunkedBuffer chunks; size_t countInstances = 0; for (std::list<std::string>::const_iterator it = instances.begin(); it != instances.end(); ++it) { OrthancPlugins::MemoryBuffer dicom; if (dicom.RestApiGet("/instances/" + *it + "/file", false)) { chunks.AddChunk("\r\n--" + boundary + "\r\n" + "Content-Type: application/dicom\r\n" + "Content-Length: " + boost::lexical_cast<std::string>(dicom.GetSize()) + "\r\n\r\n"); chunks.AddChunk(dicom.GetData(), dicom.GetSize()); countInstances ++; SendStowChunks(server, httpHeaders, queryArguments, boundary, chunks, countInstances, false); } } SendStowChunks(server, httpHeaders, queryArguments, boundary, chunks, countInstances, true); std::string answer = "{}\n"; OrthancPluginAnswerBuffer(context, output, answer.c_str(), answer.size(), "application/json"); } static bool GetStringValue(std::string& target, const Json::Value& json, const std::string& key) { if (json.type() != Json::objectValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } else if (!json.isMember(key)) { target.clear(); return false; } else if (json[key].type() != Json::stringValue) { throw Orthanc::OrthancException( Orthanc::ErrorCode_BadFileFormat, "The field \"" + key + "\" in a JSON object should be a string"); } else { target = json[key].asString(); return true; } } void GetFromServer(OrthancPluginRestOutput* output, const char* /*url*/, const OrthancPluginHttpRequest* request) { static const char* URI = "Uri"; static const char* HTTP_HEADERS = "HttpHeaders"; static const char* GET_ARGUMENTS = "Arguments"; OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); if (request->method != OrthancPluginHttpMethod_Post) { OrthancPluginSendMethodNotAllowed(context, output, "POST"); return; } Orthanc::WebServiceParameters server(OrthancPlugins::DicomWebServers::GetInstance().GetServer(request->groups[0])); std::string tmp; Json::Value body; Json::Reader reader; if (!reader.parse(request->body, request->body + request->bodySize, body) || body.type() != Json::objectValue || !GetStringValue(tmp, body, URI)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "A request to the DICOMweb client must provide a JSON object " "with the field \"Uri\" containing the URI of interest"); } std::map<std::string, std::string> getArguments; OrthancPlugins::ParseAssociativeArray(getArguments, body, GET_ARGUMENTS); std::string uri; OrthancPlugins::UriEncode(uri, tmp, getArguments); std::map<std::string, std::string> httpHeaders; OrthancPlugins::ParseAssociativeArray(httpHeaders, body, HTTP_HEADERS); OrthancPlugins::MemoryBuffer answerBody; std::map<std::string, std::string> answerHeaders; OrthancPlugins::CallServer(answerBody, answerHeaders, server, OrthancPluginHttpMethod_Get, httpHeaders, uri, ""); std::string contentType = "application/octet-stream"; for (std::map<std::string, std::string>::const_iterator it = answerHeaders.begin(); it != answerHeaders.end(); ++it) { std::string key = it->first; Orthanc::Toolbox::ToLowerCase(key); if (key == "content-type") { contentType = it->second; } else if (key == "transfer-encoding") { // Do not forward this header } else { OrthancPluginSetHttpHeader(context, output, it->first.c_str(), it->second.c_str()); } } OrthancPluginAnswerBuffer(context, output, reinterpret_cast<const char*>(answerBody.GetData()), answerBody.GetSize(), contentType.c_str()); } static void RetrieveFromServerInternal(std::set<std::string>& instances, const Orthanc::WebServiceParameters& server, const std::map<std::string, std::string>& httpHeaders, const std::map<std::string, std::string>& getArguments, const Json::Value& resource) { static const std::string STUDY = "Study"; static const std::string SERIES = "Series"; static const std::string INSTANCE = "Instance"; static const std::string MULTIPART_RELATED = "multipart/related"; static const std::string APPLICATION_DICOM = "application/dicom"; if (resource.type() != Json::objectValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Resources of interest for the DICOMweb WADO-RS Retrieve client " "must be provided as a JSON object"); } std::string study, series, instance; if (!GetStringValue(study, resource, STUDY) || study.empty()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "A non-empty \"" + STUDY + "\" field is mandatory for the " "DICOMweb WADO-RS Retrieve client"); } GetStringValue(series, resource, SERIES); GetStringValue(instance, resource, INSTANCE); if (series.empty() && !instance.empty()) { throw Orthanc::OrthancException( Orthanc::ErrorCode_BadFileFormat, "When specifying a \"" + INSTANCE + "\" field in a call to DICOMweb " "WADO-RS Retrieve client, the \"" + SERIES + "\" field is mandatory"); } std::string tmpUri = "studies/" + study; if (!series.empty()) { tmpUri += "/series/" + series; if (!instance.empty()) { tmpUri += "/instances/" + instance; } } std::string uri; OrthancPlugins::UriEncode(uri, tmpUri, getArguments); OrthancPlugins::MemoryBuffer answerBody; std::map<std::string, std::string> answerHeaders; OrthancPlugins::CallServer(answerBody, answerHeaders, server, OrthancPluginHttpMethod_Get, httpHeaders, uri, ""); std::string contentTypeFull; std::vector<std::string> contentType; for (std::map<std::string, std::string>::const_iterator it = answerHeaders.begin(); it != answerHeaders.end(); ++it) { std::string s = Orthanc::Toolbox::StripSpaces(it->first); Orthanc::Toolbox::ToLowerCase(s); if (s == "content-type") { contentTypeFull = it->second; Orthanc::Toolbox::TokenizeString(contentType, it->second, ';'); break; } } OrthancPlugins::LogInfo("Got " + boost::lexical_cast<std::string>(answerBody.GetSize()) + " bytes from a WADO-RS query with content type: " + contentTypeFull); if (contentType.empty()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, "No Content-Type provided by the remote WADO-RS server"); } Orthanc::Toolbox::ToLowerCase(contentType[0]); if (Orthanc::Toolbox::StripSpaces(contentType[0]) != MULTIPART_RELATED) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The remote WADO-RS server answers with a \"" + contentType[0] + "\" Content-Type, but \"" + MULTIPART_RELATED + "\" is expected"); } std::string type, boundary; for (size_t i = 1; i < contentType.size(); i++) { std::vector<std::string> tokens; Orthanc::Toolbox::TokenizeString(tokens, contentType[i], '='); if (tokens.size() == 2) { std::string s = Orthanc::Toolbox::StripSpaces(tokens[0]); Orthanc::Toolbox::ToLowerCase(s); if (s == "type") { type = Orthanc::Toolbox::StripSpaces(tokens[1]); // This covers the case where the content-type is quoted, // which COULD be the case // cf. https://tools.ietf.org/html/rfc7231#section-3.1.1.1 size_t len = type.length(); if (len >= 2 && type[0] == '"' && type[len - 1] == '"') { type = type.substr(1, len - 2); } Orthanc::Toolbox::ToLowerCase(type); } else if (s == "boundary") { boundary = Orthanc::Toolbox::StripSpaces(tokens[1]); } } } // Strip the trailing and heading quotes if present if (boundary.length() > 2 && boundary[0] == '"' && boundary[boundary.size() - 1] == '"') { boundary = boundary.substr(1, boundary.size() - 2); } OrthancPlugins::LogInfo(" Parsing the multipart content type: " + type + " with boundary: " + boundary); if (type != APPLICATION_DICOM) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The remote WADO-RS server answers with a \"" + type + "\" multipart Content-Type, but \"" + APPLICATION_DICOM + "\" is expected"); } if (boundary.empty()) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The remote WADO-RS server does not provide a boundary for its multipart answer"); } std::vector<OrthancPlugins::MultipartItem> parts; OrthancPlugins::ParseMultipartBody(parts, reinterpret_cast<const char*>(answerBody.GetData()), answerBody.GetSize(), boundary); OrthancPlugins::LogInfo("The remote WADO-RS server has provided " + boost::lexical_cast<std::string>(parts.size()) + " DICOM instances"); for (size_t i = 0; i < parts.size(); i++) { std::vector<std::string> tokens; Orthanc::Toolbox::TokenizeString(tokens, parts[i].contentType_, ';'); std::string partType; if (tokens.size() > 0) { partType = Orthanc::Toolbox::StripSpaces(tokens[0]); } if (partType != APPLICATION_DICOM) { throw Orthanc::OrthancException( Orthanc::ErrorCode_NetworkProtocol, "The remote WADO-RS server has provided a non-DICOM file in its multipart answer" " (content type: " + parts[i].contentType_ + ")"); } OrthancPlugins::MemoryBuffer tmp; tmp.RestApiPost("/instances", parts[i].data_, parts[i].size_, false); Json::Value result; tmp.ToJson(result); if (result.type() != Json::objectValue || !result.isMember("ID") || result["ID"].type() != Json::stringValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } else { instances.insert(result["ID"].asString()); } } } void RetrieveFromServer(OrthancPluginRestOutput* output, const char* /*url*/, const OrthancPluginHttpRequest* request) { static const std::string RESOURCES("Resources"); static const char* HTTP_HEADERS = "HttpHeaders"; static const std::string GET_ARGUMENTS = "Arguments"; OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); if (request->method != OrthancPluginHttpMethod_Post) { OrthancPluginSendMethodNotAllowed(context, output, "POST"); return; } Orthanc::WebServiceParameters server(OrthancPlugins::DicomWebServers::GetInstance().GetServer(request->groups[0])); Json::Value body; Json::Reader reader; if (!reader.parse(request->body, request->body + request->bodySize, body) || body.type() != Json::objectValue || !body.isMember(RESOURCES) || body[RESOURCES].type() != Json::arrayValue) { throw Orthanc::OrthancException( Orthanc::ErrorCode_BadFileFormat, "A request to the DICOMweb WADO-RS Retrieve client must provide a JSON object " "with the field \"" + RESOURCES + "\" containing an array of resources"); } std::map<std::string, std::string> httpHeaders; OrthancPlugins::ParseAssociativeArray(httpHeaders, body, HTTP_HEADERS); std::map<std::string, std::string> getArguments; OrthancPlugins::ParseAssociativeArray(getArguments, body, GET_ARGUMENTS); std::set<std::string> instances; for (Json::Value::ArrayIndex i = 0; i < body[RESOURCES].size(); i++) { RetrieveFromServerInternal(instances, server, httpHeaders, getArguments, body[RESOURCES][i]); } Json::Value status = Json::objectValue; status["Instances"] = Json::arrayValue; for (std::set<std::string>::const_iterator it = instances.begin(); it != instances.end(); ++it) { status["Instances"].append(*it); } std::string s = status.toStyledString(); OrthancPluginAnswerBuffer(context, output, s.c_str(), s.size(), "application/json"); }