Mercurial > hg > orthanc-databases
view MySQL/Plugins/MySQLIndex.cpp @ 22:1e9bad493475
prevent running unit tests on a non-existing db
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 11 Jul 2018 14:39:59 +0200 |
parents | 9e419261f1c9 |
children | b2ff1cd2907a |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2018 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "MySQLIndex.h" #include "../../Framework/Plugins/GlobalProperties.h" #include "../../Framework/MySQL/MySQLDatabase.h" #include "../../Framework/MySQL/MySQLTransaction.h" #include <EmbeddedResources.h> // Auto-generated file #include <Core/Logging.h> #include <Core/OrthancException.h> #include <ctype.h> namespace OrthancDatabases { IDatabase* MySQLIndex::OpenInternal() { uint32_t expectedVersion = 6; if (context_) { expectedVersion = OrthancPluginGetExpectedDatabaseVersion(context_); } else { // This case only occurs during unit testing expectedVersion = 6; } // Check the expected version of the database if (expectedVersion != 6) { LOG(ERROR) << "This database plugin is incompatible with your version of Orthanc " << "expecting the DB schema version " << expectedVersion << ", but this plugin is only compatible with version 6"; throw Orthanc::OrthancException(Orthanc::ErrorCode_Plugin); } if (parameters_.GetDatabase().empty()) { LOG(ERROR) << "Empty database name"; throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } for (size_t i = 0; i < parameters_.GetDatabase().length(); i++) { if (!isalnum(parameters_.GetDatabase() [i])) { LOG(ERROR) << "Only alphanumeric characters are allowed in a " << "MySQL database name: \"" << parameters_.GetDatabase() << "\""; throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } } if (clearAll_) { MySQLParameters p = parameters_; const std::string database = p.GetDatabase(); p.SetDatabase(""); MySQLDatabase db(p); db.Open(); MySQLTransaction t(db); if (!db.DoesDatabaseExist(t, database)) { LOG(ERROR) << "Inexistent database, please create it first: " << database; throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } db.Execute("DROP DATABASE " + database, false); db.Execute("CREATE DATABASE " + database, false); t.Commit(); } std::auto_ptr<MySQLDatabase> db(new MySQLDatabase(parameters_)); db->Open(); db->Execute("SET SESSION TRANSACTION ISOLATION LEVEL SERIALIZABLE", false); if (parameters_.HasLock()) { db->AdvisoryLock(42 /* some arbitrary constant */); } { MySQLTransaction t(*db); db->Execute("ALTER DATABASE " + parameters_.GetDatabase() + " CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci", false); if (!db->DoesTableExist(t, "Resources")) { std::string query; Orthanc::EmbeddedResources::GetFileResource (query, Orthanc::EmbeddedResources::MYSQL_PREPARE_INDEX); db->Execute(query, true); SetGlobalIntegerProperty(*db, t, Orthanc::GlobalProperty_DatabaseSchemaVersion, expectedVersion); SetGlobalIntegerProperty(*db, t, Orthanc::GlobalProperty_DatabasePatchLevel, 1); } if (!db->DoesTableExist(t, "Resources")) { LOG(ERROR) << "Corrupted MySQL database"; throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); } int version = 0; if (!LookupGlobalIntegerProperty(version, *db, t, Orthanc::GlobalProperty_DatabaseSchemaVersion) || version != 6) { LOG(ERROR) << "PostgreSQL plugin is incompatible with database schema version: " << version; throw Orthanc::OrthancException(Orthanc::ErrorCode_Database); } int revision; if (!LookupGlobalIntegerProperty(revision, *db, t, Orthanc::GlobalProperty_DatabasePatchLevel)) { revision = 1; SetGlobalIntegerProperty(*db, t, Orthanc::GlobalProperty_DatabasePatchLevel, revision); } if (revision != 1) { LOG(ERROR) << "PostgreSQL plugin is incompatible with database schema revision: " << revision; throw Orthanc::OrthancException(Orthanc::ErrorCode_Database); } t.Commit(); } return db.release(); } MySQLIndex::MySQLIndex(const MySQLParameters& parameters) : IndexBackend(new Factory(*this)), context_(NULL), parameters_(parameters), clearAll_(false) { } int64_t MySQLIndex::CreateResource(const char* publicId, OrthancPluginResourceType type) { { DatabaseManager::CachedStatement statement( STATEMENT_FROM_HERE, GetManager(), "INSERT INTO Resources VALUES(${}, ${type}, ${id}, NULL)"); statement.SetParameterType("id", ValueType_Utf8String); statement.SetParameterType("type", ValueType_Integer64); Dictionary args; args.SetUtf8Value("id", publicId); args.SetIntegerValue("type", static_cast<int>(type)); statement.Execute(args); } { DatabaseManager::CachedStatement statement( STATEMENT_FROM_HERE, GetManager(), "SELECT LAST_INSERT_ID()"); statement.Execute(); return ReadInteger64(statement, 0); } } void MySQLIndex::DeleteResource(int64_t id) { ClearDeletedFiles(); // Recursive exploration of resources to be deleted, from the "id" // resource to the top of the tree of resources bool done = false; while (!done) { int64_t parentId; { DatabaseManager::CachedStatement lookupSiblings( STATEMENT_FROM_HERE, GetManager(), "SELECT parentId FROM Resources " "WHERE parentId = (SELECT parentId FROM Resources WHERE internalId=${id});"); lookupSiblings.SetParameterType("id", ValueType_Integer64); Dictionary args; args.SetIntegerValue("id", id); lookupSiblings.Execute(args); if (lookupSiblings.IsDone()) { // "id" is a root node done = true; } else { parentId = ReadInteger64(lookupSiblings, 0); lookupSiblings.Next(); if (lookupSiblings.IsDone()) { // "id" has no sibling node, recursively remove done = false; id = parentId; } else { // "id" has at least one sibling node: the parent node is the remaining ancestor done = true; DatabaseManager::CachedStatement parent( STATEMENT_FROM_HERE, GetManager(), "SELECT publicId, resourceType FROM Resources WHERE internalId=${id};"); parent.SetParameterType("id", ValueType_Integer64); Dictionary args; args.SetIntegerValue("id", parentId); parent.Execute(args); GetOutput().SignalRemainingAncestor( ReadString(parent, 0), static_cast<OrthancPluginResourceType>(ReadInteger32(parent, 1))); } } } } { DatabaseManager::CachedStatement deleteHierarchy( STATEMENT_FROM_HERE, GetManager(), "DELETE FROM Resources WHERE internalId IN (SELECT * FROM (SELECT internalId FROM Resources WHERE internalId=${id} OR parentId=${id} OR parentId IN (SELECT internalId FROM Resources WHERE parentId=${id}) OR parentId IN (SELECT internalId FROM Resources WHERE parentId IN (SELECT internalId FROM Resources WHERE parentId=${id}))) as t);"); deleteHierarchy.SetParameterType("id", ValueType_Integer64); Dictionary args; args.SetIntegerValue("id", id); deleteHierarchy.Execute(args); } SignalDeletedFiles(); } }