Mercurial > hg > orthanc-dicomweb
view Plugin/Plugin.cpp @ 106:100c20770a25 dev
fixes in STOW-RS
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 27 Apr 2016 13:45:08 +0200 |
parents | e1e2b6b2139d |
children | fea72403194b |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "Plugin.h" #include "QidoRs.h" #include "StowRs.h" #include "WadoRs.h" #include "WadoUri.h" #include "Configuration.h" #include <gdcmDictEntry.h> #include <gdcmDict.h> #include <gdcmDicts.h> #include <gdcmGlobal.h> #include <json/reader.h> #include <list> #include "../Orthanc/Core/ChunkedBuffer.h" #include "../Orthanc/Core/Toolbox.h" // Global state OrthancPluginContext* context_ = NULL; Json::Value configuration_; const gdcm::Dict* dictionary_ = NULL; #include "../Orthanc/Core/OrthancException.h" #include <boost/lexical_cast.hpp> typedef void (*RestCallback) (OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request); template <RestCallback Callback> OrthancPluginErrorCode Protect(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { try { Callback(output, url, request); return OrthancPluginErrorCode_Success; } catch (Orthanc::OrthancException& e) { OrthancPluginLogError(context_, e.What()); return OrthancPluginErrorCode_Plugin; } catch (boost::bad_lexical_cast& e) { OrthancPluginLogError(context_, e.what()); return OrthancPluginErrorCode_Plugin; } catch (std::runtime_error& e) { OrthancPluginLogError(context_, e.what()); return OrthancPluginErrorCode_Plugin; } } void SwitchStudies(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { switch (request->method) { case OrthancPluginHttpMethod_Get: // This is QIDO-RS SearchForStudies(output, url, request); break; case OrthancPluginHttpMethod_Post: // This is STOW-RS StowCallback(output, url, request); break; default: OrthancPluginSendMethodNotAllowed(context_, output, "GET,POST"); break; } } void SwitchStudy(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { switch (request->method) { case OrthancPluginHttpMethod_Get: // This is WADO-RS RetrieveDicomStudy(output, url, request); break; case OrthancPluginHttpMethod_Post: // This is STOW-RS StowCallback(output, url, request); break; default: OrthancPluginSendMethodNotAllowed(context_, output, "GET,POST"); break; } } static void Register(const std::string& root, const std::string& uri, OrthancPluginRestCallback callback) { assert(!uri.empty() && uri[0] != '/'); std::string s = root + uri; OrthancPluginRegisterRestCallback(context_, s.c_str(), callback); } static void AddInstance(std::list<std::string>& target, const Json::Value& instance) { if (instance.type() != Json::objectValue || !instance.isMember("ID") || instance["ID"].type() != Json::stringValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } else { target.push_back(instance["ID"].asString()); } } static bool GetSequenceSize(size_t& result, const Json::Value& answer, const std::string& tag, bool isMandatory, const std::string& peer) { const Json::Value* value = NULL; std::string upper, lower; Orthanc::Toolbox::ToUpperCase(upper, tag); Orthanc::Toolbox::ToLowerCase(lower, tag); if (answer.isMember(upper)) { value = &answer[upper]; } else if (answer.isMember(lower)) { value = &answer[lower]; } else if (isMandatory) { std::string s = ("The STOW-RS JSON response from DICOMweb peer " + peer + " does not contain the mandatory tag " + upper); OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } else { return false; } if (value->type() != Json::objectValue || !value->isMember("Value") || (*value) ["Value"].type() != Json::arrayValue) { std::string s = "Unable to parse STOW-RS JSON response from DICOMweb peer " + peer; OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } result = (*value) ["Value"].size(); return true; } static void SendStowRequest(const std::string& url, const char* username, const char* password, const std::string& body, const std::string& mime, size_t countInstances) { const char* headersKeys[] = { "Accept", "Expect", "Content-Type" }; const char* headersValues[] = { "application/json", "", mime.c_str() }; uint16_t status = 0; OrthancPluginMemoryBuffer answer; OrthancPluginErrorCode code = OrthancPluginHttpClient(context_, &answer, &status, OrthancPluginHttpMethod_Post, url.c_str(), 3, headersKeys, headersValues, body.c_str(), body.size(), username, password, 0); if (code != OrthancPluginErrorCode_Success || (status != 200 && status != 202)) { std::string s = ("Cannot send DICOM images through STOW-RS to DICOMweb peer " + url + " (HTTP status: " + boost::lexical_cast<std::string>(status) + ")"); OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(static_cast<Orthanc::ErrorCode>(code)); } Json::Value response; Json::Reader reader; bool success = reader.parse(reinterpret_cast<const char*>(answer.data), reinterpret_cast<const char*>(answer.data) + answer.size, response); OrthancPluginFreeMemoryBuffer(context_, &answer); if (!success || response.type() != Json::objectValue || !response.isMember("00081199")) { std::string s = "Unable to parse STOW-RS JSON response from DICOMweb peer " + url; OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } size_t size; if (!GetSequenceSize(size, response, "00081199", true, url) || size != countInstances) { std::string s = ("The STOW-RS server was only able to receive " + boost::lexical_cast<std::string>(size) + " instances out of " + boost::lexical_cast<std::string>(countInstances)); OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } if (GetSequenceSize(size, response, "00081198", false, url) && size != 0) { std::string s = ("The response from the STOW-RS server contains " + boost::lexical_cast<std::string>(size) + " items in its Failed SOP Sequence (0008,1198) tag"); OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } if (GetSequenceSize(size, response, "0008119A", false, url) && size != 0) { std::string s = ("The response from the STOW-RS server contains " + boost::lexical_cast<std::string>(size) + " items in its Other Failures Sequence (0008,119A) tag"); OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); } } static void GetListOfInstances(std::list<std::string>& instances, const OrthancPluginHttpRequest* request) { Json::Value resources; Json::Reader reader; if (!reader.parse(request->body, request->body + request->bodySize, resources) || resources.type() != Json::arrayValue) { std::string s = "The list of resources to be sent through DICOMweb STOW-RS must be given as a JSON array"; OrthancPluginLogError(context_, s.c_str()); throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } // Extract information about all the child instances for (Json::Value::ArrayIndex i = 0; i < resources.size(); i++) { if (resources[i].type() != Json::stringValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } std::string resource = resources[i].asString(); Json::Value tmp; if (OrthancPlugins::RestApiGetJson(tmp, context_, "/instances/" + resource, false)) { AddInstance(instances, tmp); } else if ((OrthancPlugins::RestApiGetJson(tmp, context_, "/series/" + resource, false) && OrthancPlugins::RestApiGetJson(tmp, context_, "/series/" + resource + "/instances", false)) || (OrthancPlugins::RestApiGetJson(tmp, context_, "/studies/" + resource, false) && OrthancPlugins::RestApiGetJson(tmp, context_, "/studies/" + resource + "/instances", false)) || (OrthancPlugins::RestApiGetJson(tmp, context_, "/patients/" + resource, false) && OrthancPlugins::RestApiGetJson(tmp, context_, "/patients/" + resource + "/instances", false))) { if (tmp.type() != Json::arrayValue) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } for (Json::Value::ArrayIndex j = 0; j < tmp.size(); j++) { AddInstance(instances, tmp[j]); } } else { // Unkown resource throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } } } void StowClient(OrthancPluginRestOutput* output, const char* /*url*/, const OrthancPluginHttpRequest* request) { if (request->groupsCount != 1) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); } if (request->method != OrthancPluginHttpMethod_Post) { OrthancPluginSendMethodNotAllowed(context_, output, "POST"); return; } { std::string peer(request->groups[0]); // TODO } std::string url = "http://localhost:8043/dicom-web/studies"; std::list<std::string> instances; GetListOfInstances(instances, request); { std::string s = ("Sending " + boost::lexical_cast<std::string>(instances.size()) + " instances using STOW-RS to DICOMweb server: " + url); OrthancPluginLogInfo(context_, s.c_str()); } std::string boundary; { char* uuid = OrthancPluginGenerateUuid(context_); try { boundary.assign(uuid); } catch (...) { OrthancPluginFreeString(context_, uuid); throw Orthanc::OrthancException(Orthanc::ErrorCode_NotEnoughMemory); } OrthancPluginFreeString(context_, uuid); } std::string mime = "multipart/related; type=application/dicom; boundary=" + boundary; Orthanc::ChunkedBuffer chunks; for (std::list<std::string>::const_iterator it = instances.begin(); it != instances.end(); it++) { std::string dicom; if (OrthancPlugins::RestApiGetString(dicom, context_, "/instances/" + *it + "/file")) { chunks.AddChunk("\r\n--" + boundary + "\r\n" + "Content-Type: application/dicom\r\n" + "Content-Length: " + boost::lexical_cast<std::string>(dicom.size()) + "\r\n\r\n"); chunks.AddChunk(dicom); } } chunks.AddChunk("\r\n--" + boundary + "--\r\n"); std::string body; chunks.Flatten(body); // TODO Split the message SendStowRequest(url, NULL, NULL, body, mime, instances.size()); } extern "C" { ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context) { context_ = context; /* Check the version of the Orthanc core */ if (OrthancPluginCheckVersion(context_) == 0) { char info[1024]; sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin", context_->orthancVersion, ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); OrthancPluginLogError(context_, info); return -1; } OrthancPluginSetDescription(context_, "Implementation of DICOMweb (QIDO-RS, STOW-RS and WADO-RS) and WADO-URI."); // Read the configuration dictionary_ = &gdcm::Global::GetInstance().GetDicts().GetPublicDict(); configuration_ = Json::objectValue; { Json::Value tmp; if (!OrthancPlugins::Configuration::Read(tmp, context) || tmp.type() != Json::objectValue) { OrthancPluginLogError(context_, "Unable to read the configuration file"); return -1; } if (tmp.isMember("DicomWeb") && tmp["DicomWeb"].type() == Json::objectValue) { configuration_ = tmp["DicomWeb"]; } } // Configure the DICOMweb callbacks if (OrthancPlugins::Configuration::GetBoolValue(configuration_, "Enable", true)) { std::string root = OrthancPlugins::Configuration::GetRoot(configuration_); std::string message = "URI to the DICOMweb REST API: " + root; OrthancPluginLogWarning(context_, message.c_str()); Register(root, "instances", Protect<SearchForInstances>); Register(root, "series", Protect<SearchForSeries>); Register(root, "studies", Protect<SwitchStudies>); Register(root, "studies/([^/]*)", Protect<SwitchStudy>); Register(root, "studies/([^/]*)/instances", Protect<SearchForInstances>); Register(root, "studies/([^/]*)/metadata", Protect<RetrieveStudyMetadata>); Register(root, "studies/([^/]*)/series", Protect<SearchForSeries>); Register(root, "studies/([^/]*)/series/([^/]*)", Protect<RetrieveDicomSeries>); Register(root, "studies/([^/]*)/series/([^/]*)/instances", Protect<SearchForInstances>); Register(root, "studies/([^/]*)/series/([^/]*)/instances/([^/]*)", Protect<RetrieveDicomInstance>); Register(root, "studies/([^/]*)/series/([^/]*)/instances/([^/]*)/bulk/(.*)", Protect<RetrieveBulkData>); Register(root, "studies/([^/]*)/series/([^/]*)/instances/([^/]*)/metadata", Protect<RetrieveInstanceMetadata>); Register(root, "studies/([^/]*)/series/([^/]*)/metadata", Protect<RetrieveSeriesMetadata>); Register(root, "studies/([^/]*)/series/([^/]*)/instances/([^/]*)/frames", Protect<RetrieveFrames>); Register(root, "studies/([^/]*)/series/([^/]*)/instances/([^/]*)/frames/([^/]*)", Protect<RetrieveFrames>); Register(root, "peers/([^/]*)/stow", Protect<StowClient>); } else { OrthancPluginLogWarning(context_, "DICOMweb support is disabled"); } // Configure the WADO callback if (OrthancPlugins::Configuration::GetBoolValue(configuration_, "EnableWado", true)) { std::string wado = OrthancPlugins::Configuration::GetWadoRoot(configuration_); std::string message = "URI to the WADO API: " + wado; OrthancPluginLogWarning(context_, message.c_str()); OrthancPluginRegisterRestCallback(context_, wado.c_str(), Protect<WadoUriCallback>); } else { OrthancPluginLogWarning(context_, "WADO support is disabled"); } return 0; } ORTHANC_PLUGINS_API void OrthancPluginFinalize() { } ORTHANC_PLUGINS_API const char* OrthancPluginGetName() { return "dicom-web"; } ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() { return ORTHANC_DICOM_WEB_VERSION; } }