Mercurial > hg > orthanc-dicomweb
view Plugin/StowRs.cpp @ 581:0354c92bbc63
using multiple threads to compute series/metadata
author | Alain Mazy <am@osimis.io> |
---|---|
date | Wed, 28 Jun 2023 14:29:17 +0200 |
parents | c56c1037f1d1 |
children | c1e941efd4f4 |
line wrap: on
line source
/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "StowRs.h" #include "Configuration.h" #include "DicomWebFormatter.h" namespace OrthancPlugins { StowServer::StowServer(OrthancPluginContext* context, const std::map<std::string, std::string>& headers, const std::string& expectedStudy) : context_(context), xml_(Configuration::IsXmlExpected(headers)), wadoBasePublicUrl_(Configuration::GetBasePublicUrl(headers)), expectedStudy_(expectedStudy), isFirst_(true), result_(Json::objectValue), success_(Json::arrayValue), failed_(Json::arrayValue), hasBadSyntax_(false), hasConflict_(false), headers_(headers) { std::string tmp, contentType, subType, boundary; if (!Orthanc::MultipartStreamReader::GetMainContentType(tmp, headers) || !Orthanc::MultipartStreamReader::ParseMultipartContentType(contentType, subType, boundary, tmp)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnsupportedMediaType, "The STOW-RS server expects a multipart body in its request"); } if (contentType != "multipart/related") { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnsupportedMediaType, "The Content-Type of a STOW-RS request must be \"multipart/related\""); } if (subType != "application/dicom") { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnsupportedMediaType, "The STOW-RS plugin currently only supports \"application/dicom\" subtype"); } // Hotfix for bug #190, until the Orthanc Framework is fixed // https://bugs.orthanc-server.com/show_bug.cgi?id=190 if (!boundary.empty() && boundary.size() >= 2 && boundary[0] == '"' && boundary[boundary.size() - 1] == '"') { boundary = boundary.substr(1, boundary.size() - 2); } parser_.reset(new Orthanc::MultipartStreamReader(boundary)); parser_->SetHandler(*this); } void StowServer::HandlePart(const Orthanc::MultipartStreamReader::HttpHeaders& headers, const void* part, size_t size) { std::string contentType; if (!Orthanc::MultipartStreamReader::GetMainContentType(contentType, headers) || contentType != "application/dicom") { throw Orthanc::OrthancException( Orthanc::ErrorCode_UnsupportedMediaType, "The STOW-RS request contains a part that is not " "\"application/dicom\" (it is: \"" + contentType + "\")"); } Json::Value dicom; bool ok = false; try { OrthancString s; s.Assign(OrthancPluginDicomBufferToJson(context_, part, size, OrthancPluginDicomToJsonFormat_Short, OrthancPluginDicomToJsonFlags_None, 256)); if (s.GetContent() != NULL) { ok = true; s.ToJson(dicom); } } catch (Orthanc::OrthancException&) { } if (!ok) { // Bad DICOM file LogWarning("STOW-RS cannot parse an incoming DICOM file"); hasBadSyntax_ = true; return; } if (dicom.type() != Json::objectValue || !dicom.isMember(Orthanc::DICOM_TAG_SERIES_INSTANCE_UID.Format()) || !dicom.isMember(Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()) || !dicom.isMember(Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()) || !dicom.isMember(Orthanc::DICOM_TAG_STUDY_INSTANCE_UID.Format()) || dicom[Orthanc::DICOM_TAG_SERIES_INSTANCE_UID.Format()].type() != Json::stringValue || dicom[Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()].type() != Json::stringValue || dicom[Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()].type() != Json::stringValue || dicom[Orthanc::DICOM_TAG_STUDY_INSTANCE_UID.Format()].type() != Json::stringValue) { LogWarning("STOW-RS: Missing a mandatory tag in incoming DICOM file"); hasBadSyntax_ = true; if (dicom.isMember(Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()) && dicom.isMember(Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()) && dicom[Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()].type() == Json::stringValue && dicom[Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()].type() == Json::stringValue) { Json::Value item = Json::objectValue; item[DICOM_TAG_REFERENCED_SOP_CLASS_UID.Format()] = dicom[Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()].asString(); item[DICOM_TAG_REFERENCED_SOP_INSTANCE_UID.Format()] = dicom[Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()].asString(); item[DICOM_TAG_FAILURE_REASON.Format()] = boost::lexical_cast<std::string>(0xC000); // Error: Cannot understand failed_.append(item); } return; } const std::string seriesInstanceUid = dicom[Orthanc::DICOM_TAG_SERIES_INSTANCE_UID.Format()].asString(); const std::string sopClassUid = dicom[Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()].asString(); const std::string sopInstanceUid = dicom[Orthanc::DICOM_TAG_SOP_INSTANCE_UID.Format()].asString(); const std::string studyInstanceUid = dicom[Orthanc::DICOM_TAG_STUDY_INSTANCE_UID.Format()].asString(); Json::Value item = Json::objectValue; item[DICOM_TAG_REFERENCED_SOP_CLASS_UID.Format()] = sopClassUid; item[DICOM_TAG_REFERENCED_SOP_INSTANCE_UID.Format()] = sopInstanceUid; if (!expectedStudy_.empty() && studyInstanceUid != expectedStudy_) { LogWarning("STOW-RS request restricted to study [" + expectedStudy_ + "], but received instance from study [" + studyInstanceUid + "]"); hasConflict_ = true; item[DICOM_TAG_FAILURE_REASON.Format()] = boost::lexical_cast<std::string>(0x0110); // Processing failure failed_.append(item); } else { if (isFirst_) { std::string url = wadoBasePublicUrl_ + "studies/" + studyInstanceUid; result_[DICOM_TAG_RETRIEVE_URL.Format()] = url; isFirst_ = false; } uint16_t failureReason = 0; try { MemoryBuffer tmp; // make sure to forward the auth headers in the request that is sent to Orthanc (to allow usage of the auth plugin) // since we do not know which header is being used, we include all the headers from the Stow-RS request (headers_), replace // the "content-disposition" + "content-type" that are rebuilt from the multi-part message and remove the headers that might // be mi-interpreted by Orthanc core (like "content-length" that is actually the "content-length" from the whole Stow-RS request, not the length of this file) Orthanc::MultipartStreamReader::HttpHeaders mergedHeaders = headers_; Orthanc::MultipartStreamReader::HttpHeaders::iterator foundContentLength = mergedHeaders.find("content-length"); if (foundContentLength != mergedHeaders.end()) { mergedHeaders.erase(foundContentLength); } ok = tmp.RestApiPost("/instances", part, size, mergedHeaders, true); tmp.Clear(); } catch (Orthanc::OrthancException& ex) { ok = false; if (ex.GetErrorCode() == Orthanc::ErrorCode_FullStorage) { failureReason = 0xA700; // out-of-resources } else { failureReason = 0x0110; // processing error } } if (ok) { std::string url = (wadoBasePublicUrl_ + "studies/" + studyInstanceUid + "/series/" + seriesInstanceUid + "/instances/" + sopInstanceUid); item[DICOM_TAG_RETRIEVE_URL.Format()] = url; success_.append(item); } else { LogError("Orthanc was unable to store one instance in a STOW-RS request"); item[DICOM_TAG_FAILURE_REASON.Format()] = boost::lexical_cast<std::string>(failureReason); failed_.append(item); } } } void StowServer::AddChunk(const void* data, size_t size) { assert(parser_.get() != NULL); parser_->AddChunk(data, size); } void StowServer::Execute(OrthancPluginRestOutput* output) { assert(parser_.get() != NULL); parser_->CloseStream(); result_[DICOM_TAG_FAILED_SOP_SEQUENCE.Format()] = failed_; result_[DICOM_TAG_REFERENCED_SOP_SEQUENCE.Format()] = success_; std::string answer; DicomWebFormatter::Apply(answer, context_, result_, xml_, OrthancPluginDicomWebBinaryMode_Ignore, ""); // http://dicom.nema.org/medical/dicom/current/output/html/part18.html#table_10.5.3-1 uint16_t statusCode = 200; if (hasBadSyntax_) { statusCode = 400; } else if (hasConflict_) { statusCode = 409; } else if (failed_.size() > 0 && success_.size() == 0) // only failed instances but not a conflict or bad syntax -> 400 { statusCode = 400; } else if (failed_.size() > 0 && success_.size() > 0) // 202 = Accepted but some instances have failures { statusCode = 202; } if (statusCode == 200) { OrthancPluginAnswerBuffer(context_, output, answer.c_str(), answer.size(), xml_ ? "application/dicom+xml" : "application/dicom+json"); } else { // TODO: if statusCode is 202, the content will only be sent if HttpDescribeErrors is set to true -> would need OrthancPluginAnswerBuffer with an HttpStatusCode arg OrthancPluginSetHttpHeader(context_, output, "Content-Type", xml_ ? "application/dicom+xml" : "application/dicom+json"); OrthancPluginSendHttpStatus(context_, output, statusCode, answer.c_str(), answer.size()); } }; IChunkedRequestReader* StowServer::PostCallback(const char* url, const OrthancPluginHttpRequest* request) { OrthancPluginContext* context = GetGlobalContext(); if (request->method != OrthancPluginHttpMethod_Post) { throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } std::map<std::string, std::string> headers; OrthancPlugins::GetHttpHeaders(headers, request); std::string expectedStudy; if (request->groupsCount == 1) { expectedStudy = request->groups[0]; } if (expectedStudy.empty()) { LogInfo("STOW-RS request without study"); } else { LogInfo("STOW-RS request restricted to study UID " + expectedStudy); } return new StowServer(context, headers, expectedStudy); } }